Comprehensive analysis of dynamics of histone H4 acetylation in mitotic barley cells

Genes and Genetic Systems

Volumn 80, Issue 4, 2005, Pages 269-276

  Wako, Toshiyuki ^a   Murakami, Youko ^b   Fukui, Kiichi ^b  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

Barley; Histone H4 acetylation; Mitotic chromosome; Nucleolar organizing region (NOR)

Indexed keywords

HISTONE H4;

ACETYLATION; ANAPHASE; ARTICLE; BARLEY; CELL CYCLE; CENTROMERE; CHROMOSOME NOR; CHROMOSOME STRUCTURE; CONTROLLED STUDY; GENE FUNCTION; IMMUNOFLUORESCENCE; INTERPHASE; MITOSIS; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOSOME; PLANT CELL; PLANT CHROMOSOME;

ACETYLATION; CENTROMERE; CHROMOSOMES, PLANT; HISTONES; HORDEUM; LYSINE; NUCLEOLUS ORGANIZER REGION; NUCLEOSOMES; PROPHASE; PROTEIN PROCESSING, POST-TRANSLATIONAL; TELOPHASE;

HORDEUM VULGARE SUBSP. VULGARE;

EID: 27744453898     PISSN: 13417568     EISSN: 13417568     Source Type: Journal    
DOI: 10.1266/ggs.80.269     Document Type: Article

References (44)

1. Belyaev, N.D., Houben, A., Baranczewski, P. and Schubert, I. (1997) Histone H4 acetylation in plant heterochromatin is altered during the cell cycle. Chromosoma 106, 193-197.
2. Bird, A. W., Yu, D. Y., Pray-Grant, M. G., Qiu, Q. F., Harmon, K. E., Megee, P. C., Grant, P. A., Smith, M. M. and Christman, M. F. (2002) Acetylation of histone H4 by Esa1 is required for DNA double-strand break repair. Nature 419, 411-415.
3. Bowne, N. J., Jordan, I. K., Epstein, J. A., Wood, V. and Levin, H. L. (2003) Retrotransposons and their recognition of pol II promoters: A comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe. Genome Res. 13, 1984-1987.
4. Ekwall, K., Olsson, T., Turner, B.M., Cranston, G. and Allshire, R. C. (1997) Transient inhibition of histone deacetylation alters the structural and functional imprint at fission yeast centromeres. Cell 91, 1021-1032.
5. Fukui, K. (1996) Plant Chromosomes at Mitosis. In: Plant Chromosomes: Laboratory Methods (eds Fukui, K. and Nakayama, S.), pp. 1-18. CRC press, Boca Raton, CRC press, Inc.
6. Fukui, K. and Kakeda, K. (1990) Quantitative karyotyping of barley chromosomes by image analysis methods. Genome 33, 450-458.
7. Houben, A., Belyaev, N. D., Turner, B. M. and Schubert, I. (1996) Differential immunostaining of plant chromosomes by antibodies recognizing acetylated histone H4 variants. Chromosome Res. 4, 191-194.
8. Houben, A., Wako, T., Furushima-Shimogawara, R., Presting, G., Künzel, G., Schubert, I. and Fukui, K. (1999) The cell cycle dependent phosphorylation of histone H3 is correlated with the condensation of plant mitotic chromosomes. Plant J. 18, 675-679.
9. Iwano, M., Fukui, K., Takaichi, S. and Isogai, A. (1997) Globular and fibrous structure in barley chromosomes revealing high-resolution scanning electoron microscopy. Chromosome Res. 5, 341-349.
10. Jacobson, R. H., Ladurner, A. G., King, D.S. and Tjian, R. (2000) Structure and function of a human TAF(II)250 double bromodomain module. Science 288, 1422-1425.
11. Jasencakova, Z., Meister, A., Walter, J., Turner, B. M. and Schubert, I. (2000) Histone H4 acetylation of euchromatin and heterochromatin is cell cycle dependent and correlated with replication rather than with transcription. Plant Cell 12, 2087-2100.
12. Jasencakova, Z., Meister, A. and Schubert, I. (2001) Chromatin organization and its relation to replication and histone acetylation during the cell cycle in barley. Chromosoma 110, 83-92.
13. Jasencakova, Z., Soppe, W. J. J., Meister, A., Gernand, D., Turner, B. M. and Schubert, I. (2003) Histone modifications in Arabidopsis - high methylation of H3 lysine 9 is dispensable for constitutive heterochromatin. Plant J. 33, 471-480.
14. Jenuwein, T. and Allis, C. D. (2001) Translating the histone code. Science 293, 1074-1080.
15. Kato, S. and Fukui, K. (1998) Condensation pattern analysis using a newly developed chromosome image analyzing system (CHIAS III). Chromosome Res. 6, 473-479.
16. Keohane, A. M., Lavender, J. S., O'Neill, L. P. and Turner, B. M. (1998) Histone acetylation and X inactivation. Dev. Genet. 22, 65-73.
17. Kimura, A. and Horikoshi, M. (1998) How do histone acetyltransferases select lysine residues in core histones? FEBS Lett. 431, 131-133.
18. Kölle, D., Sarg, B., Linder, H. and Loidl, P. (1998) Substrate and sequential site specifity of cytoplasmic histone acetyltransferases of maize and rat liver. FEBS Lett. 421, 109-114.
19. Kölle, D., Brosch, G., Lechner, T., Pipal, A., Helliger, W., Taplick, J. and Loidl, P. (1999) Different types of maize histone deacetylases are distuinguished by a highly complex substrate and site specificity. Biochem. 38, 6769-6773.
20. Künzel, G., Korzun, L. and Meister, A. (2000) Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints. Genetics 154, 397-412.
21. Lachner, M., O'Sullivan, R. J. and Jenuwein, T. (2003) An epigenetic road map for histone lysine methylation. J. Cell Sci. 116, 2117-2124.
22. Marks, P. A., Miller, T. and Richon, V. M (2003) Histone deacetylases. Curr. Opin. Pharmacol. 3, 344-351.
23. Marmorstein, R. and Roth, S. Y. (2001) Histone acetyltransferases: function, structure, and catalysis. Curr. Opin. Genet. Dev. 11, 155-161.
24. Nagaki, K., Cheng, Z., Ouyang, S., Talber, P. B., Kim, M., Jones, K. M., Henikoff, S., Buell, C. R. and Jiang, J.(2004) Sequencing of a rice centromere uncovers active genes. Nature Genet. 36, 138-145.
25. Ohmido, N. and Fukui, K. (1997) Visual verification of close disposition between a rice A genome-specific DNA sequence (TrsA) and the telomere sequence. Plant Mol. Biol. 35, 963-968.
26. Ohmido, N., Kijima, K., Ashikawa, I., de Jong, J. H. and Fukui, K. (2001) Visualization of the terminal structure of rice chromosomes 6 and 12 using multicolor FISH to chromosomes and extended DNA fibers. Plant Mol. Biol. 47, 413-421.
27. Parthun, M. R., Widom, J. and Gottschling, D. E. (1996) The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism. Cell 87, 85-94.
28. Presting, G., Malysheva, L., Fuchs, J. and Schubert, I. (1998) A TY3/GYPSY retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes. Plant J. 16, 721-728.
29. Richards, E. J. and Ausubel, F. M. (1988) Isolation of a higher eukaryotic telomere from Arabidpsis thaliana. Cell 53, 127-136.
30. Roussel, P., André, C., Comai, L. and Hernandez-Verdun, D. (1996) The rDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs. J. Cell. Biol. 133, 235-246.
31. Rundlett, S. E., Carmen, A. A., Suka, N., Turner, B. M. and Grunstein, M. (1998) Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature 392, 831-835.
32. Sobel, R. E., Cook, R. G., Perry, C. A., Annunziato, A. T. and Allis, C. D. (1995) Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4. Proc. Natl. Acad. Sci. USA 92, 1237-1241.
33. Spencer, V. A. and Davie, J. R. (1999) Role of covalent modifications of histones in regulating gene expression. Gene 240, 1-12.
34. Struhl, K. (1998) Histone acetylation and transcriptional regulatory mechanisms. Genes Dev. 12, 599-606.
35. Strahl, B. D. and Allis, C. D. (2000) The language of covalent histone modifications. Nature 403, 41-45.
36. Taddei, A., Maison, C., Roche, D. and Almouzni, G. (2001) Reversible disruption of pericentric heterochromatin and centromere function by inhibiting deacetylases. Nature Cell Biol. 3, 114-120.
37. Turner, B. M. and Fellows, G. (1989) Specific antibodies reveal ordered and cell-cycle-related use of histone-H4 acetylation sites in mammalian cells. Eur. J. Biochem. 179, 131-139.
38. Verreault A., Kaufman, P. D., Kobayashi, R. and Stillman, B. (1996) Nucleosome assembly by a complex of CAF-1 and acetylated histories H3/H4. Cell 87, 95-104.
39. Wakefield, M. J., Keohane, A. M., Turner, B. M. and Marchall-Graves, J. A. (1997) Histone underacetylation is an ancient component of mammalian X chromosome inactivation. Proc. Natl. Acad. Sci. USA 94, 9665-9668.
40. Wako, T., Fukuda, M., Furushima-Shimogawara, R., Belyaev, N. D., Turner, B. M. and Fukui, K. (1998) Comparative analysis of topographic distribution of acetylated histone H4 by using confocal microscopy and a deconvolution system. Anal. Chim. Acta 365, 9-17.
41. Wako, T., Furushima-Shimogawara, R., Fukuda, M., Belyaev, N. D. and Fukui, K. (2002) Cell cycle dependent and lysine residue-specific dynamic changes of histone H4 acetylation in barley. Plant Mol. Biol. 49, 645-653.
42. Wako, T., Houben, A., Furushima-Shimogawara, R., Belyaev, N. D. and Fukui, K. (2003) Centromere-specific acetylation of histone H4 in barley detected through three-dimensional microscopy. Plant Mol. Biol. 51, 533-541.
43. Wang, X., Cheng, H., Moore, S. C. and Ausio, J. (2001) Effects of histone acetylation on the solubility and folding of the chromatin fiber. J. Biol. Chem. 276, 12764-12768.
44. White, D. A., Belyaev, N. D. and Turner, B. M. (1999) Preparation of site-specific antibodies to acetylated histones. Methods 19, 417-421.