Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints

Genetics

Volumn 154, Issue 1, 2000, Pages 397-412

  Künzel, Gottfried ^a   Korzun, Larissa ^a   Meister, Armin ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME 1; CHROMOSOME 2; CHROMOSOME 3; CHROMOSOME 4; CHROMOSOME 5; CHROMOSOME 6; CHROMOSOME 7; CHROMOSOME ANALYSIS; CHROMOSOME BREAKAGE; CHROMOSOME TRANSLOCATION; CYTOLOGY; DNA CONTENT; GENE MAPPING; GENOME; HUMAN; HUMAN CELL; MARKER GENE; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; UNINDEXED SEQUENCE;

CHROMOSOME MAPPING; GENOME, PLANT; HORDEUM; LINKAGE (GENETICS); POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; TRANSLOCATION, GENETIC;

EMBRYOPHYTA; HORDEUM VULGARE SUBSP. VULGARE; TRITICUM AESTIVUM;

EID: 0343986281     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (75)

1. BENNETT, M. D., and J. B. Smith, 1976 Nuclear DNA amounts in angiosperms. Phil. Trans. R. Soc. Lond. Ser. B 274: 227-274.
2. BLAKE, T. K., D. KADYRZHANOVA, K. W. SHEPHERD, A. K. M. R. ISLAM, P. L. LANGRIDGE et al., 1996 STS-PCR markers appropriate for wheat-barley introgression. Theor. Appl. Genet. 93: 826-832.
3. BUSCH, W., R. MARTIN and R. G. HERRMANN, 1994 Sensitivity enhancement of fluorescence in situ hybridization on plant chromosomes. Chromosome Res. 2: 15-20.
4. CIVARDI, L., Y. XIA, K. J. EDWARDS, P. S. SCHNABLE and B. J. NIKOLAU, 1994 The relationship between genetic and physical distances in the cloned α1-sH2 interval of the Zea mays L. genome. Proc. Natl. Acad. Sci. USA 91: 8268-8272.
5. CURTIS, C. A., and A. J. LUKASZEWSKI, 1991 Genetic linkage between C-bands and storage protein genes in chromosome 1 B of tetraploid wheat. Theor. Appl. Genet. 81: 245-252.
6. DELANEY, D. E., S. NASUDA, T. R. ENDO, B. S. GILL and S. H. HULBERT, 1995a Cytologically based physical maps of the group-2 chromosomes of wheat. Theor. Appl. Cenet. 91: 568-573.
7. DELANEY, D. E., S. NASUDA, T. R. ENDO, B. S. GILL and S. H. HULBERT, 1995b Cytologically based physical maps of the group 3 chromosomes of wheat. Theor. Appl. Genet. 91: 780-782.
8. DESCENZO, R. A., and R. P. WISE, 1996 Variation in the ratio of physical to genetic distance in intervals adjacent to the Mla locus on barley chromosome 1H. Mol. Gen. Genet. 251: 472-482.
9. DEVOS, K. M., and M. D. GALE, 1993 Extended genetic maps of the homoeologous group 3 chromosomes of wheat, rye and barley. Theor. Appl. Genet. 85: 649-652.
10. DEVOS, K. M., M. D. ATKINSON, C. N. CHINOY, C. J. LIU and M. D. GALE, 1992 RFLP-based genetic map of the homeologous group 3 chromosomes of wheat and rye. Theor. Appl. Genet. 83: 931-939.
11. DEVOS, K. M., T. MILLAN and M. D. GALE, 1993 Comparative RFLP maps of the homoeologous group-2 chromosomes of wheat, rye and barley. Theor. Appl. Genet. 85: 784-792.
12. DEVOS, K. M., J. DUBCOVSKY, J. DVORAK, C. N. CHINOY and M. D. GALE, 1995 Structural evolution of wheat chromosomes 4A, 5A, and 7B and its impact on recombination. Theor. Appl. Genet. 91: 282-288.
13. DUBCOVSKY, J., M.-C. LUO, G.-Y. ZHONG, R. BRANSTEITTER, A. DESAI et al., 1996 Genetic map of diploid wheat Triticum monococcum L., and its comparison with maps of Hordeum vulgare L. Genetics 143: 983-999.
14. DVORÁK, J., and K. C. CHEN, 1984 Distribution of nonstructural variation between wheat cultivars along chromosome arm 6Bp: evidence from the linkage map and the physical map of the arm. Genetics 106: 325-333.
15. ENDO, T. R., 1988 Induction of chromosomal structural changes by a chromosome of Aegilops cylindrica L. in common wheat. J. Hered. 79: 366-370.
16. ENDO, T. R., and B. S. GILL, 1996 The deletion stocks of common wheat. J. Hered. 87: 295-307.
17. ERPELDING, J. E., N. K. BLAKE, T. K. BLAKE and L. E. TALBERT, 1996 Transfer of sequence tagged site PCR markers between wheat and barley. Genome 39: 802-810.
18. FUKUI, K., Y. KAMISUGI and F. SAKAI, 1994 Physical mapping of 5S rDNA loci by direct-cloned biotinylated probes in barley chromosomes. Genome 37: 105-111.
19. GANAL, M. W., N. D. YOUNG and S. D. TANKSLEY, 1989 Pulsed field gel elertrophoresis and physical mapping of large DNA fragments in the Tm-2a region of chromosome 9 in tomato. Mol. Gen. Genet. 215: 395-400.
20. GILL, K. S., and B. S. GILL, 1991 Mapping in the realm of polyploidy: the wheat model. BioEssays 16: 841-846.
21. GILL, K. S., B. S. GILL and T. R. ENDO, 1993a A chromosome region-specific mapping strategy reveals gene-rich telomeric ends in wheat. Chromosoma 102: 374-381.
22. GILL, K. S., B. S. GILL, T. R. ENDO and Y. MUKAI, 1993b Fine physical mapping of Ph1, a chromosome pairing regulator gene in polyploid wheat. Genetics 134: 1231-1236.
23. GILL, K. S., B. S. GILL, T. R. ENDO and E. V. BOYKO, 1996a Identification and high-density mapping of gene-rich regions in chromosome group 5 of wheat. Genetics 143: 1001-1012.
24. GILL, K. S., B. S. GILL, T. R. ENDO and T. TAYLOR, 1996b Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat. Genetics 144: 1883-1891.
25. GRANER, A., A. JAHOOR, J. SCHONDELMAIER, H. SIEDLER, K. PILLEN et al., 1991 Construction of an RFLP map of barley. Theor. Appl. Genet. 83: 250-256.
26. GRANER, A., E. BAUER, A. KELLERMANN, S. KIRCHNER, J. K. MURAYA et al., 1993 Progress of RFLP-map construction in winter barley. Barley Genet. Newslett. 23: 53-59.
27. HAGBERG, A., and G. HAGBERG, 1969 Use of induced structural rearrangements in plant breeding, pp. 647-653 in Induced Mutations in Plants (Proceedings from Pullman Symposium), edited by the International Atomic Energy Agency (IAEA) and Food and Agriculture Organization of the United Nations. IAEA, Vienna.
28. HESLOP-HARRISON, J. S., 1991 The molecular cytogenetics of plants. J. Cell Sci. 100: 15-21.
29. HOHMANN, U., T. R. ENDO, K. S. GILL and B. S. GILL, 1991 Comparison of genetic and physical maps of group 7 chromosomes from Triticum aestivum L. Mol. Gen. Genet. 245: 644-653.
30. HOHMANN, U., T. R. ENDO, R. G. HERRMANN and B. S. GILL, 1995a Characterization of deletions in common wheat induced by an Aegilops cylindrica chromosome: detection of multiple chromosome rearrangements. Theor. Appl. Genet. 91: 611-617.
31. HOHMANN, U., A. GRANER, T. E. ENDO, B. S. GILL and R. G. HERRMANN, 1995b Comparison of wheat physical maps with barley linkage maps for group 7 chromosomes. Theor. Appl. Genet. 91: 618-626.
32. HOLM, G., 1960 An inversion in barley. Hereditas 46: 274-278.
33. ISLAM, A. K. M. R., 1983 Ditelosomic additions of barley chromosomes to wheat, pp. 233-238 in Proceedings from the 6th International Wheat Symposium, edited by S. SAKAMOTO. Kyoto University Press, Kyoto, Japan.
34. JENSEN, J., and I. LINDE-LAURSEN, 1992 Statistical evaluation of length measurements on barley chromosomes with a proposal for a new nomenclature for symbols and positions of cytological markers. Hereditas 117: 51-59.
35. KAKEDA, K., and H. YAMAGATA, 1991 Localization of breakpoints in barley reciprocal translocations involving chromosome 4 by banding techniques, pp. 280-282 in Barley Genetics VI (Proceedings from the Sixth International Barley Genetic Symposium, July 22-27, 1991, Helsingborg, Sweden), Vol. 1, edited by L. MUNCK, K. KIRKEGAARD and B. JENSEN. Organizing Committee of the Nordic Countries Sixth International Barley Genetics Symposium, Helsingborg, Sweden.
36. KLEINHOFS, A., A. KILIAN, M. A. SAGHAI MAROOF, R. M. BIYASHEV, P. HAYES et al., 1993 A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome. Theor. Appl. Genet. 86: 705-712.
37. KOTA, R. S., K. S. GILL, B. S. GILL and T. R. ENDO, 1993 A cytogenetically based physical map of chromosome 1B in common wheat. Genome 36: 548-554.
38. KREFT, I., 1969 Cytological studies on an inversion in barley. Hereditas 62: 14-24.
39. KÜNZEL, G., 1982 Differences between genetic and physical centromere distances in the case of two genes for male sterility in barley. Theor. Appl. Genet. 64: 25-29.
40. KÜNZEL, G., 1992 Coordinator's report: translocations and balanced tertiary trisomics. Barley Genet. Newslett. 22: 80-102.
41. KÜNZEL, G., and L. KORZUN, 1996 Physical mapping of cereal chromosomes, with special emphasis on barley, pp. 197-206 in Fifth International Oat Conference and Seventh International Barley Genetics Symposium: Proceedings, edited by G. SCOLES and H. ROSSNAGEL. University Extension Press, University of Saskatchewan, Saskatchewan, Canada.
42. KÜNZEL, G., A. SOROKIN and F. MARTHE, 1995 Progress in relating genetic to physical distances of marker sequences on micro-isolated barley chromosomes, pp. 149-155 in Kew Chromosome Conferrence IV, edited by P. E. BRANDHAM and M. D. BENNETT. Royal Botanic Gardens, Kew, England.
43. LAHAYE, T., K. SHIRASU and P. SCHULZE-LEFERT, 1998 Chromosome landing at the Rar1 locus. Mol. Gen. Genet. 260: 92-101.
44. LAPITAN, N. L. V., S. E. BROWN, W. KENNARD, J. L. STEPHENS and D. L. KNUDSON, 1997 FISH physical mapping with barley BAC clones. Plant J. 11: 149-156.
45. LEHFER, H., W. BUSCH, R. MARTIN and R. G. HERRMANN, 1993 Localization of the B-hordein locus on barley chromosomes using fluorescence in situ hybidization. Chromosoma 102: 428-432.
46. LETTCH, I. J., and J. S. HESLOP-HARRISON, 1993 Physical mapping of four sites of 5S rDNA sequences and one site of the α-amylase-2 gene in barley (Hordeum vulgare). Genome 36: 517-523.
47. LINDE-LAURSEN, I., 1982 Linkage map of the long arm of barley chromosome 3 using C-bands and marker genes. Heredity 49: 27-35.
48. LINDE-LAURSEN, I., 1988 Giemsa C-banding of barley chomosomes. 5. Localization of breakpoints in 70 reciprocal translocations. Hereditas 108: 65-76.
49. LINDE-LAURSEN, I., J. S. HESLOP-HARRISON, K. W. SHEPHERD and S. TAKETA, 1997 The barley genome and its relationship with the wheat genomes. A survey with an internationally agreed recommendation for barley chromosome nomenclature. Hereditas 126: 1-16.
50. MARTHE, F., and G. KÜNZEL, 1994 Localization of translocation breakpoints in somatic metaphase chromosomes of barley. Theor. Appl. Genet. 89: 240-248.
51. MICHALEK, W., G. KÜNZEL and A. GRANER, 1999 Sequence analysis and gene identification in a set of mapped RFLP markers in barley Hordeum vulgare. Genome 42: 849-853.
52. MICKELSON-YOUNG, L., T. R. ENDO and B. S. GILL, 1995 Acytogenetic ladder-map of the wheat homoeologous group-4 chromosomes. Theor. Appl. Genet. 90: 1007-1011.
53. NAMUTH, D. M., N. L. V. LAPITAN, K. S. GILL and B. S. GILL, 1994 Comparative RFLP mapping of Hordeum vulgare and Triticum tauschii. Theor. Appl. Genet. 89: 865-872.
54. NELSON, J. C., A. E. VAN DEYNZE, E. AUTRIQUE, M. E. SORRELLS, Y. H. LU et al., 1995a Molecular mapping of wheat. Homoeologous group 2. Genome 38: 516-524.
55. NELSON, J. C., A. E. VAN DEYNZE, E. AUTRIQUE, M. E. SORRELLS, Y. H. LU et al. 1995b Molecular mapping of wheat. Homoeologous group 3. Genome 38: 525-533.
56. NILAN, R. A., J. B. POWELL, B. V. CONGER and C. E. MUIR, 1968 Induction and utilization of inversions and mutations in barley, pp. 193-203 in Mutations in Plant Breeding II (Panel Proc. Ser. - Proc. of a Research Co-ordination Meeting on the Use of Induced Mutations in Plant Breeding, edited by the International Atomic Energy Agency (IAEA) and Food and Agriculture Organization of the United Nations. IAEA, Vienna.
57. PEDERSEN, C., H. GIESE and I. LINDE-LAURSEN, 1995 Towards an integration of the physical and the genetic chromosome map of barley by in situ hybridization. Hereditas 123: 77-88.
58. RAMAGE, R. T., 1971 Reports from coordinators: translocations and balanced tertiary trisomics. Barley Genet. Newslett. 1: 74-80.
59. RAMAGE, R. T., 1975 Reports from coordinators: translocations and balanced tertiary trisomics. Barley Genet. Newslett. 5: 76-83.
60. RAMAGE, R. T., 1985 Cytogenetics, pp. 127-154 in Barley (Agronomy Monogr. No. 26), edited by D. C. RASMUSSON. American Society of Agronomy, Madison, WI.
61. SCHNABLE, P. S., A.-P. HSIA and B. J. NIKOLAU, 1998 Genetic recombination in plants. Curr. Opin. Plant Biol. 1: 123-129.
62. SCHUBERT, I., F. SHI, J. FUCHS and T. R. ENDO, 1998 An efficient screening for terminal deletions and translocations of barley chromosomes added to common wheat. Plant J. 14: 489-495.
63. SCHWARZ, G., W. MICHALEK, V. MOHLER, G. WENZEL and A. JAHOOR, 1999 Chromosome landing at the Mla locus in barley (Hordeum vulgare L.) by means of high-resolution mapping with AFLP markers. Theor. Appl. Genet. 98: 521-530.
64. 2 Fusarium oxysporum resistance locus in tomato. Mol. Gen. Genet. 231: 179-185.
65. SIMONS, G., T. VAN DER LEE, P. DIERGAARDE, R. VAN DAELEN, J. GOENENDIJK et al., 1997 ALFP-based fine mapping of the Mlo gene to a 30-kb DNA segment of the barley genome. Genomics 44: 61-70.
66. SINGH, R. J., and T. TSUCHIYA, 1982 Identification and designation of telocentric chromosomes in barley by means of Giemsa N-banding technique. Theor. Appl. Genet. 64: 13-24.
67. SNAPE, J. W., R. B. FLAVELL, M. O'DELL, W. G. HUGHES and P. I. PAYNE, 1985 Intrachromosomal mapping of the nucleolar organizer region relative to three marker loci on chromosome 1B of wheat (Triticum aestivum). Theor. Appl. Genet. 69: 263-270.
68. SOROKIN, A., F. MARTHE, A. HOUBEN, U. PICH, A. GRANER et al., 1994 Polymerase chain reaction mediated localization of RFLP clones to microisolated translocation chromosomes of barley. Genome 37: 550-555.
69. TANKSLEY, S. D., M. W. GANAL and G. B. MARTIN, 1995 Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. Trends Genet. 11: 63-68.
70. TRAGOONRUNG, S., V. KANAZIN, P. M. HAYES and T. K. BLAKE, 1992 Sequence-tagged-site-facilitated PCR for barley genome mapping. Theor. Appl. Genet. 84: 1002-1008.
71. UMEHARA, Y., A. INAGAKI, H. TANOUE, Y. YASUKOCHI, Y. NAGAMURA et al. 1995 Construction and characterization of rice YAC library for physical mapping. Mol. Breed. 1: 79-89.
72. VAN DEYNZE, A. E., J. DUBCOVSKY, K. S. GILL, J. C. NELSON, M. E. SORRELLS et al., 1995 Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat. Genome 38: 45-59.
73. WANG, M. L., M. D. ATKINSON, C. N. CHINOY, K. M. DEVOS and M. D. GALE, 1992 Comparative RFLP-based genetic maps of barley chromosome 5 (1H) and rye chromosome 1R. Theor. Appl. Genet. 84: 339-344.
74. WERNER, J. E., T. R. ENDO and B. S. GILL, 1992 Toward a cytogenetically based physical map of the wheat genome. Proc. Natl. Acad. Sci. USA 89: 11307-11311.
75. ZHANG, H.-B., G. B. MARTIN, S. D. TANKSLEY and R. A. WING, 1994 Map-based cloning in crop plants: tomato as a model system. II. Isolation and characterization of a set of overlapping yeast artificial chromosomes encompassing the jointless locus. Mol. Gen. Genet. 244: 613-621.