A novel intra-molecular protein-protein interaction code based on partial complementary coding of co-locating amino acids

Medical Hypotheses

Volumn 66, Issue 1, 2006, Pages 137-142

  Biro, Jan C ^a  

^a Homulus Foundation   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; NUCLEIC ACID; PROTEIN;

AB INITIO CALCULATION; AMINO ACID SEQUENCE; ARTICLE; BASE PAIRING; BIOCHEMISTRY; CODON; GENETIC CODE; PHYSICAL CHEMISTRY; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STATISTICAL ANALYSIS;

AMINO ACID SEQUENCE; CODON; COMPUTATIONAL BIOLOGY; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEINS; PROTEOMICS; SOFTWARE;

EID: 27744483303     PISSN: 03069877     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mehy.2005.07.014     Document Type: Article

References (16)

1. J. Biro Comparative analysis of specificity in protein-protein interactions. Part I: a theoretical and mathematical approach to specificity in protein-protein interactions Med Hypotheses 7 1981 969 979
2. J. Biro Comparative analysis of specificity in protein-protein interactions. Part II: the complementary coding of some proteins as the possible source of specificity in protein-protein interactions Med Hypotheses 7 1981 981 993
3. J. Biro Comparative analysis of specificity in protein-protein interactions. Part III: models of the gene expression based on the sequential complementary coding of some pituitary proteins Med Hypotheses 7 1981 995 1007
4. U. Segersteen, H. Nordgren, and J.C. Biro Frequent occurrence of short complementary sequences in nucleic acids Biochem Biophys Res Commun 139 1986 94 101
5. J.C. Biro, B. Benyo, and C. Sansom A common periodic table of codons and amino acids Biochem Biophys Res Commun 306 2003 408 415
6. J.R. Heal, G.W. Roberts, J.G. Raynes, A. Bhakoo, and A.D. Miller Specific interactions between sense and complementary peptides: the basis for the proteomic code Chem Biochem 3 2002 136 151
7. A.E. Gabrielian, and S. Heymann Amino acid complementarity: testing of hypotheses Biomed Sci 1 1990 311 313
8. I.Z. Siemion, M. Cebrat, and A. Kluczyk The problem of amino acid complementarity and antisense peptides Curr Protein Pept Sci 5 2004 507 527
9. J.C. Biro, and G. Fördös SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures BMC Bioinformatics 6 2005 170
10. H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, and H. Weissig The protein data bank (PDB) Nucl Acids Res 28 2000 235 242 http://www.pdb.org/
11. C.R. Woese The genetic code: the molecular basis for gene expression 1967 Harper & Row New York p. 156-160 [chapter 6-7]
12. F.H.C. Crick The origin of the genetic code J Mol Biol 38 1968 367 379
13. I.N. Berezovsky, A. Kirzhner, V.M. Kirzhner, V.R. Rosenfeld, and E.N. Trifonov Protein sequences yield a proteomic code J Biomol Struct Dyn 21 2003 317 325
14. E.N. Trifonov, and I.N. Berezovsky Proteomic code Mol Biol 36 2002 239 243
15. J.C. Biro, Z. Benyo, C. Sansom, and B. Benyo In search of the nature of specific nucleic acidprotein interactions Acta Physiol Hung 92 2005 1 10
16. J.C. Biro, and J.M. Biro Frequent occurrence of recognition site-like sequences in the restriction endonucleases BMC Bioinformatics 5 2004 30