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Volumn 61, Issue 3, 2005, Pages 481-491

Prediction and evolutionary information analysis of protein solvent accessibility using multiple linear regression

Author keywords

Multiple linear regression; Solvent accessibility; Structure prediction

Indexed keywords

ALANINE; AMINO ACID; ARGININE; ASPARAGINE; ASPARTIC ACID; CYSTEINE; GLUTAMIC ACID; GLUTAMINE; GLYCINE; HISTIDINE; ISOLEUCINE; LEUCINE; LYSINE; METHIONINE; PHENYLALANINE; PROLINE; PROTEIN; SERINE; THREONINE; TRYPTOPHAN; TYROSINE; VALINE;

EID: 27544475311     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.20620     Document Type: Article
Times cited : (37)

References (20)
  • 1
    • 0027169638 scopus 로고
    • Improved prediction of protein secondary structure by using sequence profiles and neural networks
    • Rost B, Sander C. Improved prediction of protein secondary structure by using sequence profiles and neural networks. Proc Natl Acad Sci USA 1993;90:7558-7562.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 7558-7562
    • Rost, B.1    Sander, C.2
  • 2
    • 0025039476 scopus 로고
    • Predicting surface exposure of amino acids from protein sequences
    • Holbrook SR, Muskal SM, Kim SH. Predicting surface exposure of amino acids from protein sequences. Protein Eng 1990;3:659-665.
    • (1990) Protein Eng , vol.3 , pp. 659-665
    • Holbrook, S.R.1    Muskal, S.M.2    Kim, S.H.3
  • 3
    • 0028109886 scopus 로고
    • Conservation and prediction of solvent accessibility in protein families
    • Rost B, Sander C. Conservation and prediction of solvent accessibility in protein families. Proteins 1994;20:216-226.
    • (1994) Proteins , vol.20 , pp. 216-226
    • Rost, B.1    Sander, C.2
  • 4
    • 0035102734 scopus 로고    scopus 로고
    • RCNPRED: Prediction of the residue co-ordination numbers in proteins
    • Fariselli P, Casadio R. RCNPRED: prediction of the residue co-ordination numbers in proteins. Bioinformatics 2001;17:202-204.
    • (2001) Bioinformatics , vol.17 , pp. 202-204
    • Fariselli, P.1    Casadio, R.2
  • 5
    • 0036568293 scopus 로고    scopus 로고
    • Prediction of coordination number and relative solvent accessibility in proteins
    • Pollastri G, Baldi P, Fariselli P, Casadio R. Prediction of coordination number and relative solvent accessibility in proteins. Proteins 2002;47:142-153.
    • (2002) Proteins , vol.47 , pp. 142-153
    • Pollastri, G.1    Baldi, P.2    Fariselli, P.3    Casadio, R.4
  • 6
    • 0036303121 scopus 로고    scopus 로고
    • NETASA: Neural network based prediction of solvent accessibility
    • Ahmad S, Gromiha MM. NETASA: neural network based prediction of solvent accessibility. Bioinformatics 2002;18:819-824.
    • (2002) Bioinformatics , vol.18 , pp. 819-824
    • Ahmad, S.1    Gromiha, M.M.2
  • 7
    • 0037340834 scopus 로고    scopus 로고
    • Real value prediction of solvent accessibility from amino acid sequence
    • Ahmad S, Gromiha MM, Sarai S. Real value prediction of solvent accessibility from amino acid sequence. Proteins 2003;50:629-635.
    • (2003) Proteins , vol.50 , pp. 629-635
    • Ahmad, S.1    Gromiha, M.M.2    Sarai, S.3
  • 8
    • 4043052866 scopus 로고    scopus 로고
    • Accurate prediction of solvent accessibility using neural networks-based regression
    • Adamczak R, Porollo A, Meller J. Accurate prediction of solvent accessibility using neural networks-based regression. Proteins 2004;56(4):753-767.
    • (2004) Proteins , vol.56 , Issue.4 , pp. 753-767
    • Adamczak, R.1    Porollo, A.2    Meller, J.3
  • 9
    • 0037103004 scopus 로고    scopus 로고
    • Prediction of protein solvent accessibility using support vector machines
    • Yuan Z, Burrage K, Mattick JS. Prediction of protein solvent accessibility using support vector machines. Proteins 2002;48(3): 566-570.
    • (2002) Proteins , vol.48 , Issue.3 , pp. 566-570
    • Yuan, Z.1    Burrage, K.2    Mattick, J.S.3
  • 10
    • 1042268067 scopus 로고    scopus 로고
    • Prediction of protein relative solvent accessibility with support vector machines and long-range interaction 3D local descriptor
    • Kim H, and Park H. Prediction of protein relative solvent accessibility with support vector machines and long-range interaction 3D local descriptor. Proteins 2004;54(3):557-562.
    • (2004) Proteins , vol.54 , Issue.3 , pp. 557-562
    • Kim, H.1    Park, H.2
  • 11
    • 6344258643 scopus 로고    scopus 로고
    • Prediction of protein accessible surface areas by support vector regression
    • Yuan Z, Huang B. Prediction of protein accessible surface areas by support vector regression. Proteins 2004;57:558-564.
    • (2004) Proteins , vol.57 , pp. 558-564
    • Yuan, Z.1    Huang, B.2
  • 12
    • 0035283141 scopus 로고    scopus 로고
    • Prediction of protein surface accessibility with information theory
    • Naderi-Manesh H, Sadeghi M, Arab S, Movahedi AA. Prediction of protein surface accessibility with information theory. Proteins 2001;42:452-459.
    • (2001) Proteins , vol.42 , pp. 452-459
    • Naderi-Manesh, H.1    Sadeghi, M.2    Arab, S.3    Movahedi, A.A.4
  • 13
    • 0033459568 scopus 로고    scopus 로고
    • The bottom line for prediction of residue solvent accessibility
    • Richardson CJ, Barlow DJ. The bottom line for prediction of residue solvent accessibility. Protein Eng 1999;12:1051-1054.
    • (1999) Protein Eng , vol.12 , pp. 1051-1054
    • Richardson, C.J.1    Barlow, D.J.2
  • 14
    • 0033768867 scopus 로고    scopus 로고
    • Prediction residue solvent accessibility from protein sequence by considering the sequence environment
    • Carugo O. Prediction residue solvent accessibility from protein sequence by considering the sequence environment. Protein Eng 2000;13:607-609.
    • (2000) Protein Eng , vol.13 , pp. 607-609
    • Carugo, O.1
  • 15
    • 0029885547 scopus 로고    scopus 로고
    • Prediction solvent accessibility, higher accuracy using Bayesian statistics and optimized residue substitution classes
    • Thompson MJ, Goldstein RA. Prediction solvent accessibility, higher accuracy using Bayesian statistics and optimized residue substitution classes. Proteins 1996;25:38-47.
    • (1996) Proteins , vol.25 , pp. 38-47
    • Thompson, M.J.1    Goldstein, R.A.2
  • 16
    • 7044264212 scopus 로고    scopus 로고
    • Look-up tables for protein solvent accessibility prediction and nearest neighbor effect analysis
    • Wang J-Y, Ahmad S, Gromiha MM and Sarai A. Look-up tables for protein solvent accessibility prediction and nearest neighbor effect analysis. Biopolymers 2004;75:209-216.
    • (2004) Biopolymers , vol.75 , pp. 209-216
    • Wang, J.-Y.1    Ahmad, S.2    Gromiha, M.M.3    Sarai, A.4
  • 17
    • 0035189668 scopus 로고    scopus 로고
    • New method for accurate prediction of solvent accessibility from protein sequence
    • Li X, Pan X-M. New method for accurate prediction of solvent accessibility from protein sequence. Proteins 2001;42:1-5.
    • (2001) Proteins , vol.42 , pp. 1-5
    • Li, X.1    Pan, X.-M.2
  • 18
    • 0034663597 scopus 로고    scopus 로고
    • Application of multiple sequence alignment profiles to improve protein secondary structure prediction
    • Cuff JA, Barton GJ. Application of multiple sequence alignment profiles to improve protein secondary structure prediction. Proteins 2000;40:502-511.
    • (2000) Proteins , vol.40 , pp. 502-511
    • Cuff, J.A.1    Barton, G.J.2
  • 19
    • 0023803244 scopus 로고
    • Predicting the secondary structure of globular proteins using neuron netwok models
    • Qian N, Sejnowski T. Predicting the secondary structure of globular proteins using neuron netwok models. J Mol Biol 1988;202(4): 865-884.
    • (1988) J Mol Biol , vol.202 , Issue.4 , pp. 865-884
    • Qian, N.1    Sejnowski, T.2
  • 20
    • 0346364657 scopus 로고    scopus 로고
    • Amino acid properties and consequences of substitutions
    • Barnes MR, Gray IC, editors. New York: Wiley
    • Betts MJ, Russell RB. Amino acid properties and consequences of substitutions. In: Barnes MR, Gray IC, editors. Bioinformatics for geneticists. New York: Wiley; 2003. p 297-299.
    • (2003) Bioinformatics for Geneticists , pp. 297-299
    • Betts, M.J.1    Russell, R.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.