Principal component analysis for predicting transcription-factor binding motifs from array-derived data

BMC Bioinformatics

Volumn 6, Issue , 2005, Pages

  Liu, Yunlong ^a,b   Vincenti, Matthew P ^c,d   Yokota, Hiroki ^a,b  

^a INDIANA UNIVERSITY   (United States)

^b PURDUE UNIVERSITY   (United States)

^c Department of Veteran's Affairs ^*  (United States)

^d DARTMOUTH MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL ALGORITHMS; COMBINATORIAL OPTIMIZATION PROBLEMS; COMPUTATIONAL APPROACH; COMPUTATIONAL COSTS; HUMAN CHONDROCYTES; RANDOM DNA SEQUENCES; REGULATORY MECHANISM; TRANSCRIPTIONAL REGULATION;

ALGORITHMS; DNA SEQUENCES; FORECASTING; GENES; MONTE CARLO METHODS; NUCLEIC ACIDS; PRINCIPAL COMPONENT ANALYSIS; SINGULAR VALUE DECOMPOSITION;

TRANSCRIPTION;

BINDING PROTEIN; CORE PROTEIN; GENOMIC DNA; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; INTERLEUKIN 1; MESSENGER RNA; PROTEIN AB14; PROTEIN ETF; PROTEIN GC BOX; PROTEIN IK 1; PROTEIN KROX; PROTEIN PPARG; PROTEIN ROAZ; PROTEIN SRF; PROTEIN STAF; STAT PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP 2; TRANSCRIPTION FACTOR E2F; TRANSCRIPTION FACTOR EGR 1; TRANSCRIPTION FACTOR SP1; UNCLASSIFIED DRUG; DNA; PROTEIN BINDING;

ARTICLE; CARTILAGE CELL; DATA ANALYSIS; DNA DETERMINATION; DNA SEQUENCE; DOWN REGULATION; GENE EXPRESSION; GENE MAPPING; GENE VECTOR; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC LINKAGE; HUMAN; HUMAN CELL; MATHEMATICAL COMPUTING; MONTE CARLO METHOD; PREDICTION; PROCESS OPTIMIZATION; PROMOTER REGION; PROTEIN BINDING; PROTEIN DATABASE; PROTEIN DETERMINATION; PROTEIN MOTIF; QUANTITATIVE ANALYSIS; STATISTICAL MODEL; UPREGULATION; VALIDATION PROCESS; ALGORITHM; BIOLOGY; CHEMISTRY; DNA MICROARRAY; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; METABOLISM; PRINCIPAL COMPONENT ANALYSIS; PROCEDURES; PROTEIN MICROARRAY;

ALGORITHMS; AMINO ACID MOTIFS; CHONDROCYTES; COMPUTATIONAL BIOLOGY; DNA; GENE EXPRESSION REGULATION; HUMANS; INTERLEUKIN-1; MODELS, STATISTICAL; MONTE CARLO METHOD; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; PROMOTER REGIONS, GENETIC; PROTEIN ARRAY ANALYSIS; PROTEIN BINDING; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 28344440835     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-276     Document Type: Article

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