X-ray-induced deletion complexes in embryonic stem cells on mouse chromosome 15

Mammalian Genome

Volumn 16, Issue 9, 2005, Pages 661-671

  Chick, Wallace S H ^a   Mentzer, Sarah E ^b   Carpenter, Donald A ^b   Rinchik, Eugene M ^a,c   Johnson, Dabney ^b   You, Yun ^b  

^a UNIVERSITY OF TENNESSEE   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

^c Taconic   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARNITINE PALMITOYLTRANSFERASE; TRANSCRIPTION FACTOR SOX10;

ANIMAL CELL; ARTICLE; CHROMOSOME 15; CHROMOSOME DELETION; DROSOPHILA; EMBRYO; EMBRYONIC STEM CELL; GENE DELETION; GENE FREQUENCY; GENE FUNCTION; GENE LOCATION; GENE LOCUS; GENETICS; GENOMICS; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; X RAY ANALYSIS;

ANIMALS; CHROMOSOME DELETION; CHROMOSOMES, MAMMALIAN; DNA-BINDING PROTEINS; EXTRACELLULAR MATRIX PROTEINS; GENE COMPONENTS; GENOMICS; GLYCOPROTEINS; HIGH MOBILITY GROUP PROTEINS; IN SITU HYBRIDIZATION, FLUORESCENCE; MICE; STEM CELLS; TRANSCRIPTION FACTORS; X-RAYS;

EID: 26944469570     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-005-0011-5     Document Type: Article

References (66)

1. Bell JA, Rinchik EM, Raymond S, Suffolk R, Jackson IJ (1995) A high-resolution map of the brown (b, Tyrp1) deletion complex of mouse chromosome 4. Mamm Genome 6:389-395
2. Bergstrom DE, Bergstrom RA, Munroe RJ, Lee BK, Browning VL, et al. (2003) Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome 14, 817-829
3. Britsch S, Goerich DE, Riethmacher D, Peirano RI, Rossner M, et al. (2001) The transcription factor Sox10 is a key regulator of peripheral glial development. Genes Dev 15, 66-78
4. Browning VL, Bergstrom RA, Daigle S, Schimenti JC (2002) A haplolethal locus uncovered by deletions in the mouse T complex. Genetics 160, 675-682
5. Bultman SJ, Klebig ML, Michaud EJ, Sweet HO, et al. (1994) Molecular analysis of reverse mutations from nonagouti (a) to black-and-tan (a(t)) and white-bellied agouti (Aw) reveals alternative forms of agouti transcripts. Genes Dev 8, 481-490
6. Cai WW, Mao JH, Chow CW, Damani S, Balmain A, et al. (2002) Genome-wide detection of chromosomal imbalances in tumors using BAC microarrays. Nat Biotechnol 20, 393-396
7. Chick WS, Mentzer SE, Carpenter DA, Rinchik EM, You Y (2004) Modification of an existing chromosomal inversion to engineer a balancer for mouse chromosome 15. Genetics 167, 889-895
8. Chung YJ, Jonkers J, Kitson H, Fiegler H., Humphray S, et al. (2004) A whole-genome mouse BAC microarray with 1-Mb resolution for analysis of DNA copy number changes by array comparative genomic hybridization. Genome Res 14, 188-196
9. Culiat CT, Stubbs LJ, Woychik RP, Russell LB, Johnson DK, et al. (1995) Deficiency of the beta 3 subunit of the type A gamma-aminobutyric acid receptor causes cleft palate in mice. Nat Genet 11, 344-346
10. Davisson MT, Roderick TH, Akeson EC, Hawes NL, Sweet HO (1990) The hairy ears (Eh) mutation is closely associated with a chromosomal rearrangement in mouse chromosome 15. Genet Res 56, 167-178
11. Dhar MS, Johnson KK (1997) A microsatellite map of the pink-eyed dilution (p) deletion complex in mouse Chromosome 7. Mamm Genome 8, 386
12. Dietrich WF, Miller JC, Steen RG, Merchant M, Damron D, et al. (1994) A genetic map of the mouse with 4006 simple sequence length polymorphisms. Nat Genet 7, 220-245
13. Fox M, Povey S (2000) Florescent in situ hybridization (FISH) to mouse chromosomes. In: Mouse Genetics and Transgenics: A practical Approach. Jackson I, Abbott C (eds) (New York: Oxford University Press), pp 154-169
14. Gluecksohn-Waelsch S (1979) Genetic control of morphogenetic and biochemical differentiation: lethal albino deletions in the mouse. Cell 16, 225-237
15. Hentges KE, Justice MJ (2004) Checks and balancers: balancer chromosomes to facilitate genome annotation. Trends Genet 20, 252-259
16. Holdener Kenny B, Sharan SK, Magnuson T (1992) Mouse albino-deletions: from genetics to genes in development. Bioessays 14, 831-839
17. Johnson DK, Stubbs LJ, Culiat CT, Montgomery CS, Russell LB, et al. (1995) Molecular analysis of 36 mutations at the mouse pink-eyed dilution (p) locus. Genetics 141, 1563-1571
18. Justice MJ, Zheng B, Woychik RP, Bradley A (1997) Using targeted large deletions and high-efficiency N-ethyl-N-nitrosourea mutagenesis for functional analyses of the mammalian genome. Methods 13, 423-436
19. King TR, Christianson GJ, Mitchell MJ, Bishop CE, Scott D, et al. (1994) Deletion mapping by immunoselection against the H-Y histocompatibility antigen further resolves the Sxra region of the mouse Y chromosome and reveals complexity of the Hya locus. Genomics 24, 159-168
20. Kingsley DM, Jenkins NA, Copeland NG (1989) A molecular genetic linkage map of mouse chromosome 9 with regional localizations for the Gsta, T3g, Ets-1 and Ldlr loci. Genetics 123, 165-172
21. Kushi A, Edamura K, Noguchi M, Akiyama K, Nishi Y, et al. (1998) Generation of mutant mice with large chromosomal deletion by use of irradiated ES cells - analysis of large deletion around hprt locus of ES cell. Mamm Genome 9, 269-273
22. Lane PW, Liu HM (1984) Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered 75, 435-439
23. LePage DF, Church DM, Millie E, Hassold TJ, Conlon RA (2000) Rapid generation of nested chromosomal deletions on mouse chromosome 2. Proc Natl Acad Sci U S A 97, 10471-10476
24. Lindsay EA, Botta A, Jurecic V, Carattini-Rivera S, Cheah YC, et al. (1999) Congenital heart disease in mice deficient for the DiGeorge syndrome region. Nature 401, 379-383
25. Marker PC, Seung K, Bland AE, Russell LB, Kingsley DM (1997) Spectrum of Bmp5 mutations from germline mutagenesis experiments in mice. Genetics 145, 435-443
26. Naf D, Wilson LA, Bergstrom RA, Smith RS, Goodwin NC, et al. (2001) Mouse models for the Wolf-Hirschhorn deletion syndrome. Hum Mol Genet 10, 91-98
27. Nagy A, Gertsenstein M, Vintersten K, Behringer RR (2003) Manipulating the Mouse Embryo, a laboratory manual, 3rd ed. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press)
28. Nishijima I, Mills A, Qi Y, Mills M, Bradley A (2003) Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis 36, 142-148
29. O'Brien TP, Metallinos DL, Chen H, Shin MK, Tilghman SM (1996) Complementation mapping of skeletal and central nervous system abnormalities in mice of the piebald deletion complex. Genetics 143, 447-461
30. Paratore C, Hagedorn L, Floris J, Hari L, Kleber M, et al. (2002) Cell-intrinsic and cell-extrinsic cues regulating lineage decisions in multipotent neural crest-derived progenitor cells. Int J Dev Biol 46, 193-200
31. Parks AL, Cook KR, Belvin M, Dompe NA, Fawcett R, et al. (2004) Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome. Nat Genet 36, 288-292
32. Ramirez-Solis R, Rivera-Perez J, Wallace J, Wims M, Zheng H, et al. (1992) Genomic DNA microextraction: A method to screen numerous samples. Anal Biochem 201, 331-335
33. Ramirez-Solis RA, Davis C, Bradley A (1993) Gene targeting in embryonic stem cell. In: Methods in Enzymology: Guide to Techniques in Mouse Development, Wassarman PM, DePamphilis ML (eds.) (New York: Academic Press) pp 855-878
34. Ramirez-Solis R, Liu P, Bradley A (1995) Chromosome engineering in mice. Nature 378, 720-724
35. Rinchik EM (1994) Molecular genetics of the brown (b)-locus region of mouse chromosome 4. II. Complementation analyses of lethal brown deletions. Genetics 137, 855-865
36. Rinchik EM (2000) Developing genetic reagents to facilitate recovery, analysis, and maintenance of mouse mutations. Mamm Genome 11, 489-499
37. Rinchik EM, Carpenter DA (1999) N-ethyl-N-nitrosourea mutagenesis of a 6- to 11-cM subregion of the Fah-Hbb interval of mouse chromosome 7: Completed testing of 4557 gametes and deletion mapping and complementation analysis of 31 mutations. Genetics 152, 373-383
38. Rinchik EM, Russell LB, Copeland NG, Jenkins NA (1986) Molecular genetic analysis of the dilute-short ear (d-se) region of the mouse. Genetics 112, 321-342
39. Rinchik EM, Bangham JW, Hunsicker PR, Cacheiro NL, Kwon BS, et al. (1990a) Genetic and molecular analysis of chlorambucil-induced germ-line mutations in the mouse. Proc Natl Acad Sci U S A 87, 1416-1420
40. Rinchik EM, Carpenter DA, Selby PB (1990b) A strategy for fine-structure functional analysis of a 6- to 11-centimorgan region of mouse chromosome 7 by high-efficiency mutagenesis. Proc Natl Acad Sci U S A 87, 896-900
41. Rinchik EM, Bell JA, Hunsicker PR, Friedman JM, Jackson IJ, et al. (1994) Molecular genetics of the brown (b)-locus region of mouse chromosome 4. I. Origin and molecular mapping of radiation- and chemical-induced lethal brown deletions. Genetics 137, 845-854
42. Rinchik EM, Carpenter DA, Johnson DK (2002) Functional annotation of mammalian genomic DNA sequence by chemical mutagenesis: a fine-structure genetic mutation map of a 1- to 2-cM segment of mouse chromosome 7 corresponding to human chromosome 11p14-p15. Proc Natl Acad Sci U S A 99, 844-849
43. Rogers I, Okano K, Varmuza S (1997) Paternal transmission of the mouse Thp mutation is lethal in some genetic backgrounds. Dev Genet 20 23-28
44. Roix JJ, Hagge-Greenberg A, Bissonnette DM, Rodick S, Russell LB, et al. (2001) Molecular and functional mapping of the piebald deletion complex on mouse Chromosome 14. Genetics 157, 803-815
45. Russell WL (1951) X-ray-induced mutations in mice, Vol XVI (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press)
46. Russell LB (1971) Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res 11, 107-123
47. Russell LB (2004) Effects of male germ-cell stage on the frequency, nature, and spectrum of induced specific-locus mutations in the mouse. Genetica 122, 25-36
48. Russell LB, DeHamer DL, Borman LS (1974) New functional units near the c-locus in the mouse. Genetics 77, s55
49. Russell L, Montgomery C, Raymer G (1982a) Analysis of the albino-locus region of the mouse: IV. Characterization of 34 deficiencies. Genetics 100, 427-453
50. Russell LB, Montgomery CS, Raymer GD (1982b) Analysis of the albino-locus region of the mouse: IV. Characterization of 34 deficiencies. Genetics 100, 427-453
51. Russell LB, Montgomery CS, Cacheiro NL, Johnson DK (1995) Complementation analyses for 45 mutations encompassing the pink-eyed dilution (p) locus of the mouse. Genetics 141, 1547-1562
52. Ryder E, Blows F, Ashburner M, Bautista-Llacer R, Coulson D, et al. (2004) The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster. Genetics 167, 797-813
53. Schimenti J, Bucan M (1998) Functional genomics in the mouse: phenotype-based mutagenesis screens. Genome Res 8, 698-710
54. Schimenti JC, Libby BJ, Bergstrom RA, Wilson LA, Naf D, et al. (2000) Interdigitated deletion complexes on mouse chromosome 5 induced by irradiation of embryonic stem cells. Genome Res 10, 1043-1050
55. Schumacher A, Faust C, Magnuson T (1996) Positional cloning of a global regulator of anterior-posterior patterning in mice. Nature 384, 648
56. Siracusa LD, Russell LB, Eicher EM, Corrow DJ, Copeland NG, et al. (1987) Genetic organization of the agouti region of the mouse. Genetics 117, 93-100
57. Southard-Smith EM, Kos L, Pavan WJ (1998) Sox10 mutation disrupts neural crest development in Dom Hirschsprung mouse model. Nat Genet 18, 60-64
58. Su H, Wang X, Bradley A (2000) Nested chromosomal deletions induced with retroviral vectors in mice. Nat Genet 24, 92-95
59. Thomas JW, LaMantia C, Magnuson T (1998) X-ray-induced mutations in mouse embryonic stem cells. Proc Natl Acad Sci U S A 95, 1114-1119
60. Truett GE, Heeger P, Mynatt RL, Truett AA, Walker JA, et al. (2000) Preparation of PCR-quality mouse genomic DNA with hot sodium hydroxide and tris (HotSHOT). Biotechniques 29, 52-54
61. Woychik RP, Generoso WM, Russell LB, Cain KT, Cacheiro NL, et al. (1990) Molecular and genetic characterization of a radiation-induced structural rearrangement in mouse chromosome 2 causing mutations at the limb deformity and agouti loci. Proc Natl Acad Sci U S A 87, 2588-2592
62. Yingling J, Toyo-Oka K, Wynshaw-Boris A (2003) Miller-Dieker syndrome: analysis of a human contiguous gene syndrome in the mouse. Am J Hum Genet 73, 475-488
63. You Y, Bergstrom R, Klemm M, Lederman B, Nelson H, et al. (1997a) Chromosomal deletion complexes in mice by radiation of embryonic stem cells. Nat Genet 15, 285-288
64. You Y, Browning VL, Schimenti JC (1997b) Generation of radiation-induced deletion complexes in the mouse genome using embryonic stem cells. Methods 13, 409-421
65. You Y, Bersgtram R, Klemm M, Nelson H, Jaenisch R, et al. (1998) Utility of C57BL/6J x 129/SvJae embryonic stem cells for generating chromosomal deletions: tolerance to gamma radiation and microsatellite polymorphism. Mamm Genome 9, 232-234
66. Zheng B, Sage M, Cai WW, Thompson DM, Tavsanli BC, et al. (1999) Engineering a mouse balancer chromosome. Nat Genet 22, 375-378