메뉴 건너뛰기




Volumn 12, Issue 4, 2005, Pages 659-669

Nick-directed repair of palindromic loop mismatches in human cell extracts

Author keywords

DNA loop repair; Human cells; Mismatch repair; Nick directed; Palindromic sequence

Indexed keywords

APHIDICOLIN; CELL EXTRACT; DNA POLYMERASE; ENZYME INHIBITOR; PALINDROMIC DNA;

EID: 27944464867     PISSN: 10217770     EISSN: 14230127     Source Type: Journal    
DOI: 10.1007/s11373-005-7891-y     Document Type: Article
Times cited : (3)

References (47)
  • 1
    • 0027401676 scopus 로고
    • Characterization of the human ADP-ribosylation factor 3 promoter transcriptional regulation of a TATA-less promoter
    • Haun R.S., Moss J. and Vaughan M., Characterization of the human ADP-ribosylation factor 3 promoter transcriptional regulation of a TATA-less promoter. J. Biol. Chem. 268: 8793-8800, 1993.
    • (1993) J. Biol. Chem. , vol.268 , pp. 8793-8800
    • Haun, R.S.1    Moss, J.2    Vaughan, M.3
  • 2
    • 0026328043 scopus 로고
    • The E-cadherin promoter: Functional analysis of a G.C-rich region and an epithelial cell-specific palindromic regulatory element
    • USA
    • Behrens J., Lowrick O., Klein-Hitpass L. and Birchmeier W., The E-cadherin promoter: functional analysis of a G.C-rich region and an epithelial cell-specific palindromic regulatory element. Proc. Natl. Acad. Sci. USA 88: 11495-11499, 1991.
    • (1991) Proc. Natl. Acad. Sci. , vol.88 , pp. 11495-11499
    • Behrens, J.1    Lowrick, O.2    Klein-Hitpass, L.3    Birchmeier, W.4
  • 3
    • 0033552638 scopus 로고    scopus 로고
    • Twenty years of p53 research: Structural and functional aspects of the p53 protein
    • May P. and May E., Twenty years of p53 research: structural and functional aspects of the p53 protein. Oncogene 18: 7621-7636, 1999.
    • (1999) Oncogene , vol.18 , pp. 7621-7636
    • May, P.1    May, E.2
  • 4
    • 0026650531 scopus 로고
    • A transcriptionally active DNA-binding site for human p53 protein complexes
    • Funk W.D., Pak D.T., Karas R.H., Wright W.E. and Shay J.W., A transcriptionally active DNA-binding site for human p53 protein complexes. Mol. Cell. Biol. 12: 2866-2871, 1992.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 2866-2871
    • Funk, W.D.1    Pak, D.T.2    Karas, R.H.3    Wright, W.E.4    Shay, J.W.5
  • 5
    • 0027491391 scopus 로고
    • Multitude of inverted repeats characterizes a class of anchorage sites of chromatin loops to the nuclear matrix
    • Boulikas T. and Kong C.F., Multitude of inverted repeats characterizes a class of anchorage sites of chromatin loops to the nuclear matrix. J. Cell Biochem. 53: 1-12, 1993.
    • (1993) J. Cell Biochem. , vol.53 , pp. 1-12
    • Boulikas, T.1    Kong, C.F.2
  • 6
    • 0001158989 scopus 로고    scopus 로고
    • DNA inverted repeats and human disease
    • Bissler J.J., DNA inverted repeats and human disease. Front. Biosci. 3: d408-418, 1998.
    • (1998) Front. Biosci. , vol.3
    • Bissler, J.J.1
  • 7
    • 0030756511 scopus 로고    scopus 로고
    • Organization, generation and replication of amphimeric genomes: A review
    • Rayko E., Organization, generation and replication of amphimeric genomes: a review. Gene 199: 1-18, 1997.
    • (1997) Gene , vol.199 , pp. 1-18
    • Rayko, E.1
  • 8
    • 0025109103 scopus 로고
    • Misalignment-mediated DNA synthesis errors
    • Kunkel T.A., Misalignment-mediated DNA synthesis errors. Biochemistry 29: 8003-8011, 1990.
    • (1990) Biochemistry , vol.29 , pp. 8003-8011
    • Kunkel, T.A.1
  • 9
    • 0031981941 scopus 로고    scopus 로고
    • Biased short tract repair of palindromic loop mismatches in mammalian cells
    • Taghian D.G., Hough H. and Nickoloff J.A., Biased short tract repair of palindromic loop mismatches in mammalian cells. Genetics 148: 1257-1268, 1998.
    • (1998) Genetics , vol.148 , pp. 1257-1268
    • Taghian, D.G.1    Hough, H.2    Nickoloff, J.A.3
  • 10
    • 0026419949 scopus 로고
    • Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli
    • Trinh T.Q. and Sinden R.R., Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli. Nature 352: 544-547, 1991.
    • (1991) Nature , vol.352 , pp. 544-547
    • Trinh, T.Q.1    Sinden, R.R.2
  • 11
    • 0029161151 scopus 로고
    • Differential DNA secondary structure-mediated deletion mutation in the leading and lagging strands
    • Rosche W.A., Trinh T.Q. and Sinden R.R., Differential DNA secondary structure-mediated deletion mutation in the leading and lagging strands. J. Bacteriol. 177: 4385-4391, 1995.
    • (1995) J. Bacteriol. , vol.177 , pp. 4385-4391
    • Rosche, W.A.1    Trinh, T.Q.2    Sinden, R.R.3
  • 12
    • 0031803630 scopus 로고    scopus 로고
    • Replication strand preference for deletions associated with DNA palindromes
    • Pinder D.J., Blake C.E., Lindsey J.C. and Leach D.R., Replication strand preference for deletions associated with DNA palindromes. Mol. Microbiol. 28: 719-727, 1998.
    • (1998) Mol. Microbiol. , vol.28 , pp. 719-727
    • Pinder, D.J.1    Blake, C.E.2    Lindsey, J.C.3    Leach, D.R.4
  • 13
    • 0031556020 scopus 로고    scopus 로고
    • Leading strand specific spontaneous mutation corrects a quasipalindrome by an intermolecular strand switch mechanism
    • Rosche W.A., Trinh T.Q. and Sinden R.R., Leading strand specific spontaneous mutation corrects a quasipalindrome by an intermolecular strand switch mechanism. J. Mol. Biol. 269: 176-187, 1997.
    • (1997) J. Mol. Biol. , vol.269 , pp. 176-187
    • Rosche, W.A.1    Trinh, T.Q.2    Sinden, R.R.3
  • 14
    • 0342511553 scopus 로고
    • Demonstration of the production of frameshift and base-substitution mutations by quasipalindromic DNA sequences
    • USA
    • de Boer J.G. and Ripley L.S., Demonstration of the production of frameshift and base-substitution mutations by quasipalindromic DNA sequences. Proc. Natl. Acad. Sci. USA 81: 5528-5531, 1984.
    • (1984) Proc. Natl. Acad. Sci. , vol.81 , pp. 5528-5531
    • De Boer, J.G.1    Ripley, L.S.2
  • 15
    • 0032426851 scopus 로고    scopus 로고
    • C1 inhibitor gene sequence facilitates frameshift mutations
    • Bissler J.J., Meng Q.S. and Emery T., C1 inhibitor gene sequence facilitates frameshift mutations. Mol. Med. 4: 795-806, 1998.
    • (1998) Mol. Med. , vol.4 , pp. 795-806
    • Bissler, J.J.1    Meng, Q.S.2    Emery, T.3
  • 16
    • 0030896804 scopus 로고    scopus 로고
    • A small intraexonic deletion within the dystrophin gene suggests a possible mechanism of mutagenesis
    • Robinson D.O., Bunyan D.J., Gabb H.A., Temple I.K. and Yau S.C., A small intraexonic deletion within the dystrophin gene suggests a possible mechanism of mutagenesis. Hum. Genet. 99: 658-662, 1997.
    • (1997) Hum. Genet. , vol.99 , pp. 658-662
    • Robinson, D.O.1    Bunyan, D.J.2    Gabb, H.A.3    Temple, I.K.4    Yau, S.C.5
  • 17
    • 0029795308 scopus 로고    scopus 로고
    • Deletion/insertion mutation that causes biotinidase deficiency may result from the formation of a quasipalindromic structure
    • Pomponio R.J., Narasimhan V., Reynolds T.R., Buck G.A., Povirk L.F. and Wolf B., Deletion/insertion mutation that causes biotinidase deficiency may result from the formation of a quasipalindromic structure. Hum. Mol. Genet. 5: 1657-1661, 1996.
    • (1996) Hum. Mol. Genet. , vol.5 , pp. 1657-1661
    • Pomponio, R.J.1    Narasimhan, V.2    Reynolds, T.R.3    Buck, G.A.4    Povirk, L.F.5    Wolf, B.6
  • 18
    • 0028242364 scopus 로고
    • A novel complex mutation in the LDL receptor gene probably caused by the simultaneous occurrence of deletion and insertion in the same region
    • Yamakawa-Kobayashi K., Kobayashi T., Yanagi H., Shimakura Y., Satoh J. and Hamaguchi H., A novel complex mutation in the LDL receptor gene probably caused by the simultaneous occurrence of deletion and insertion in the same region. Hum. Genet. 93: 625-628, 1994.
    • (1994) Hum. Genet. , vol.93 , pp. 625-628
    • Yamakawa-Kobayashi, K.1    Kobayashi, T.2    Yanagi, H.3    Shimakura, Y.4    Satoh, J.5    Hamaguchi, H.6
  • 19
    • 0026606664 scopus 로고
    • Formation of heteroduplex DNA during mammalian intrachromosomal gene conversion
    • Bollag R.J., Elwood D.R., Tobin E.D., Godwin A.R. and Liskay R.M., Formation of heteroduplex DNA during mammalian intrachromosomal gene conversion. Mol. Cell. Biol. 12: 1546-1552, 1992.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 1546-1552
    • Bollag, R.J.1    Elwood, D.R.2    Tobin, E.D.3    Godwin, A.R.4    Liskay, R.M.5
  • 20
    • 0027972549 scopus 로고
    • Mismatch repair of heteroduplex DNA intermediates of extrachromosomal recombination in mammalian cells
    • Deng W.P. and Nickoloff J.A., Mismatch repair of heteroduplex DNA intermediates of extrachromosomal recombination in mammalian cells. Mol. Cell. Biol. 14: 400-406, 1994.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 400-406
    • Deng, W.P.1    Nickoloff, J.A.2
  • 21
    • 0035804817 scopus 로고    scopus 로고
    • Repair bias of large loop mismatches during recombination in mammalian cells depends on loop length and structure
    • Bill C.A., Taghian D.G., Duran W.A. and Nickoloff J.A., Repair bias of large loop mismatches during recombination in mammalian cells depends on loop length and structure. Mutat. Res. 485: 255-265, 2001.
    • (2001) Mutat. Res. , vol.485 , pp. 255-265
    • Bill, C.A.1    Taghian, D.G.2    Duran, W.A.3    Nickoloff, J.A.4
  • 22
    • 0024337887 scopus 로고
    • Palindromic sequences in heteroduplex DNA inhibit mismatch repair in yeast
    • Nag D.K., White M.A. and Petes T.D., Palindromic sequences in heteroduplex DNA inhibit mismatch repair in yeast. Nature 340: 318-320, 1989.
    • (1989) Nature , vol.340 , pp. 318-320
    • Nag, D.K.1    White, M.A.2    Petes, T.D.3
  • 23
    • 0025933719 scopus 로고
    • Seven-base-pair inverted repeats in DNA form stable hairpins in vivo in Saccharomyces cerevisiae
    • Nag D.K. and Petes T.D., Seven-base-pair inverted repeats in DNA form stable hairpins in vivo in Saccharomyces cerevisiae. Genetics 129: 669-673, 1991.
    • (1991) Genetics , vol.129 , pp. 669-673
    • Nag, D.K.1    Petes, T.D.2
  • 24
    • 0029784320 scopus 로고    scopus 로고
    • Biochemistry and genetics of eukaryotic mismatch repair
    • Kolodner R., Biochemistry and genetics of eukaryotic mismatch repair. Genes Dev. 10: 1433-1442, 1996.
    • (1996) Genes Dev. , vol.10 , pp. 1433-1442
    • Kolodner, R.1
  • 25
    • 0029943449 scopus 로고    scopus 로고
    • Mismatch repair in replication fidelity, genetic recombination, and cancer biology
    • Modrich P. and Lahue R.S., Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu. Rev. Biochem. 65: 101-133, 1996.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 101-133
    • Modrich, P.1    Lahue, R.S.2
  • 26
    • 0030884235 scopus 로고    scopus 로고
    • Methyl-directed repair of mismatched small heterologous sequences in cell extracts from Escherichia coli
    • Fang W.-H., Wu J.-Y. and Su M.-J., Methyl-directed repair of mismatched small heterologous sequences in cell extracts from Escherichia coli. J. Biol. Chem. 272: 22714-22720, 1997.
    • (1997) J. Biol. Chem. , vol.272 , pp. 22714-22720
    • Fang, W.-H.1    Wu, J.-Y.2    Su, M.-J.3
  • 28
    • 0027988576 scopus 로고
    • DNA loop repair by human cell extracts
    • Umar A., Boyer J.C. and Kunkel T.A., DNA loop repair by human cell extracts. Science 266: 814-816, 1994.
    • (1994) Science , vol.266 , pp. 814-816
    • Umar, A.1    Boyer, J.C.2    Kunkel, T.A.3
  • 29
    • 0032584384 scopus 로고    scopus 로고
    • Isolation of MutSbeta from human cells and comparison of the mismatch repair specificities of MutSbeta and MutSalpha
    • Genschel J., Littman S.J., Drummond J.T. and Modrich P., Isolation of MutSbeta from human cells and comparison of the mismatch repair specificities of MutSbeta and MutSalpha. J. Biol. Chem. 273: 19895-19901, 1998.
    • (1998) J. Biol. Chem. , vol.273 , pp. 19895-19901
    • Genschel, J.1    Littman, S.J.2    Drummond, J.T.3    Modrich, P.4
  • 30
    • 0037423360 scopus 로고    scopus 로고
    • Bi-directional processing of DNA loops by mismatch repair-dependent and - Independent pathways in human cells
    • McCulloch S.D., Gu L. and Li G.M., Bi-directional processing of DNA loops by mismatch repair-dependent and - independent pathways in human cells. J. Biol. Chem. 278: 3891-3896, 2003.
    • (2003) J. Biol. Chem. , vol.278 , pp. 3891-3896
    • McCulloch, S.D.1    Gu, L.2    Li, G.M.3
  • 31
    • 0033580932 scopus 로고    scopus 로고
    • Correction of large mispaired DNA loops by extracts of Saccharomyces cerevisiae
    • Corrette-Bennett S.E., Parker B.O., Mohlman N.L. and Lahue R.S., Correction of large mispaired DNA loops by extracts of Saccharomyces cerevisiae. J. Biol. Chem. 274: 17605-17611, 1999.
    • (1999) J. Biol. Chem. , vol.274 , pp. 17605-17611
    • Corrette-Bennett, S.E.1    Parker, B.O.2    Mohlman, N.L.3    Lahue, R.S.4
  • 33
    • 0033548703 scopus 로고    scopus 로고
    • Repair of large insertion/deletion heterologies in human nuclear extracts is directed by a 5′ single-strand break and is independent of the mismatch repair system
    • Littman S.J., Fang W.H. and Modrich P., Repair of large insertion/deletion heterologies in human nuclear extracts is directed by a 5′ single-strand break and is independent of the mismatch repair system. J. Biol. Chem. 274: 7474-7481, 1999.
    • (1999) J. Biol. Chem. , vol.274 , pp. 7474-7481
    • Littman, S.J.1    Fang, W.H.2    Modrich, P.3
  • 35
    • 0032493294 scopus 로고    scopus 로고
    • The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA
    • USA
    • Connelly J.C., Kirkham L.A. and Leach D.R., The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA. Proc. Natl. Acad. Sci. USA 95: 7969-7974, 1998.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 7969-7974
    • Connelly, J.C.1    Kirkham, L.A.2    Leach, D.R.3
  • 36
    • 0030089480 scopus 로고    scopus 로고
    • The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination
    • Connelly J.C. and Leach D.R., The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination. Genes Cells 1: 285-291, 1996.
    • (1996) Genes Cells , vol.1 , pp. 285-291
    • Connelly, J.C.1    Leach, D.R.2
  • 37
    • 0030756165 scopus 로고    scopus 로고
    • Overexpression, purification, and characterization of the SbcCD protein from Escherichia coli
    • Connelly J.C., Leau E.S.de, Okely E.A. and Leach D.R., Overexpression, purification, and characterization of the SbcCD protein from Escherichia coli. J Biol Chem 272: 19819-19826, 1997.
    • (1997) J. Biol. Chem. , vol.272 , pp. 19819-19826
    • Connelly, J.C.1    Leau, E.S.D.2    Okely, E.A.3    Leach, D.R.4
  • 38
    • 0030714064 scopus 로고    scopus 로고
    • Repair by recombination of DNA containing a palindromic sequence
    • Leach D.R., Okely E.A. and Pinder D.J., Repair by recombination of DNA containing a palindromic sequence. Mol. Microbiol. 26: 597-606, 1997.
    • (1997) Mol. Microbiol. , vol.26 , pp. 597-606
    • Leach, D.R.1    Okely, E.A.2    Pinder, D.J.3
  • 39
    • 0033960606 scopus 로고    scopus 로고
    • Palindromes as substrates for multiple pathways of recombination in Escherichia coli
    • Cromie G.A., Millar C.B., Schmidt K.H. and Leach D.R., Palindromes as substrates for multiple pathways of recombination in Escherichia coli. Genetics 154: 513-522, 2000.
    • (2000) Genetics , vol.154 , pp. 513-522
    • Cromie, G.A.1    Millar, C.B.2    Schmidt, K.H.3    Leach, D.R.4
  • 40
    • 0029742576 scopus 로고    scopus 로고
    • Human Rad50 is physically associated with human Mre11: Identification of a conserved multiprotein complex implicated in recombinational DNA repair
    • Dolganov G.M., Maser R.S., Novikov A., Tosto L., Chong S., Bressan D.A. and Petrini J.H., Human Rad50 is physically associated with human Mre11: identification of a conserved multiprotein complex implicated in recombinational DNA repair. Mol. Cell. Biol. 16: 4832-4841, 1996.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 4832-4841
    • Dolganov, G.M.1    Maser, R.S.2    Novikov, A.3    Tosto, L.4    Chong, S.5    Bressan, D.A.6    Petrini, J.H.7
  • 41
    • 0032085295 scopus 로고    scopus 로고
    • The 3′ to 5′ exonuclease activity of Mre 11 facilitates repair of DNA double-strand breaks
    • Paull T.T. and Gellert M., The 3′ to 5′ exonuclease activity of Mre 11 facilitates repair of DNA double-strand breaks. Mol. Cell. 1: 969-979, 1998.
    • (1998) Mol. Cell. , vol.1 , pp. 969-979
    • Paull, T.T.1    Gellert, M.2
  • 42
    • 0031878710 scopus 로고    scopus 로고
    • Double-strand break repair mediated by DNA end-joining
    • Tsukamoto Y. and Ikeda H., Double-strand break repair mediated by DNA end-joining. Genes Cells 3: 135-144, 1998.
    • (1998) Genes Cells , vol.3 , pp. 135-144
    • Tsukamoto, Y.1    Ikeda, H.2
  • 43
    • 0025340001 scopus 로고
    • Strand-specific mismatch correction in nuclear extracts of human and Drosophila melanogaster cell lines
    • USA
    • Holmes J. Jr., Clark S. and Modrich P., Strand-specific mismatch correction in nuclear extracts of human and Drosophila melanogaster cell lines. Proc. Natl. Acad. Sci. USA 87: 5837-5841, 1990.
    • (1990) Proc. Natl. Acad. Sci. , vol.87 , pp. 5837-5841
    • Holmes Jr., J.1    Clark, S.2    Modrich, P.3
  • 45
    • 0027269844 scopus 로고
    • Human strand-specific mismatch repair occurs by a bidirectional mechanism similar to that of the bacterial reaction
    • Fang W.-H. and Modrich P., Human strand-specific mismatch repair occurs by a bidirectional mechanism similar to that of the bacterial reaction. J. Biol. Chem. 268: 11838-11844, 1993.
    • (1993) J. Biol. Chem. , vol.268 , pp. 11838-11844
    • Fang, W.-H.1    Modrich, P.2
  • 46
    • 0028289189 scopus 로고
    • Detection of localized DNA flexibility
    • Kahn J.D., Yun E. and Crothers D.M., Detection of localized DNA flexibility. Nature 368: 163-166, 1994.
    • (1994) Nature , vol.368 , pp. 163-166
    • Kahn, J.D.1    Yun, E.2    Crothers, D.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.