Interfacial metal and antibody recognition

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 41, 2005, Pages 14575-14580

  Zhou, Tongqing ^a   Hamer, Dean H ^b   Hendrickson, Wayne A ^c   Sattentau, Quentin J ^d   Kwong, Peter D ^a  

^a NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^b NATIONAL CANCER INSTITUTE   (United States)

^c Och Spine at New York Presbyterian Hospitals   (United States)

^d UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

Antibody Q425; CD4; Crystal structure; HIV

Indexed keywords

ANTIBODY; ANTIBODY Q425; BARIUM ION; CALCIUM ION; CD4 ANTIGEN; COORDINATION COMPOUND; EDETIC ACID; GLYCOPROTEIN GP 120; METAL; METALLOPROTEIN; UNCLASSIFIED DRUG;

ANTIGEN RECOGNITION; ARTICLE; BINDING AFFINITY; BINDING SITE; CALCIUM BINDING; CRYSTAL STRUCTURE; ENERGY TRANSFER; LIGAND BINDING; MOLECULAR RECOGNITION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FAMILY; SURFACE PLASMON RESONANCE; VIRUS CELL INTERACTION; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; ANTIBODIES; ANTIBODY SPECIFICITY; ANTIGENS, CD4; BASE SEQUENCE; BIOPHYSICS; CALCIUM; CRYSTALLOGRAPHY, X-RAY; DNA PRIMERS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; SURFACE PLASMON RESONANCE;

HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 26844529196     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0507267102     Document Type: Article

References (36)

1. Schultz, P. G., Yin, J. & Lerner, R. A. (2002) Angew. Chem. Int. Ed. 41, 4427-4437.
2. Tonegawa, S. (1983) Nature 302, 575-581.
3. Wabl, M. & Steinberg, C. (1996) Curr. Opin. Immunol. 8, 89-92.
4. Calaresc, D. A., Scanlan, C. N., Zwick, M. B., Deechongkit, S., Mimura, Y., Kunert, R., Zhu, P., Wormald, M. R., Stanfield, R. L., Roux, K. H., et al. (2003) Science 300, 2065-2071.
5. Choe, H., Li, W., Wright, P. L., Vasilieva, N., Venturi, M., Huang, C., Grundner, C., Zwick, M. B., Wang, L., Rosenberg, E. S., Kwong, P. D., et al. (2003) Cell 114, 161-170.
6. Huang, C., Venturi, M., Majeed, S., Moore, M. J., Phogat, S., Zhang, M. Y., Dimitrov, D. S., Hendrickson, W. A., Robinson, J., Sodroski, J., et al. (2004) Proc. Natl. Acad. Sci. USA 101, 2706-2711.
7. Ofek, G., Tang, M., Sambor, A., Katinger, H., Mascola, J., Wyatt, R. & Kwong, P. D. (2004) J. Virol 78, 10724-10737.
8. Cardoso, R. M., Zwick, M. B., Stanfield, R. L., Kunert, R., Binley, J. M., Katinger, H., Burton, D. R. & Wilson, I. A. (2005) Immunity 22, 163-173.
9. Holm, R. H., Kennepohl, P. & Solomon, E. I. (1996) Chem. Rev. 96, 2239-2314.
10. Barondeau, D. P. & Getzoff, E. D. (2004) Curr. Opin. Struct. Biol. 14, 765-774.
11. Iverson, B. I., Iverson, S. A., Roberts, V. A., Getzoff, E. D., Tainer, J. A., Benkovic, S. J. & Lerner, R. A. (1990) Science 249, 659-662.
12. Brummer, O., Hoffman, T. Z. & Janda, K. D. (2001) Bioorg. Med. Chem. 9, 2253-2258.
13. Iverson, B. I. & Lerner, R. A. (1989) Science 243, 1184-1188.
14. Nicolas, K. M., Wentworth, P. J., Harwig, C. W., Wentworth, A. D., Shafton, A. & Janda, K. D. (2002) Proc. Natl. Acad. Sci. USA 99, 2648-2653.
15. Nimri, S. & Keiman, E. (1999) J. Am. Chem. Soc. 121, 8978-8982.
16. Lerner, R. A., Benkovic, S. J. & Schultz, P. G. (1991) Science 252, 659-667.
17. Healy, D., Dianda, L., Moore, J. P., McDougal, J. S., Moore, M. J., Estess, P., Buck, D., Kwong, P. D., Beverly, P. C. L. & Sattentau, Q. J. (1990) J. Exp. Med. 172, 1233-1242.
18. Wu, H., Kwong, P. D. & Hendrickson, W. A. (1997) Nature 387, 527-530.
19. Kwong, P. D., Wyatt, R., Desjardins, E., Robinson, J., Culp, J. S., Hellmig, B. D., Sweet, R. W., Sodroski, J. & Hendrickson, W. A. (1999) J. Biol. Chem. 274, 4115-4123.
20. Kwong, P. D., Doyle, M. L., Casper, D. J., Cicala, C., Leavitt, S. A., Majeed, S., Steenbeke, T. D., Venturi, M., Chaikin, I., Fung, M., et al. (2002) Nature 420, 678-682.
21. LeFranc, M. P. (2003) Nucleic Acids Res. 31, 307-310.
22. Otwinowski, Z. & Minor, W. (1997) Methods Enzymol. 276, 307-326.
23. Collaborative Computational Project, No. 4 (1994) Acta Crystallogr. 50, 760-763.
24. Navaza, J. (1994) Acta Crystallogr. A 50, 157-163.
25. Eigenbrot, C., Presta, L., Randal, M. & Kossiakoff, A. A. (1993) J. Mol. Biol. 229, 969-995.
26. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165.
27. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., et al. (1998) Acta Crystallogr. D 54, 905-921.
28. Merritt, E. A. & Bacon, D. J. (1997) Methods Enzymol. 277, 505-524.
29. Landry, R. C., Klimovicz, A. C., Lavictoire, S. J., Borisova, S., Kottachchi, D. T., Lorimer, I. A. & Evans, S. V. (2001) J. Mol. Biol. 308, 883-893.
30. Wei, X., Decker, J. M., Wang, S., Hui, H., Kappes, J. C., Wu, X., Salazar-Gonzalez, J. F., Salazar, G. M., Kilby, M. J., Saag, M. S., et al. (2003) Nature 422, 307-312.
31. Barbas, C. F., III, Rosenblum, J. S. & Lerner, R. A. (1993) Proc. Natl. Acad. Sci. USA 90, 6385-6389.
32. Roberts, V. A., Iverson, B. I., Iverson, S. A., Benkovic, S. J., Lerner, R. A., Getzoff, E. D. & Tainer, J. A. (1990) Proc. Natl. Acad. Sci. USA 87, 6654-6658.
33. Chothia, C. & Lesk, A. M. (1987) J. Mol. Biol. 196, 901-917.
34. Glucker, J. F., Katz, A. K. & Bock, C. W. (1999) Rigaku J. 16, 8-16.
35. Rulisek, L. & Vondrasek, J. (1998) J. Inorg. Biochem. 71, 115-127.
36. Lovell, S. C., Davis, I. W., Arendall, W. B., de Bakker, P. I. W., Word, J. M., Prisant, M. G., Richardson, J. S. & Richardson, D. C. (2003) Proteins Struct. Funct. Genet. 50, 437-450.