Reading the patterns in living cells —the physics of ca2+ signaling

Advances in Physics

Volumn 53, Issue 3, 2004, Pages 255-440

  Falcke, Martin ^a  

^a HAHN MEITNER INSTITUT   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; DIFFUSION; MATHEMATICAL MODELS; OSCILLATIONS; PARAMETER ESTIMATION; RANDOM PROCESSES;

CELL MODELS; HANDLING DYNAMICS; INTRACELLULAR CONCENTRATION; MEMBRANE DYNAMICS;

SIGNALING;

EID: 3142773575     PISSN: 00018732     EISSN: 14606976     Source Type: Journal    
DOI: 10.1080/00018730410001703159     Document Type: Article

References (580)

1. Berridge, MJ, Bootman, MD, and Lipp, P. 1998. Calcium — a life and death signal. Nature, 395:645–648.
2. Berridge, MJ. 1990a. Calcium oscillations. J. Biol. Chem., 265 (17):9583–9586.
3. Jaffe, LF. 1993. Classes and mechanisms of calcium waves. Cell Calcium, 14:736–745.
4. Cheng, H, Lederer, WJ, and Cannel, MB. 1993. Calcium-sparks:elementary events underlying excitation-contraction coupling in heart muscle. Science, 262:740–744.
5. Gilkey, JC, Jaffe, LF, Ridgway, EB, and Reynolds, GT. 1978. A free caclium wave traverses the activating egg of the medaka, Oryzias laptipes. J. Cell Biol., 46 (2):448–466.
6. 2+ oscillations:Regulatory mechanisms and theoretical models chapter 8 pages 129–151 Volume 623 of Falcke and Malchow [100]
7. Lechleiter, JD, Girard, S, Peralta, E, and Clapham, D. 1991a. Spiral calcium wave propagation and annihilation in Xenopus laevis oocytes. Science, 252:123–126.
8. 2+ atpases. J. Biophys. Chem., 72:123–129.
9. 3. Dev. Biol., 128:200–212.
10. 2+ wave in Xenopus laevis eggs. Biophys. J., 75:2088–2097.
11. 2+ signalling events in Xenopus oocytes. J. Physiol., 509 (1):67–80.
12. 2+ signals are not stereotypic, but reflect activation of different size channle clusters and variable recruitment of channels within a cluster. J. Biol. Chem., 273 (42):27130–27136.
13. Mak, DD, McBride, S, Raghuram, V, Yue, Y, Joseph, SK, and Foskett, JK. 2000. Single-channel properties in endoplasmic reticulum membrane of recombinant type 3 inositol trisphosphate receptor. J. Gen. Physiol., 115:241–255.
14. 3 receptor Am. J. Physiol. 275 (Cell. Physiol. 44) C179 C188
15. 2+-binding sites along the permeation pathway. Biophys. J., 71:1714–1722.
16. 2+ signals in Xenopus oocytes. J. Physiol., 509 (1):81–91.
17. 2+ oscillations. EMBO J., 20 (1 & 2):65–76.
18. 3. EMBO J., 19 (14):3608–3617.
19. 2+ release sites in non-excitable cells. Curr. Biol., 10:8–15.
20. Bootman, M, Berridge, M, and Lipp, P. 1997c. Cooking with calcium:The recipes for composing global signals from elementary events. Cell, 91:367–373.
21. 2+ channels. Biochim. Biophys. Acta, 1436:19–33.
22. Patel, S, Joseph, SK, and Thomas, AP. 1999. Molecular properties of inositol 1,4,5-trisphosphate receptors. Cell Calcium, 25 (3):247–264.
23. Putney, JW, and Bird, GSJ. 1993c. The inositolphosphate-calcium signaling system in nonexcitable cells. Endocrine Rev., 14 (5):610–631.
24. Tsien, RW, and Tsien, RY. 1990. Calcium channels, stores and oscillations. Annu. Rev. Cell Biol., 6:715–760.
25. Berridge, MJ. 1983. Rapid accumulation of inositol trisphosphate reveals that agonists hydrolyse polyphosphoinositides instead of phosphatidylinositol. Biochem. J., 212:849–858.
26. 2+ from a nonmitochondrial store in pancreatic cells by inositol 1,4,5-trisphosphate. Nature, 306:67–68.
27. 3-activated elementary calcium signals and are downregulated by prolonged hormonal stimulation to inhibit cellular calcium responses. J. Cell Sci., 114 (22):3979–3989.
28. Berridge, M. 1997. Elementary and global aspects of calcium signalling. J. Physiol., 499:291–306.
29. Rizzuto, R, Bernardi, P, and Pozzan, T. 2000. Mitochondria as all-round players of the calcium game. J. Physiol., 529 (1):37–47.
30. 2+ homeostasis. J. Neurochem., 66:403–411.
31. 2+ in cell physiology and pathophysiology. Cell Calcium, 28 (5/6):339–348.
32. Haak, LL, Grimaldi, M, and Russel, JT. 2000. Mitochondria in myelinating cells:calcium signaling in oligodendrocyte precursor cells. Cell Calcium, 28 (5/6):297–306.
33. Friel, DD. 2000c. Mitochondria as regulators of stimulus-evoked calcium signals in neurons. Cell Calcium, 28 (5/6):307–316.
34. Jouaville, LS, Ichas, F, Holmuhamedov, EL, Camacho, P, and Lechleiter, JD. 1995. Synchronisation of calcium waves of mitochondrial substrates in Xenopus laevis oocytes. Nature, 377:438–441.
35. 2+ cycling on pattern formation and stability. Biophys. J., 77:37–44.
36. Gurney, AM, Drummond, RM, and Fay, FS. 2000. Calcium signalling in sarcoplasmic reticulum, cytoplasm and mitochondria during activation of rabbit aorta myocytes. Cell Calcium, 27 (6):339–351.
37. 2+ removal in smooth muscle cells. Pflügers Arch., 431 (4):473–482.
38. Ichas, F, Jouaville, LS, Sidah, SS, Mazat, J-P, and Holmuhamedov, EL. 1994. Mitochondrial calcium spiking:A transduction mechanism based on calcium-induced permeability transition involved in cell calcium signalling. FEBS Lett., 348:211
39. Marhl, M, St. Schuster and Brumen, M. 1998. Mitochondria as an important factor in the maintenance of constant amplitudes of cytosolic calcium oscillations. Biophys. Chem., 71:125–132.
40. c elevations in sympathetic neurons. J. Gen. Physiol., 112:351–369.
41. 2+ uptake and release pathways in sympathetic neurons. J. Gen. Physiol., 112:371–388.
42. Atri, A, Amundson, J, Clapham, D, and Sneyd, J. 1993. A single pool model for intracellular calcium oscillations and waves in the Xenopus laevis oocyte. Biophys. J., 65:1727–1739.
43. Sneyd, J, Keizer, J, and Sanderson, MJ. 1995a. Mechanisms of calcium oscillations and waves:a quantitative analysis. FASEB J., 9:1463–1472.
44. Sneyd, J, Dale, PD, and Duffy, A. 1998. Traveling waves in buffered systems:Applications to calcium waves. SIAM J. Appl. Math., 58:1178–1192.
45. 2+ release. Cell Calcium, 14:311–322.
46. 2+ release. Biophys. J., 67:2191–2204.
47. 2+ wave initiation in Xenopus oocytes. Am. J. Physiol., 275:C317–C322.
48. 2+ dynamics. Physica D, 129 (3):236–252.
49. 2+ diffusion. Biophys. J., 67:447–456.
50. Keizer, J, and Smith, GD. 1998. Spark-to-wave transition:saltatory transmission of calcium waves in cardiac myocytes. Biophys. Chem., 72:87–100.
51. 2+ release. Phys. Rev. E, 62:2636–2643.
52. 2+ dynamics. Biophys. J., 84 (1):42–56.
53. 2+ dynamics. Biophys. J., 84 (1):28–41.
54. Shuai, JW, and Jung, P. 2002. Optimal intracellular calcium signalling. Phys. Rev. Lett., 88 (6):068102–1–4
55. Stern, MD. 1992. Buffering of calcium in the vicinity of a channel pore. Cell Calcium, 13:183–192.
56. Smith, GD, Dai, L, Miura, RM, and Sherman, A. 2001. Asymptotic analysis of buffered calcium diffusion near a point source. SIAM J. Appl. Math., 61 (5):1816–1838.
57. 2+ waves. Biophys. J., 69:2139–2153.
58. 2+ channel. Biophys. J., 71:3064–3072.
59. Smith, GD, Wagner, J, and Keizer, J. 1996. Validity of the rapid buffer approximation near a point source of calcium ions. Biophys. J., 70:2527–2539.
60. 2+ microdomains on neurotransmitter release. Biophys. J., 76:735–750.
61. Pape, PC, Jong, DS, and Chandler, WK. 1995. Calcium release and its voltage dependence in frog cut muscle fibers equilibrated with 20 mM EGTA. J. Gen. Physiol., 106:259–336.
62. 2+] at the mouth of a calcium channel. J. Neurosci., 17:6961–6973.
63. 2+ signals. Cell Calcium, 24 (5–6):345–357.
64. 2+ sparks of frog skeletal muscle. J. Gen. Physiol., 114:31–48.
65. Gonzalez, A, Kirsch, WG, Shirokova, N, Pizarro, G, Pessah, IH, Stern, MD, Cheng, H, and Rios, E. 2000. Involvement of multiple intracellular release channels in calcium sparks of skeletal muscle. Proc. Nat. Acad. Sci. USA, 97 (8):4380–4385.
66. 3 receptor channel clusters and concentration profiles. Biophys. J, 86:2660–2673.
67. Melzer, W, Rios, E, and Schneider, MF. 1984. Time course of calcium release and removal in skeletal muscle fibers. Biophys. J., 45:637–641.
68. Melzer, W, Rios, E, and Schneider, MF. 1987. A general procedure for determining the rate of calcium release from the sarcoplasmic reticulum in skeletal muscle fibers. Biophys. J., 51:849–863.
69. 2+ sparks in cardiac muscle. Proc. Nat. Acad. Sci. USA, 94:4176–4181.
70. Smith, GD, Keizer, J, Stern, MD, Lederer, WJ, and Cheng, H. 1998a. A simple numerical model of clacium spark formation and detection in cardiac myocytes. Biophys. J., 75:15–32.
71. 2+ sparks. Biophys. J., 80:88–102.
72. Pratusevitch, VR, and Balke, CW. 1996. Factors shaping the confocal image of calcium spark in cardiac muscle cells. Biophys. J., 71:2942–2957.
73. Soeller, C, and Cannell, MB. 1997. Numerical simulation of local calcium movements during L-type calcium channel gating in the cardiac diad. Biophys. J., 73:97–111.
74. 2+ depletion in the tranverse tubular system of mammalian muscle. Biophys. J., 80:2046–2055.
75. 2+ signal for phasic transmitter release at the rat calyx of Held. J. Physiol., 547 (3):665–689.
76. Allbritton, NL, Meyer, T, and Sryer, L. 1992. Range of messenger action of calcium ion and inositol 1,4,5-trisphosphate. Science, 258:1812–1815.
77. Milner, RE, Famulski, KS, and Michalak, M. 1992. Calcium binding proteins in the sarco/endoplasmatic reticulum of muscle and nonmuscle cells. Mol. Cell. Biochem., 112:1–13.
78. Zhou, Z, and Neher, E. 1993. Mobile and immobile calcium buffers in bovine adrenal chromaffin cells. J. Physiol., 469:245–273.
79. 2+ release as irreversible markov process. Biophys. J., 83:2511–2521.
80. Strier, DE, Ventura, AC, and Ponce-Dawson, S. 2003. Saltatory and continuous calcium waves and the rapid buffer approximation. Biophys. J., 85 (6):3575–3586.
81. Tsugorka, A, Rios, E, and Blatter, LA. 1995. Imaging elementary events of calcium release in skeletal muscle cells. Science, 269:1723–1726.
82. Cheng, H, Lederer, WJ, and Channel, MB. 1993a. Calcium sparks and [Ca] waves in cardiac myocytes. Am. J. Physiol., 270:C148–C159.
83. Lopez-Lopez, JR, Shacklock, PS, Balke, CW, and Wier, WG. 1995. Local calcium transients triggered by single l-type calcium channel currents in cardiac cells. Science, 268:1042–1045.
84. 2+ transients. Cell Calcium, 23 (5):291–302.
85. Mejia-Alvarez, R, Kettlun, C, Rios, E, and Stern, MD. 1999. Unitary calcium current through cardiac ryanodine receptors under physiological conditions. J. Gen. Physiol., 113:177–186.
86. Keener JP, Sneyd J, 1998 Mathematical Physiology, Springer New York
87. 3-gated channels from cerebellum:conduction properties for divalent cations and regulation by intraluminal calcium. J. Gen. Physiol., 104:821–856.
88. Marchant, JS, and Taylor, CW. 1998. Rapid activation and partial inactivation of inositol trisphosphate receptors by inositol trisphosphate. Biochemistry, 37:11524–11533.
89. Dufour, JF, Arias, IM, and Turner, TJ. 1997. Inositol 1,4,5-trisphosphate and calcium regulate the calcium channel function of the hepatic Inositol 1,4,5-trisphosphate receptor. J. Biol. Chem., 272 (5):2675–2681.
90. Berridge, MJ, Lipp, P, and Bootman, MD. 2000. The versatility and universatility of calcium signalling. Nature Rev. Mol. Cell Biol., 1:11–22.
91. 2+, chapter 1, pages 1 16 Volume 623 of Falcke and Malchow [100]
92. 2+. Cell Calcium, 32 (5–6):321–334.
93. Mikoshiba, K. 1993. Inositol 1,4,5-trisphosphate receptor. Trends Pharm. Sci., 14 (3):86–89.
94. Michikawa, T, Hamanaka, H, Otsu, H, Yamamoto, A, Miyawaki, A, Furuichi, T, Tashiro, Y, and Mikoshiba, K. 1994. Transmembrane topology and sites of n-glycosylation of Inositol 1,4,5-trisphosphate receptor. J. Biol. Chem., 269:9184–9189.
95. Furuichi, T, Kohda, K, Miyawaki, A, and Mikoshiba, K. 1994a. Intracellular channels. Curr. Opin. Neurobiol., 4:294–303.
96. Monkawa, T, Miyawaki, A, Sugiyama, T, Yoneshima, H, Yamamoto-Hino, M, Furuichi, T, Saruta, T, Hasegawa, M, and Mikoshiba, K. 1995. Heterotetrameric complex formation of inositol 1,4,5-trisphosphate receptor subunits. J. Biol. Chem., 270:14700–14704.
97. Joseph, SK, Bokkala, S, Boehning, D, and Zeigler, S. 2000a. Factors determining the composition of inositol trisphosphate receptor hetero-oligomers expressed in COS cells. J. Biol. Chem., 275 (21):16084–16090.
98. Galvan, DL, Borrego-Diaz, E, Perez, PJ, and Mignery, GA. 1999. Subunit oligomerization and toplogy of the inositol 1,4,5-trisphosphate receptor. J. Biol. Chem., 274 (41):29483–29492.
99. Onoue, H, Tanaka, H, Tanaka, K, Doira, N, and Ito, Y. 2000. Heterooligomer of type 1 and type 2 Inositol 1,4,5-trisphosphate receptor expressed in rat liver membrane fractions exists as terameric complexes. Biochem. Biophys. Research Commun., 267:928–933.
100. Falcke M, Malchow D, (eds) 2003 Understanding Calcium Dynamics —Experiments and Theory volume 623 of Lecture Notes in Physics, Springer Berlin Heidelberg New York
101. DeSmedt, H, Missiaen, L, Parys, JB, Bootman, MD, Mertens, I, L, Van den Bosh, L, and Casteels, R. 1994. Determination of relative amounts of inositol trisphosphate receptor mRNA isoforms by ratiopolymerase chain reaction. J. Biol. Chem., 269:21691–21698.
102. 3. J. Biol. Chem., 269:28613–28619.
103. Fujino, I, Yamada, N, Miyawaki, A, Hasegawa, M, Furuichi, T, and Mikoshiba, K. 1995a. Differential expression of type 2 and type 3 inositol 1,4,5-trisphosphate receptor mRNAs in various mouse tissues:in situ hybridization study. Cell Tissue Res., 280:201–210.
104. Joseph, SK. 1995. The inositol trisphosphate receptor family. Cell Signalling, 8:1–7.
105. Nucifora, FC, Jr., Sharp, AH, Milgram, SL, and Ross, CA. 1996. Inositol 1,4,5-trisphosphate receptors in endocrine cells:localization and association in hetero- and homotetramers. Mol. Biol. Cell, 7:949–960.
106. Parys, JB, and Bezprozvanny, I. 1995. The inositol trisphosphate receptor of Xenopus oocytes. Cell Calcium, 18 (5):353–363.
107. 3 receptor channel stays open in the presence of increased calcium. Nature, 396:81–84.
108. Wojcikiewicz, JHR. 1995. Type I, II and III inositol 1,4,5-trisphosphate receptors are unequally susceptible to down-regulation and are expressed in markedly different proportions in different cell types. J. Biol. Chem., 270:11678–11683.
109. 2+ wave trigger zone of panreatic acinar cells. J. Biol. Chem., 269:4693–4696.
110. 2+ signaling in secretory epithelial cells. Cell Calcium, 20:203–214.
111. Yule, DI, Ernst, SA, Ohnishi, H, and Wojcikiewicz, RJ. 1997. Evidence that zymogen granules are not a physiologically relevant pool; the distribution of inositol 1,4,5-trisphosphate receptors in pancreatic acinar cells. J. Biol. Chem., 272:9093–9098.
112. 2+ binding site in the type i inositol 1,4,5-trisphosphate receptor. J. Biol. Chem., 271:27005–27012.
113. 2+-binding domains in the type 1 Inositol 1,4,5-trisphosphate receptor. J. Biol. Chem., 272 (41):25899–25906.
114. 2+ signaling. EMBO J., 20:1674–1680.
115. Mignery, GA, and Südhof, TC. 1990a. The ligand binding site and transduction mechanism in the inositol 1,4,5-trisphosphate receptor. EMBO J., 9:3893–3898.
116. Boehning, D, and Joseph, SK. 2000b. Direct association of ligand-binding and pore domains in homo- and heterotetrameric inositol 1,4,5-trisphosphate receptors. EMBO J., 19:5450–5459.
117. Watras, J, Bezprozvanny, I, and Ehrlich, BE. 1991. Inositol 1,4,5-trisphosphate-gated channels in cerebellum:presence of multiple conductance states. J. Neurosci., 11:3239–3245.
118. 3) receptor in Xenopus oocyte nucleus. J. Gen. Physiol., 109:571–587.
119. Ramos-Franco, J, Bare, D, Caenepeel, S, Nani, A, Fill, M, and Mignery, GA. 2000. Single channel function of recombinant type 2 inositol 1,4,5-trisphosphate receptor. Biophsy. J., 79:1388–1399.
120. Ramos-Franco, J, Fill, M, and Mignery, GA. 1998. Isoform-specific function of single inositol 1,4,5-trisphosphate receptor channels. Biophys. J., 75:834–839.
121. Hagar, RE, and Ehrlich, BE. 2000. Regulation of the type III Insp3 receptor by Insp3 and ATP. Biophys. J., 79 (1):271–278.
122. 3 and calcium. J. Gen. Physiol., 113:837–849.
123. 3 receptors. J. Gen. Physiol., 117:435–446.
124. Finch, EA, Turner, TJ, and Goldin, SM. 1991. Calcium as coagonist of Inositol 1,4,5-trisphosphate-induced calcium release. Science, 252:443–446.
125. 3- and calcium-gated channels from endoplasmatic reticulum of cerebellum. Nature, 351:751–754.
126. 2+ liberation in Xenopus oocytes:hot spots, puffs and blips. Cell Calcium, 20 (2):105–121.
127. 3 receptor. EMBO J., 16 (12):3533–3543.
128. Boehning, D, and Joseph, SK. 2000. Functional properties of recombinant type I and type III Inositol 1,4,5-trisphosphate receptor isoforms expressed in COS-7 cells. J. Biol. Chem., 275 (28):21492–21499.
129. 3r single-channle gating. J. Gen. Physiol., 122:583–603.
130. 2+ inhibition. Proc. Nat. Acad. Sci. USA, 95:15821–15825.
131. 3 receptor subtypes. EMBO J., 18 (5):1303–1308.
132. 3 receptor in 16HBE140-bronchial mucosal cells. J. Biol. Chem., 273 (15):8983–8986.
133. Ramos-Franco, J, Caenepeel, S, Fill, M, and Mignery, GA. 1998a. Single channel function of recombinant type-1 inositol 1,4,5-trisphosphate receptor ligand binding domain splice variants. Biophys. J., 75:2783–2793.
134. Michikawa, T, Hirota, J, Kawano, S, Hiraoka, M, and Mikoshiba, K. 1999. Calmodulin mediates calcium-dependent inactivation of the cerebellar type 1 Inositol 1,4,5-trisphosphate receptor. Neuron, 23:799–808.
135. 2+ activation. J. Gen. Physiol., 117:447–456.
136. Meyer, T, Holowka, D, and Stryer, L. 1988. Highly cooperative opening of Calcium channels by Inositol 1,4,5-trisphosphate. Science, 240:653–656.
137. Oancea, E, and Meyer, T. 1996. Reversible desensitization of Inositol 1,4,5-trisphosphate-induced calcium release provides a mechanism for repetitive calcium spikes. J. Biol. Chem., 271:17253–17260.
138. Meyer, T, Wensel, T, and Stryer, L. 1990a. Kinetics of calcium channel opening by Inositol 1,4,5-trisphosphate. Biochemistry, 29:32–37.
139. Parker, I, Yao, Y, and Ilyin, V. 1996a. Fast kinetics of calcium liberation induced in Xenopus oocytes by photoreleased inositol trisphosphate. Biophys. J., 70:222–237.
140. 2+ safeguards against spontaneous activity. Curr. Biol., 7:510–518.
141. Swatton, JE, and Taylor, CW. 2002. Fast biphasic regulation of type 3 inositol trisphosphate receptors by cytosolic calcium. J. Biol. Chem., 277:17571–17579.
142. 3 in single guinea pig hepatocytes and rat purkinje neurons. J. Gen. Physiol., 109:741–756.
143. Hannaert-Merah, Z, Coquil, J-F, Combettes, L, Claret, M, Mauger, J-P, and Champeil, P. 1994a. Rapid kinetics of myo-Inositol trisphosphate binding and dissociation in cerebellar microsomes. J. Biol. Chem., 269 (47):29642–29649.
144. Natsume, T, Hirota, J, Yoshikawa, F, Furuichi, T, and Mikoshiba, K. 1999b. Real time analysis of interaction between inositol 1,4,5-trisphosphate receptor type I and its ligand. Biochem. Biophys. Res. Commun., 260:527–533.
145. Hajnóczky, G, and Thomas, AP. 1994. The inositol trisphosphate channel is inactivated by inositol trisphosphate. EMBO J., 370:474–477.
146. 2+]. J. Cell Biol., 132 (4):607–616.
147. Ferris, CD, Cameron, AM, Huganir, RL, and Snyder, SH. 1992. Quantal calcium release by purified reconstituted inositol 1,4,5-trisphosphate receptors. Nature, 356:350–352.
148. Meyer, T, and Stryer, L. 1990. Transient calcium release induced by succesive increments of inositol 1,4,5-trisphosphate. Proc. Nat. Acad. Sci. USA, 87:3841–3845.
149. 2+ stores. J. Biol. Chem., 269:24783–24791.
150. Parys, JB, Missiaen, L, De Smedt, H, Sienaert, I, Henning, RH, and Casteels, R. 1995. Quantal release of calcium in permeabilized a7r5 ceils is not caused by intrinsic inactivation of the inositol trisphosphate receptor. Biochem. Biophys. Res. Commun., 209:451–456.
151. Worley, PF, Barabant, JM, Supattapone, S, Wilson, VS, and Snyder, SH. 1987. Characterization of inositol trisphosphate receptor binding in brain. J. Biol. Chem., 262 (5):12132–12136.
152. Worley, PF, Barabant, JM, Colvin, JM, and Snyder, SH. 1987a. Inositol trisphosphate receptor localization in brain:variable stoichiometry wiht protein kinase C. Nature, 325:159–161.
153. Supattapone, S, Worley, PF, Barabant, JM, and Snyder, SH. 1988. Solubilization, purification, and characterization of an inositol trisphosphate receptor. J. Biol. Chem., 263 (3):1530–1534.
154. Joseph, SK, Rice, HL, and Williamson, JR. 1989. The effect of external calcium and pH on inositol trisphosphate-mediated calcium release from cerebellum microsomla fractions. Biochem. J., 258:261–265.
155. 2+. Biochem. J., 328:785–793.
156. 2+ differentially regulates the ligand-affinity states of type 1 and type 3 inositol 1,4,5-trisphosphate receptors. Biochem. J., 322:591–596.
157. 2+ and calmodulin. J. Biol. Chem., 274 (17):12157–12162.
158. 2+. Cell Calcium, 15:66–78.
159. 3 receptor isoforms. Biochem. J., 346:275–280.
160. 2+-mobilization. J. Biol. Chem., 268:11528–11533.
161. Marshall, ICB, and Taylor, CW. 1994. Two calcium-binding sites mediate the interconversion of liver inositol 1,4,5-trisphosphate receptore between three conformational states. Biochem. J., 301:591–598.
162. Picard, L, Coquil, J-F, and Mauger, J-P. 1998. Multiple mechanisms of regulation of the inositol 1,4,5-trisphosphate receptor by calcium. Cell Calcium, 23 (5):339–348.
163. Mohr, FC, Hershey, PEC, Zimaányi, I, and Pessah, IN. 1993. Regulation of inositol 1,4,5-trisphosphate receptors in rat basophilic leukemia cells. I. Multiple conformational states of the receptor in a microsomal preparation. Biochim. Biophys. Acta, 1147:105–114.
164. 2+ mobilization in hepatocytes. J. Biol. Chem., 268:13214–13220.
165. 2+ release in smooth muscle cells of the guinea pig taenia caeci. J. Gen. Physiol., 95:1103–1122.
166. 2+. Curr. Biol., 9:1115–1118.
167. 2+ release. Proc. Nat. Acad. Sci. USA, 87:260–264.
168. 2+ release in Xenopus oocytes. J. Physiol., 477 (3):503–509.
169. 2+ in guinea-pig isolated hepatocytes. J. Physiol.(Lond.), 422 (1):585–602.
170. 2+ release from cerebellar microsomes. J. Biol. Chem., 269:17561–17571.
171. Mak, DD, McBride, SMJ, Petrenko, NB, and Foskett, JK. 2003. Novel regulation of calcium inhibition of the inositol 1,4,5-trisphosphate receptor calcium-release channel. J. Gen. Physiol., 122:569–581.
172. Yamada, M, Miyawaki, A, Saito, K, Yamamoto-Hino, M, Ryo, Y, Furuichi, T, and Mikoshiba, K. 1995b. The calmodulin binding domain in the mouse type 1 inositol 1,4,5-trisphosphate receptor. Biochem. J., 308:83–88.
173. Hirota, J, Michikawa, T, Natsume, T, Furuichi, T, and Mikoshiba, K. 1999. Calmodulin inhibits inositol 1,4,5-trisphosphate-induced calcium release through the purified and reconstituted inositol 1,4,5-trisphosphate receptor type 1. FEBS Lett., 456:322–326.
174. 2+/calmodulin. J. Biol. Chem., 274 (20):13748–13751.
175. 2+ inhibition in human bronchial mucosal cells. Mol. Pharmacol., 57:564–567.
176. 2+ release mediated by type-1, -2 and -3 inositol trisphosphate receptors. Biochem. J., 345 (2):357–363.
177. 2+ mobilization. Proc. Nat. Acad. Sci. USA, 94:11627–11623.
178. 2+-independent inhibition of type 1 inositol trisphosphate receptors. Biochem. J., 334:447–455.
179. 2+ regulation of inositol trisphosphate receptors. Biochem. J., 360:395–400.
180. Ferris, CD, Huganir, RL, and Snyder, SH. 1990. Calcium flux mediated by purified inositol 1,4,5-trisphosphate receptors reconstituted in lipid vesicles is allosterically regulated by adenine nucleotides. Proc. Nat. Acad. Sci. USA, 87:2147–2151.
181. Maeda, N, Kawasaki, T, Nakade, S, Yokota, N, Taguchi, T, Kasai, M, and Mikoshiba, K. 1991. Structural and functional characterization of inositol 1,4,5-trisphosphate receptor channel from mouse cerebellum. J. Biol. Chem., 266:1109–1116.
182. 2+ release in vascular smooth muscle cells. J. Gen. Physiol., 98:681–689.
183. 2+ activation. J. Biol. Chem., 274 (32):22231–22237.
184. Maes, K, Missiaen, L, DeSmet, P, Vanlingen, S, Callewaert, G, Parys, JB, and DeSmedt. 2000. Differential modulation of inositol 1,4,5-trisphosphate receptor type 1 and type 3 by atp. Cell Calcium, 27 (5):257–267.
185. Bezprozvanny, I, and Ehrlich, BE. 1991. ATP modulates the function of inositol(1,4,5)-trisphosphate-gated channels at two different sites. Neuron, 10:1175–1184.
186. 3r1:structure, function, regulation of expression and chromosomal localization. Biochem. J., 302:781–790.
187. Yamamoto-Hino, M, Sugiyama, T, Hikichi, K, Mattei, M-G, Hasegawa, K, Sekine, S, Sakurada, K, Miyawaki, A, Furuichi, T, Hasegawa, M, and Mikoshiba, K. 1994. Cloning and characterization of human type 2 and type 3 inositol 1,4,5-trisphosphate receptors. Recept. Chan., 2:9–22.
188. Maranto, AR. 1994. Primary structure, ligand binding, and localization of the human type 3 inositol 1,4,5-trisphosphate receptor expressed in intestinal epithelium. J. Biol. Chem., 269:1222–1230.
189. Mignery, GA, Newton, CL, Archer, BTI, and Südhof, TC. 1990. Structure and expression of the rat inositol 1,4,5-trisphosphate receptor. J. Biol. Chem., 265:12679–12685.
190. 2+-mobilizing receptors. Biochem. J., 270:227–232.
191. Robb-Gaspers, LD, Burnett, P, Rutter, GA, Denton, RM, Rizzuto, R, and Thomas, AP. 1998. Integrating cytosolic calcium signals into mitochondrial metabolic responses. EMBO J., 17 (17):4987–5000.
192. LeBeau, A, Yule, DI, Groblewski, GE, and Sneyd, J. 1999. Agonist-dependent phosphorylation of the inositol 1,4,5-trisphosphate receptor — a possible mechanism for agonist-specific calcium oscillations in pancreatic acinar cells. J. Gen. Physiol., 113:851–871.
193. Yule, DI, Lawrie, AM, and Gallacher, DV. 1991. Acetylcholine and cholecystokini induce different patterns of oscillating calcium signals in pancreatic acinar cells. Cell Calcium, 12:145–151.
194. Yule, DI, Williams, JA, and Logsdon, CD. 1993. A cloned cck-a recptor transduces multiple signals in response to full and partial agonists. Am. J. Physiol., 265:G999–G1004.
195. Burgess, GM, Bird, G, Obie, St. J, and Putney, JW, Jr. 1991. The mechanism for synergism between phospholipase c-linked and adenylylcyclase-linked hormones in liver. J. Biol. Chem., 266:4772–4781.
196. Bird, GS, Burgess, GM, and Putney, JW, Jr. 1993b. Sulfhydryl reagents and cAMP-dependent kinase increase the sensitivity of the inositol 1,4,5-trisphosphate receptor in hepatocytes. J. Biol. Chem., 268:17917–17923.
197. Joseph, SK, and Ryan, SV. 1993a. Phosphorylation of the inositol trisphosphate receptor in isolated rat hepatocytes. J. Biol. Chem., 268 (31):23059–23065.
198. 2+ mobilization in permeabilized hepatocytes. Biochem. J., 293:413–422.
199. Wojcikiewicz, RJH, and Luo, SG. 1998. Phosphorylation of Inositol 1,4,5-Trisphosphate receptors by cAMP-dependent protein kinase. J. Biol. Chem., 10:5670–5677.
200. Supattapone, S, Danoff, SK, Theibert, A, Joseph, SK, Steiner, J, and Snyder, SH. 1988. Cyclic AMP-dependent phosphorylation of brain inositol trisphosphate receptor decreases its release of calcium. Proc. Nat. Acad. Sci. USA, 85:8747–8750.
201. 2+ release. II. Effect of cyclic AMP dependent protein kinase. Am. J. Physiol., 258:C1086–C1091.
202. 2+ flux in reconstituted lipid vesicles. J. Biol. Chem., 269:6735–6742.
203. Ferris, CD, Huganir, RL, Bredt, DS, Cameron, AM, and Snyder, SH. 1991. Inositol trisphosphate receptor:Phosphorylation by protein kinase C and calcium calmodulin-dependent protein kinase in reconstituted lipid vesicles. Proc. Nat. Acad. Sci. USA, 88:2232–2235.
204. Zhang, B-X, Zhao, H, and Muallem, S. 1993. Calcium dependent kinase and phosphatase control inositol-1,4,5-trisphosphate-mediated calcium release:Modification by agonist stimulation. J. Biol. Chem., 268 (5):10997–11001.
205. 2+ flux. Cell, 83:463–472.
206. Komalavillas, P, and Lincoln, TM. 1994. Phosphorylation of the inositol 1,4,5-trisphosphate receptor by cyclic GMP-dependent protein kinase. J. Biol. Chem., 269:8701–8707.
207. Rooney, TA, Joseph, SK, Queen, C, and Thomas, AP. 1996. Cyclic GMP induces oscillatory calcium signals in rat hepatocytes. J. Biol. Chem., 271:19817–19825.
208. Komalavillas, P, and Lincoln, TM. 1996. Phosphorylation of the inositol 1,4,5-trisphosphate receptor. J. Biol. Chem., 271:21933–21938.
209. Cameron, AM, Steiner, JP, Sabatini, DM, Kaplin, AI, Walensky, LD, and Snyder, SH. 1995b. Immunophilin fk506 binding protein associated with inositol 1,4,5-trisphosphate receptor modulates calcium flux. Proc. Nat. Acad. Sci. USA, 92:1784–1788.
210. Benevolensky, D, Moraru, II, and Watras, J. 1994. Micromolar calcium decreases affinity of inositol trisphosphate receptor in vascular smooth muscle. Biochem. J., 299 (3):631–636.
211. Supattapone, S, Worley, PF, Baraban, JM, and Snyder, SH. 1988. Solubilization purification and characterization of an inositol trisphosphate receptor. J. Biol. Chem., 263 (3):1530–1534.
212. 2+ in cells from peripheral tissue. J. Biol. Chem., 265 (25):21419–21422.
213. Missiaen, L, Taylor, CW, and Berridge, MJ. 1991. Spontaneous calcium release from inositol trisphosphate sensitive calcium stores. Nature, 352:241–244.
214. 2+ mobilization by ryanodine receptors is due to all-or-none release from functionally discrete intracellular stores. Biochem. J., 301:879–883.
215. Parys, JB, Missiaen, L, DeSmedt, H, and Casteels, R. 1993. Loading dependence of inositol 1,4,5-trisphosphate-induced calcium release in the clonal cell line a7r5. J. Biol. Chem., 268:25206–25212.
216. 2+ regulates the inositol trisphosphate receptor of rat basophilic leukemia cells at a cytosoloic site. Biochemistry, 34:12738–12746.
217. Berridge, MJ. 1987. Inositol trisphosphate and diacylglycerol:Two interacting second messengers. Annu. Rev. Biochem., 56:159–93.
218. Berridge, MJ. 1993. Inositol trisphosphate and calcium signalling. Nature, 361:315
219. Bourne, HR, and Stryer, L. 1992. The target sets the tempo. Nature, 358:541–543.
220. 2+ increases in NIH-3T3 cells overexpressing phospholipase C gamma 1. Biochem. J., 281:775–784.
221. Pahl, HL. 1999. Signal transduction from the endoplasmic reticulum to the cell nucleus. Physiol. Rev., 79:683–701.
222. Tatu, U, and Helenius, A. 2001. Interactions between newly synthesized glycoproteins, calnexin and a network of resident chaperones in the endoplasmic reticulum. J. Cell Biol., 136:555–565.
223. 2+ store:a view from the lumen. Trends Biochem. Sci., 23:10–14.
224. Michalak, M, Milner, RE, Burns, K, and Opas, M. 1992. Calreticulin. Biochem. J., 285:681–692.
225. 2+ waves. Cell, 82:756–771.
226. 2+ entry in hela cells. Cell Calcium, 24 (4):253–262.
227. John, LM, Lechleiter, JD, and Camacho, P. 1998. Differential modulation of SERCA2 isoforms by Calreticulin. J. Cell Biol., 142 (4):963–973.
228. 2+. J. Biol. Chem., 272:30873–30879.
229. 2+ oscillations via interaction with SERCA2b. J. Cell Biol., 149 (6):1235–1247.
230. 2+ concentration within the endoplasmic reticulum. Proc. Nat. Acad. Sci. USA, 97 (11):5723–5728.
231. Robert, V, DeGiorgi, F, Massimino, ML, Cantini, M, and Pozzan, T. 1998. Direct monitoring of the calcium concentration in the sarcoplasmic and endoplasmic reticulum of skeletal muscle myotubes. J. Biol. Chem., 273 (46):30372–30378.
232. 2+] in the agonist-sensitive internal calcium store using compartmentalized fluorescent indicators:some considerations. Cell Calcium, 20:235–242.
233. 2+ based on green fluorescent proteins and calmodulin. Nature, 388:882–887.
234. 2+ stores in sarcoplasmic and endoplasmic reticulum. Science, 275:1643–1648.
235. Schatzmann, HJ. 1989. The calcium pump of the surface membrane and of the sarcoplasmic reticulum. Annu. Rev. Physiol., 51:473–485.
236. 2+ load of intracellular stores. J. Biol. Chem., 271 (25):14925–14930.
237. 2+-ATPases. J. Biol. Chem., 272 (46):28815–28818.
238. Lytton, J, Westlin, M, Burk, SE, Shull, GE, and MacLennan, DH. 1992. Functional comparisons between isoforms of the sarcoplasmic or endoplasmic reticulum family of calcium pumps. J. Biol. Chem., 267 (20):14483–14489.
239. 2+-ATPase of sarcoplasmic reticulum. J. Biol. Chem., 262:3768–3774.
240. 2+-pump. J. Biol. Chem., 264:18561–18568.
241. Pozzan, T, Rizzuto, R, Volpe, P, and Meldolesi, J. 1994. Molecular and cellular physiology of intracellular calcium stores. Physiol. Rev., 74 (3):595–629.
242. 2+-ATPase. Biophys. J., 82 (2):582–590.
243. Friel DD, 2003 Mitochondrial and ER calcium uptake and release fluxes and their interplay in intact nerve cells chapter 12, pages 37 64 Volume 623 of Falcke and Malchow [100]
244. 2+)ATPase from the intracellular stores of the chicken cerebellum. Biochem. J., 275:555–561.
245. Inesi, G, Kurzmack, M, and Lewis, D. 1988. Kinetic and equilibrium characterization of an energy dependent enzyme and its partial reactions. Methods Enzymol., 157:154–190.
246. Simmermann, HK, and Jones, LR. 1998. Pospholamban:protein structure, mechanism of action, and role in cardiac function. Physiol. Rev., 78:921–947.
247. 2+-atpase molecules of the sarcoplasmic reticulum. J. Biol. Chem., 277:24180–24190.
248. Inesi, G, and DeMeis, L. 1989. Regulation of steady state filling in sarcoplasmic reticulum. J. Biol. Chem., 264 (10):5929–5936.
249. Sneyd, J, Tsaneva-Atanasova, K, Bruce, JIE, Straub, S, Giovannucci, DV, and Yule, DI. 2003. A model of calcium waves in pancreatic and parotid acinar cells. Biophys. J., 85:1392–1405.
250. Gunter, TE, Buntinas, L, Sparagna, G, Eliseev, R, and Gunter, K. 2000. Mitochondrial calcium transport:mechanisms and functions. Cell Calcium, 28 (5/6):285–296.
251. Hajnoczky, G, Robb-Gaspers, LD, Seitz, MB, and Thomas, AP. 1995. Decoding of cytosolic calcium oscillations in the mitochondria. Cell, 82:415–424.
252. Robb-Gaspers, LD, Burnett, P, Ratter, GA, Denton, RM, Rizzuto, R, and Thomas, AP. 1998. Integrating cytosolic calcium signals into mitochondrial metabolic responses. EMBO J., 17 (17):4987–5000.
253. Robb-Gaspers, LD, Rutter, GA, Burnett, P, Hajnóczky, G, Denton, RM, and Thomas, AP. 1998. Coupling between cytosolic and mitochondrial calcium oscillations:role in the regulation of hepatic metabolism. Biochim. Biophys. Acta, 1366:17–32.
254. Jouaville, LS, Pinton, P, Bastianutto, C, Ruttger, GA, and Rizzuto, R. 1999. Regulation of mitochondrial ATP synthesis by calcium:evidence for a long-term metabolic priming. Proc. Nat. Acad. Sci. USA, 96:13807–13812.
255. Gunter, TE, and Pfeiffer, DR. 1990. Mechanism by which mitochondria transport calcium. Am. J. Physiol., 258:C755–C786.
256. 2+ handling. Am. J. Physiol., 273:C717–C733.
257. Magnus, G, and Keizer, J. 1998a. Model of β-cell mitochondrial calcium handling and electrical activity. I. Cytoplasmic variables. Am. J. Physiol., 274:C1158–C1173.
258. Magnus, G, and Keizer, J. 1998b. Model of β-cell mitochondrial calcium handling and electrical activity. II. Mitochondrial variables. Am. J. Physiol., 274:C1173–C1184.
259. 2+ ions, an allosteric activator of calcium uptake in rat liver mitochondria. Arch. Biochem. Biophys., 251 (2):525–535.
260. Kröner, H. 1987. The real kinetics of the mitochondrial calcium uniporter of the liver and its role in cell calcium regulation. Biol. Chem. Hoppe Seyler, 369:149–155.
261. Kröner, H. 1988. Spermine, another specific allosteric activator of calcium uptake in rat liver mitochondria. Arch. Biochem. Biophys., 267:205–210.
262. Wingrove, D, Armatruda, J, and Gunter, T. 1984. Glucagon effects on the membrane potential and calcium uptake rate of rat liver mitochondria. J. Biol. Chem., 259:9390–9394.
263. 2+ by mitochondria. Biochem. Biophys. Res. Commun., 50:846–852.
264. 2+ uniporter by external adenine nucleotides:The uniporter behaves like a gated channel which is regulated by nucleotides and divalent cations. Biochemistry, 36:7071–7080.
265. 2+ carrier in rat liver mitochondria. Biochemistry, 18:5972–5978.
266. Sparagna, GC, Gunter, KK, and Gunter, TE. 1994. A system for producing and monitoring in vitro calcium pulses similar to those observed in vivo. Anal. Biochem., 219:96–103.
267. Sparagna, GC, Gunter, KK, Sheu, S-S, and Gunter, TE. 1995. Mitochondrial clacium uptake from physiological-type pulses of calcium:A description of the rapid uptake mode. J. Biol. Chem., 270:27510–27515.
268. Gallitelli, MF, Schultz, M, Isenberg, G, and Rudolf, F. 1999. Twitch potentiation increases calcium in peripheral more than in central mitochondria of guinea-pig ventricular myocytes. J. Physiol., 518 (2):433–447.
269. Gallitelli, MF, Rudolf, F, Isenberg, G, and Schultz, M. 2000. Mitochondrial calcium concentrations follows beat-to-beat changes in cytosolic calcium of contracting myocytes. Eur. J. Med. Res., 5 (15(L26)
270. Wingrove, D, and Gunter, T. 1986. Kinetics of mitochondrial calcium transport. II. A kinetic description of the sodium-dependent calcium efflux of liver mitochondria and inhibition by ruthenium red and by tetraphenylphosphonium. J. Biol. Chem., 261:15166–15171.
271. Carafoli, E. 1979. The calcium cycle of mitochondria. FEBS Lett., 104:1–15.
272. 2+ efflux in heart and liver mitochondria. Biochem. J., 246:271–277.
273. + exchanger. Am. J. Physiol., 246:c172–c176.
274. Jung, DW, Baysal, K, and Brierley, GP. 1995. The sodium-calcium antiport of heart mitochondria is not electroneutral. J. Biol. Chem., 270:672–678.
275. 2+ uptake by mitochondria. J. Biol. Chem., 254:6288–6295.
276. Gunter, TE, Chace, JH, Puskin, JS, and Gunter, KK. 1983. Mechanism of sodium independent calcium efflux from rat liver mitochondria. Biochemistry, 22:6341–6351.
277. + exchanger. J. Biol. Chem., 266:21640–21648.
278. Wingrove, D, and Gunter, T. 1986. Kinetics of mitochondrial calcium transport. I. Characteristics of the sodium-independent calcium efflux mechanism of liver mitochondria. J. Biol. Chem., 261:15159–15165.
279. 2+-induced membrane transition in mitochondria. I. The protective mechanism. Arch. Biochem. Biophys., 195:453–459.
280. Svichar, N, Shishkin, V, and Kostyuk, P. 1999. Mitochondrial participation in the modulation of calcium transients in drg neurons. NeuroReport, 10:1257–1261.
281. 2+ in perfused liver is independent of the permeability transition pore Am. J.Physiol. 276 (Physiol.45) C1297 C1302
282. 2+ responses in rat oligodendrocyte progenitor. J. Physiol., 508:413–426.
283. Crompton, M. 1999. The mitochondrial permeability transition pore and its role in cell death. Biochem. J., 341:233–249.
284. 2+-stimulated generation of reactive oxygen species by the respiratory chain. Biochemistry, 38:13279–13287.
285. Ichas, F, Jouaville, LS, and Mazat, J-P. 1997. Mitochondria are excitable organelles capable of generating and conveying electrical and calcium signals. Cell, 89:1145
286. 2+ oscillations and spikes generated by mitochondria. Biophys. Chem., 72:111–121.
287. 2+-induced mitochondrial oscillations:A study on permeabilised ehrlich ascites tumour cells. Cell Calcium, 15 (2):143
288. 2+ oscillations inpermeabilized blowfly salivary gland cells:contribution of mitochondria. J. Physiol., 525 (3):707–719.
289. 2+ dynamics. Phys. Rev. Lett., 84 (20):4753–4756.
290. 3-sensitive channels that are sensed by neighboring mitochondria. Science, 262:744–747.
291. Satoh, T, Ross, CA, Villa, A, Supattapone, S, Pozzan, T, Snyder, SH, and Meldolesi, J. 1990. The inositol 1,4,5-trisphosphate receptor in cerebellar Purkinje cells:quantitative immunogold labelling reveals concentration in an er subcompartment. J. Cell Biology, 111:615–624.
292. 2+ waves in cultured oligodendrocytes. J. Biol. Chem., 271:33493–33501.
293. Marhl, M, Haberichter, T, Brumen, M, and Heinrich, R. 2000. Complex calcium oscillations and the role of mitochondria and cytosolic proteins. BioSystems, 75:75–86.
294. Haberichter, T, Marhl, M, and Heinrich, R. 2001. Birhythmicity, trirhythmicity and chaos in bursting calcium oscillations. Biophys. Chem., 90:17–30.
295. c):a critical evaluation. J. Biol. Chem., 270:9896–9903.
296. 2+ transients that modulate secretion. Nature Cell Biol, 2:57–61.
297. Ölveczky, BP, and Verkman, AS. 1998. Monte carlo analysis of obstructed diffusion in three dimensions:Application to molecular diffusion in organelles. Biophys. J., 74:2722–2730.
298. Somogyi, R, and Stucki, JW. 1991. Hormone-induced calcium oscillations in liver cells can be explained by a simple one pool model. J. Biol. Chem., 266:11068–11077.
299. Sneyd J, 2002a An introduction to mathematical modeling in physiology, cell biology and immunology volume 59 of Proceedings of symposia in applied mathematics AMS short course lecture notes, Chapter, Calcium excitability; the dynamics of calcium oscillations and waves American Mathematical Society
300. Rooney, TA, Sass, EJ, and Thomas, AP. 1989. Characterization of cytosolic calcium oscillations induced by phenylephrine and vasopressin in single fura-2-loaded hepatocytes. J. Biol. Chem., 264:17131–17141.
301. Berridge, MJ, and Galione, A. 1988. Cytosolic calcium oscillators. FASEB J., 2:3074–3082.
302. Goldbeter A, (ed.) 1989 Cell to Cell Signalling:From Experiments to Theoretical Models, Academic Press London
303. 2+ oscillations and for their frequency encoding through protein phosphorylation. Proc. Nat. Acad. Sci. USA, 87:1461–1465.
304. 2+ oscillations, pages 449–459 In Goldbeter [302]
305. Höfer, T. 1999. Model of intercellular calcium oscillations in hepatocytes:Synchronization of heterogeneous cells. Biophys. J., 77:1244–1256.
306. 3-sensitive calcium channel kinetics. Biophys. J., 70:246–263.
307. 2+ concentration. Proc. Nat. Acad. Sci USA, 89:9895–9899.
308. c oscillations derived from a detailed kinetic model:A hodgkin-huxley like formalism. J. Theor. Biol., 166:461–473.
309. Parys, JB, Sernett, SW, DeLisle, S, Snyder, PM, Welsh, MJ, and Campbell, K. 1992. Isolation, characterization, and localization of the inositol 1,4,5-trisphosphate receptor protein in Xenopus laevis oocytes. J. Biol. Chem., 267:18776–18782.
310. 3 receptor-dependent calcium signaling. J. Gen. Physiol., 110:529–538.
311. 2+ oscillations. Am. J. Physiol., 269:C1079–C1092.
312. Swillens, S, Dupont, G, and Champeil, P. 1999. From calcium blips to calcium puffs:Theoretical analysis of the requirements for interchannel communication. Proc. Nat. Acad. Sci. USA, 96 (24):13750–13755.
313. 2+ buffering. EMBO J., 10:527–533.
314. 2+ signalling. Cell Calcium, 14:698–710.
315. 2+ oscillations in exocrine cells evoked by agonists and inositol trisphosphate. Cell, 74:661–668.
316. Sneyd, J, LeBeau, A, and Yule, D. 2000. Traveling waves of calcium in pancreatic acinar cells:model construction and bifurcation analysis. Physica D, 145:158–179.
317. Sneyd, J, and Dufour, J-F. 2002. A dynamic model of the type-2 inositol trisphosphate receptor. Proc. Nat. Acad. Sci. USA, 99 (4):2398–2403.
318. 2+-binding sites along the permeation pathway. Proc. Nat. Acad. Sci. USA, 91:10074–10078.
319. 2+ release from intracellular stores. Biochem. J., 370:621–629.
320. Muallem, S, Pandol, SJ, and Beeker, TG. 1989. Hormone-evoked calcium release from intracellular stors is a quantal process. J. Biol. Chem., 264:205–212.
321. 2+ store depends on inositol 1,4,5-trisphosphate concentration. Biochem. J., 266:189–194.
322. 2+ mobilization from intracellular stores of single histamine-stimulated HeLa cells. J. Physiol., 450:163–178.
323. 3-induced discharge of calcium from permeabilised hepatocyte pools. Cell Calcium, 14:279–292.
324. 2+ concentration?. FEBS Lett., 301:287–290.
325. 2+ release by inositol 1,4,5-trisphosphate. Biochemistry, 32:1270–1277.
326. 2+ mobilization from the intracellular stores of single histamine stimulated HeLa-cells. J. Physiol., 450:163–178.
327. 2+ release. J. Biol. Chem., 269:29621–29628.
328. 2+. Biochem. J., 326:215–220.
329. Missiaen, L, Parys, JB, DeSmedt, H, Oike, M, and Casteels, R. 1994. Partial calcium release in response to submaximal inositol 1,4,5-trisphosphate receptor activation. Mol. Cell. Endocrinol., 98:147–156.
330. 2+ mobilization. Biochem. J., 344:55–60.
331. 2+ release from permeabilized l1210 cells. Biochem. J., 289:861–866.
332. Sneyd, J, Falcke, M, Dufour, J-F, and Fox, C. 2004b. A comparison of three models of the inositol trisphosphate receptor. Prog. Biophys. Mol. Biol, 85:121–140.
333. Marhl, M, St. Schuster, Brumen, M, and Heinrich, R. 1997. Modelling the interrelations between calcium oscillations and er membrane potential oscillations. Biophys. Chem., 63:221–239.
334. 2+ increases the affinity of inositol 1,4,5-trisphosphate for its receptor. Biochem. J., 292 (3):631–633.
335. 2+] gradient across endoplasmic reticulum membranes by a null-point method. Biochem. J., 310:371–374.
336. Mezna, M, and Michelangeli, F. 1995. Alkali metal ion dependence of Inositol 1,4,5-trisphosphate-induced calcium release from rat cerebellar microsomes. J. Biol. Chem., 270 (47):28097–28102.
337. 2+ mobilization. Biochem. Soc. Trans., 23:637–642.
338. 2+. Nature, 395:908–912.
339. Woods, NM, Cuthbertson, KS, and Cobbold, PH. 1986. Repetitive transient rises in cytoplasmic free calcium in hormone-stimulated hepatocytes. Nature, 319:600–602.
340. Schuster, S, Mahrl, M, and Höfer, T. 2001. Modelling of simple and complex calcium oscillations. Eur. J. Biochem., 269:1333–1355.
341. Kummer, U, Olsen, LF, Dixon, CJ, Green, AK, Bornberg-Bauer, E, and Baier, G. 2000. Switching from simple to complex oscillations in calcium signaling. Biophys. J., 79:1188–1195.
342. Larsen AZ, Olsen LF, Kummer U, 2003 On the encoding and decoding of calcium signals in hepatocytes Biocomplexity (submitted)
343. Nash, MS, Young, KW, Chaliss, RAJ, and Nahorski, SR. 2000. Receptor specific messenger oscillations. Nature, 413:381–382.
344. 2+-mobilizing purinoreceptors on rat hepatocytes. Biochem. J., 269:499–502.
345. Dixon, CJ, Woods, NM, Webb, TE, and Green, AK. 2000. Evidence that rat hepatocytes coexpress functional p2y1 and p2y2 receptors. Br. J. Pharmacol., 129:764–770.
346. 2+ waves in astrocytes. Cell Calcium, 12:185–204.
347. Kindzelskii, AL, and Petty, HR. 2003. Intracellular calcium waves accompany neutrophil polarization, formylmethionylleucylphenylalanine stimulation, and phagocytosis:A highspeed microscopy study. J. Immunol., 170:64–72.
348. Dolmetsch, RE, Xu, K, and Lewis, RS. 1998. Calcium oscillations increase the efficiency and specificity of gene expression. Nature, 392:933–936.
349. 2+ oscillations. Science, 279:227–230.
350. 2+ spike frequency can optimize gene expression. Nature, 392:936–941.
351. RØttingen, J-A, and Iversen, J-G. 2000. Ruled by waves? Itracellular and intercellular calcium signalling. Acta Physiol. Scand., 169:203–219.
352. Bird, GSJ, Rossier, MF, Obie, JF, Jr. and Putney, JW. 1993. Sinusoidal oscillations in intracellular calcium due to negative feedback by protein kinase C. J. Biol. Chem., 268 (12):8425–8428.
353. Thomas, AP, Bird, GS, Hajnoczky, G, Robb-Gaspers, LD, and Puthey, JW. 1996. Spatial and temporal aspects of cellular calcium signaling. FASEB J., 10:1505–1517.
354. Rooney, TR, Renard, DC, Sass, EJ, and Thomas, AP. 1991. Oscillatory cytosolic calcium waves independent of stimulated inositol 1,4,5-trisphoasphate formation in hepatocytes. J. Biol. Chem., 266 (19):12272–12282.
355. Cornell-Bell, AH, Finkbeiner, SM, Cooper, MS, and Smith, SJ. 1990. Glutamate induces calcium waves in cultured astrocytes:Long range glial signaling. Science, 247:470–473.
356. 2+ oscillations in single rat hepatocytes. Biochem. J., 302:949–955.
357. 2+ oscillations in single hepatocytes. FEBS, 322 (2):197–200.
358. Kuznetsov YA, 1995 Elements of Applied Bifurcation Theory volume 112 of Applied Mathematical Sciences, Springer New York
359. Goldbeter A, 1996 Biochemical Oscillations and Cellular Rhythms, Cambridge University Press Cambridge
360. 2+ oscillations. Bioessays, 20:607–610.
361. 2+ oscillations. J. Theor. Biol., 166:431–442.
362. Tang, Y, and Othmer, HG. 1995. Frequency encoding in excitable systems with applications to calcium oscillations. Proc. Nat. Acad. Sci. USA, 92:7869–7873.
363. 2+ mobilization patterns. Science, 284:1527–-1530
364. Wakui, J, Potter, BVL, and Petersen, OH. 1989. Pulsatile intracellular calcium release does not depend on fluctuations in inositol trisphosphate concentration. Nature, 339:317–320.
365. Lechleiter, JD, and Clapham, D. 1992. Molecular mechanism of intracellular calcium excitability in Xenopus laevis oocytes. Cell, 69:283–294.
366. 2+ waves in the blowfly salivary gland. EMBO J., 18:3222–3231.
367. Nash, MS, Young, KW, Challiss, RAJ, and Nahorski, SR. 2001. Receptor-specific messenger oscillations. Nature, 413:381–382.
368. 2+ oscillations in a new model for non-excitable cells. Cell Calcium, 17:225–232.
369. Borghans, JAM, Dupont, G, and Goldbeter, A. 1997. Complex intracellular calcium oscillations:A theoretical exploration of possible mechanisms. Biophys. Chem., 66:25–41.
370. 2+ oscillations. Cell Calcium, 22:321–331.
371. Sims, C, and Allbritton, N. 1998. Metabolism of inositol 1,4,5-trisphosphate by the oocytes of Xenopus laevis. J. Biol. Chem, 273:4052–4058.
372. 2+-sensitivity, purification and antibody production. Biochem. J., 268:312–217.
373. 2+ oscillations. Bull. Math. Biol., 61:507–530.
374. 2+ oscillations:regulatory mechanisms and theoretical models chapter 8. Volume 623 of Falcke and Malchow [100]
375. 3. Biol. Cybern., 82:517–527.
376. α and m1 muscarinic cholinergic receptor. J. Biol. Chem., 271:7999–8007.
377. Chay, T, Fan, Y, and Lee, Y. 1995. Bursting, spiking, chaos, fractals and universality in biological rhythms. Int. J. Bifurc. Chaos, 5:595–635.
378. 2+ induced by ADP and ATP in single rat hepatocytes display differential sensitivity to application of phorbol ester. Biochem. J., 309:145–149.
379. Buchholtz, F, Golowasch, J, Epstein, R, and Marder, E. 1992. Mathematical model of an identified stomatogastric ganglion neuron. J. Neurophysiol., 67:332–340.
380. Turrigiano, G, LeMasson, G, and Marder, E. 1995. Selective regulation of current densities underlies spontaneous changes in the activity of cultures neurons. J. Neurophysiol., 15 (5):3640–3652.
381. Chay, T. 1996. Electrical bursting and lumenal calcium oscillation in excitable cell models. Biol. Cybern., 75:419–431.
382. + current by means of phosphatase and diffusible messenger. Nature, 364:814–818.
383. 2+ influx. Nature, 364:809–814.
384. Putney, JW. 1993. Excitement about calcium signaling in inexcitable cells. Science, 262:676–678.
385. 2+ stores activates a maitotoxin-sensitive nonselective cationic current in β-cells. J. Biol. Chem., 269:3255–3258.
386. Li, Y-X, Stojilkovic, SS, Keizer, J, and Rinzel, J. 1997. Sensing and refilling calcium stores in an excitable cell. BioPhys. J., 72:1080–1091.
387. 2+ sequestering er subcompartments. Bioelectrochem. Bioenerg., 46:79–90.
388. Lechleiter, JD, Girard, S, Clapham, D, and Peralta, E. 1991. Subcellular patterns of calcium release determined by g-protein-specific residues of muscarinic receptors. Nature, 350:505–508.
389. Dupont, G, Swillens, S, Clair, C, Tordjmann, T, and Combettes, L. 2000. Hierarchical organization of clacium signals in hepatocytes:from experiments to models. Biochim. Biophys. Acta, 1498:134–152.
390. 2+ wave propagation in pancreatic acinar cells. J. Biol. Chem., 267:18118–18121.
391. − current dynamics:insights from two functionally distinct mouse exocrine cells. J. Physiol., 540 (2):469–484.
392. 2+ waves in the blowfly salivary gland. Cell Calcium, 27 (5):297–307.
393. Dumollard, R, Carroll, J, Dupont, G, and Sardet, C. 2002b. Calcium wave pacemakers in eggs. J. Cell Sci., 115:3557–3564.
394. Mignery, GA, Südhof, TC, Takei, K, and DeCamilli, P. 1989. Putative receptor for inositol 1,4,5-trisphosphate similar to ryanodine receptor. Nature, 342:192–195.
395. Nishiyama, M, Hong, K, Mikoshiba, K, Poo, M, and Kato, K. 2002. Calcium stores regulate the polarity and input specificity of synaptic modification. Nature, 408:584–588.
396. Roth, BJ, Yagodin, SV, Holtzclaw, L, and Russel, JT. 1995. A mathematical model of agonist-induced propagation of calcium waves in astrocytes. Cell Calcium, 17:53–64.
397. 2+ wave patterns in hepatocytes. Am. J. Physiol., 267:G338–G349.
398. Combettes, L, Dumont, M, Berthon, B, Erlinger, S, and Claret, M. 1988. Release of calcium from the endoplasmic reticulum by bile acids in rat liver cells. J. Biol. Chem., 263:2299–2303.
399. Camacho, P, and Lechleiter, JD. 1993. Increased frequency of calcium waves in Xenopus laevis oocytes that express a calcium-atpase. Science, 260:226–229.
400. Camacho P, Lechleiter JD, 1995 Spiral calcium waves:Implications for signalling volume 188 of in Calcium Waves, Gradients and Oscillations, Ciba F. Symposium, Wiley Chichester
401. 2+ waves on SERCA expression. Biophys. J., 85:1474–1481.
402. Sneyd, J, Girard, S, and Clapham, D. 1993. Calcium wave propagation by calcium induced calcium release:An unusual excitable system. Bull. Math. Biol., 55:315–344.
403. 2+]. Bull. Math. Biol., 61:273–301.
404. Pearson, J, and Ponce-Dawson, S. 1998. Crisis on skid row. Physica A, 257:141–148.
405. 2+ release. Bull. Math. Biol., 63 (1):1–20.
406. Kupferman, R, Mitra, PP, Hohenberg, PC, and Wang, SS. 1997. Analytical calculation of intracellular calcium wave characteristics. Biophys. J., 72:2430–2444.
407. Pando, B, Pearson, JE, and Ponce-Dawson, S. 2003. Sheet excitability and nonlinear wave propagation. Phys. Rev. Lett., 91 (25):258101–1–4
408. Neher, E, and Augustine, GJ. 1992. Calcium gradients and buffers in bovine chromaffin cells. J. Physiol., 450:273–301.
409. Wang, SS-H, and Thompson, SH. 1995. Local positive feedback by calcium in the propagation of intracellular calcium waves. Biophys. J., 69:1683–1697.
410. Mikhailov AS, 1994 Foundations of Synergetics, volume 1,2 of Springer Series in Synergetics, Springer
411. Murray JD, 1993 Mathematical Biology, Springer-Verlag Berlin Heidelberg
412. Sneyd, J, and Atri, A. 1993. Curvature dependence of a model for calcium wave propagation. Physica D, 65:365–372.
413. Keener, JP, and Tyson, JJ. 1986. Singular perturbation theory of traveling waves in excitable media. Physica D, 32:327–361.
414. Keener, JP. 1986. A geomertic theory of spiral waves in excitable media. SIAM J. Appl. Math., 46:1039–1056.
415. 2+ release J. Math. Biol. 2003 http://dx.doi.org/10.1007/s00285-003-0205-y
416. Balmforth, NJ, Ierley, RG, and Spiegel, EA. 1994. Chaotic pulse trains. SIAM J. Appl. Math., 54:1291–1334.
417. Kohout, M, Schreiber, I, and Kubiček, M. 2002. A computational tool for nonlinear dynamical and bifurcation analysis of chemical engineering problems. Computers Chem. Eng., 26:517–527.
418. McKenzie, A, and Sneyd, J. 1998. On the formation and breakup of spiral waves of calcium. Int. J. Bifurcations Chaos, 8 (10):2003–2012.
419. 2+ waves in Xenopus oocytes. EMBO J., 18 (19):5285–5299.
420. Sneyd, J, and Sherrat, J. 1997. On the propagation of calcium waves in an inhomogeneous medium. SIAM J. Appl. Math., 57 (1):73–94.
421. 2+ waves and oscillations in exocrine pacreas. Cell, 74:669–677.
422. 2+ sparks. Biophys. J., 75:595–600.
423. Ponce-Dawson, S, Keizer, J, and Pearson, J. 1999. Fire-diffuse-fire model of dynamics of intracellular calcium waves. Proc. Nat. Acad. Sci. USA, 96:6060–6063.
424. Lemon, G. 2004. Fire-diffuse-fire calcium waves in confined intracellular spaces. Bull. Math. Biol., 66:65–90.
425. Mitkov, I, Kladko, K, and Pearson, J. 1998. Tunable pinning of burst waves in extended systems with discrete sources. Phys. Rev. Lett., 81:5453–5456.
426. Keener, JP. 1987. Propagation and its failure in coupled systems of discrete excitable cells. SIAM J. Appl. Math., 47:556–572.
427. 2+ release sites. Biophys. J., 73:2897–2906.
428. 2+ gradients triggering unidirectional fluid secretion from exocrine pancreas. Nature, 348:735–738.
429. 2+ signals. EMBO J., 18 (18):4999–5008.
430. Straub, SV, Giovanni, DR, and Yule, DI. 2000. Calcium wave propagation in pancreatic acinar cells:finctional interaction of inositol 1,4,5-trisphosphate receptors, ryanodine receptors, and mitochondria. J. Gen. Physiol., 116:547–560.
431. Leite, MF, Dranoff, JA, Gao, L, and Nathanson, MH. 1999. Expression and subcellular localization of the ryanodine receptor in rat pancreatic acinar cells. Biochem. J., 337:305–309.
432. 2+ channels in pancreatic and salivary gland cells. Correlation with initiation and propagation of Ca waves. J. Biol. Chem., 272:15765–15770.
433. Petersen, OH, Burdakov, D, and Tepikin, AV. 1999a. Polarity in intracellular calcium signalling. Bioessays, 21:851–860.
434. Petersen, OH. 1995. Local calcium spiking in pancreatic acinar cells. Ciba Found. Symp., 188:85–94.
435. 2+ signaling complexes in pancreatic acini. J. Biol. Chem., 271:24684–24690.
436. Kasai, H. 1995. Pancreatic calcium waves and secretion. Ciba Found. Symp., 188:104–116.
437. Yule, DI, Stuenkel, E, and Williams, JA. 1996. Intercellular calcium waves in rat pancreatic acini:mechanism of transmission. Am. J. Physiol., 40:C1285–C1294.
438. 2+ release. Biophys. J, 71:3477–3487.
439. 2+ signals in mouse pancreatic acinar cells. J. Physiol., 526 (3):515–526.
440. Ridgway, EB, Gilkey, JC, and Jaffe, LF. 1977. Free calcium increases explosively in activating medaka eggs. Proc. Natl. Acad. Sci. USA, 74:623–627.
441. 2+ release from intracellular stores. J. Cell Biol., 101:677–682.
442. Nuccitelli, R. 1991. How do sperm activate eggs?. Curr. Top. Dev. Biol., 25:1–16.
443. Fontanilla, RA, and Nuccitelli, R. 1998. Characterization of the sperm-induced calcium wave in Xenopus eggs using confocal microscopy. Biophys. J., 75:2079–2087.
444. Li, Y-X. 2003. Tango waves in a bidomain model of fertilization calcium waves. Physica D, 186 (1–2):27–49.
445. St. Stricker, A. 1996. Repetitive calcium waves induced by fertilization in the nemertean worm Cerebratulus lacteus. Dev. Biol., 176 (2):243–263.
446. 2+ oscillations in actvation of ascidian eggs. Dev. Biol., 203 (1):122–133.
447. Rizzuto, R, Simpson, AVM, Brini, M, and Pozzan, T. 1992. Rapid changes of mitochondrial calcium revealed by specifically targeted recombinant aequorin. Nature, 358:325–327.
448. Csordás, G, Thomas, AP, and Hajnóczky, G. 1999b. Quasi synaptic calcium signal transmission between endoplasmic reticulum and mitochondria. EMBO J., 18 (1):96–108.
449. 2+. J. Biol. Chem., 274 (20):14157–14162.
450. 2+ responses. Science, 280:1763–1766.
451. 29 cells. J. Biol. Chem., 273 (52):34961–34969.
452. 2+ influx by the action of dibutylhydroquinone and glucagon in the perfused rat liver. Biochem. J., 323:463–467.
453. 2+ transients. Biochim. Biophys. Acta, 1366:5–15.
454. 2+ network. J. Cell Biol., 136 (4):833–844.
455. 2+ signals. Curr. Opin. Neurobiol., 8:398–404.
456. Szado, T, Kuo, KH, Bernard-Herlay, K, Poburko, D, Lee, CH, Seow, C, Ruegg, UT, and van Breemen, C. 2003. Agonist induced mitochondrial transients in smooth muscle. FASEB J., 17:28–37.
457. 2+ wave amplification sites in cultured astrocytes. J. Neurosci. Res., 52:672–683.
458. 2+] in rat pulmonary artery smooth muscle cells. J. Physiol., 516 (1):139–147.
459. 2+ puffs and mitochondria in Xenopus oocytes. Am. J.Physiol., 282:C1374–C1386.
460. 2+ evoked by inositol trisphosphate in Xenopus oocytes. J. Physiol.(Cambridge), 482 (3):533–553.
461. 2+ waves. New J. Phys., 5:96. 1–96. 28
462. Fontanilla, RA, and Nuccitelli, R. 1998. Characterization of the sperm-induced calcium wave in Xenopus eggs using confocal microscopy. Biophys. J., 75:2079–2087.
463. Harris-White, ME, Zanotti, SA, Frautschy, SA, and Charles, AC. 1998. Spiral intercellular calcium waves in hippocampal slice cultures. J. Neurophysiol., 79:1045–1052.
464. Sanderson, MJ, Charles, AC, Boitano, S, and Dirksen, ER. 1994. Mechanism and function of intercellular calcium signalling. Mol. Cell. Endocrinol., 98:173–187.
465. 2+ in epithelial cells. Cell Regul., 1:585–596.
466. 2+ in cell injury, necrosis and apoptosis. Curr. Opin. Cell Biol., 4:227–232.
467. 2+ waves in epithelial cells. J. Cell Sci., 114:4185–4195.
468. Hassinger, TD, Atkinson, PB, Strecker, GJ, Wahlen, LR, Dudek, FE, Kossel, AH, and Kater, SB. 1995. Evidence for glutamate-mediated activation of hippocampal neurons by glial calcium waves. J. Neurobiol., 28:159–170.
469. Newman, EA, and Zahs, KR. 1997. Calcium waves in retinal glial cells. Science, 275:844–847.
470. Nedergaard, M. 1994. Direct signaling from astrocytes to neurons in cultures of mammalian brain cells. Science, 263:1768–1771.
471. Parpura, V, Basersky, T, Liu, F, Jeftinija, K, and Haydon, GP. 1994. Glutamate-mediated astrocyte-neuron signalling. Nature, 369:744–747.
472. Araque, A, Parpura, V, Sanzgiri, RP, and Haydon, PG. 1999. Tripartite synapses:glia, the unacknowledged partner. Trends Neurosci., 22:208–215.
473. Araque, A, Carmignoto, G, and Haydon, PG. 2001. Dynamic signaling between astrocytes and neurons. Annu. Rev. Physiol., 63:795–813.
474. 2+ signalling in articular chondrocytes. Biochem. Biophys. Res. Commun., 75:129–135.
475. Charles, AC, Naus, CG, Zhu, D, Kidder, GM, Dirksen, ER, and Sanderson, MJ. 1992. Intercellular calcium signalling via gap junctions in glioma cells. J. Cell Biol., 118:195–201.
476. Xia, SL, and Ferrier, J. 1992. Propagation of calcium pulses between osteoblastic cells. Biochem. Biophys. Rev. Commun., 186:1212–1219.
477. Atkinson, MM. 1989. Calcium and inositol 1,4,5-trisphosphate traverse gap junctional channels. J.Cell Biol., 109:100a
478. Sigurdson, W, Ruknudin, A, and Sachs, F. 1992. Calcium imaging of mechanically induced fluxes in tissue-cultured chick heart:role of stretch activated ion channels. Am. J.Physiol., 31:H1110–H1115.
479. Enkvist, MOK, and McCarthy, KD. 1992. Activation of protein kinase C blocks astroglial gap junction communication and inhibits the spread of calcium waves. J. Neurochem., 59:519–526.
480. Sandberg, K, Ji, H, Iida, T, and Catt, KJ. 1992. Intercellular communiation between follicular angiotensin receptors and Xenopus laevis oocytes:mediation by an inositol 1,4,5-trisphosphate dependent mechanism. J. Cell Biol., 117:157–167.
481. 2+ waves are organized among hepatocytes in the intact organ. Am. J. Physiol., 269:G167–G171.
482. Schlosser, S, Burgstahler, A, and Nathanson, M. 1996. Isolated rat hepatocytes can signal to other hepatocytes and bile duct cells by release of nucleotides. Proc. Nat. Acad. Sci. USA, 93:9948–9953.
483. Dunlap, K, Takeda, K, and Brehm, P. 1987. Activation of a calcium-dependent photoprotein by chemical signalling through gap junctions. Nature, 325:60–62.
484. Brehm, P, Lechleiter, J, Smith, S, and Dunlap, K. 1989. Intercellular signaling as visualized by endogenous calcium-dependent bioluminescence. Neuron, 3:191–198.
485. Sanderson, MJ, and Dirksen, ER. 1985. A versatile and quantitative computer-assisted photoelectronic technique used for analysis of ciliary beat cycles. Cell Motil., 5:267–292.
486. Sanderson, MJ, and Dirksen, ER. 1988. Fura-2 fluorescence reveals that intercellular communiation elevates intracellular calcium in tracheal ciliated cells. Biophys. J., 53:52a
487. Sanderson, MJ. 1996. Intercellular waves of communication. News Physiol. Sci., 11:262–269.
488. Fedoroff S, Vernadakis A, (eds) 1986 Astrocytes, Academic Press New York
489. Mugnaini E, 1986 Cell junctons of astrocytes, ependymal and related cells in the mammalian central vervous system, with emphasis on the hypothesis of a generalized functional syncytium of supporting cells pages 329–371 In Fedoroff and Vernadakis [488]
490. Volterra A, Magistretti P, Haydon P, (eds) 2002 Tripartite synapses:Synaptic transmission with glia, Oxford University Press Oxford
491. Charles, AC, Dirksen, ER, Merrill, JE, and Sanderson, MJ. 1991. Intercellular signalling in glial cells:calcium waves and oscillations in response to mechanical stimulation and glutamate. Neuron, 6:983–992.
492. Charles AC, Giaume C, 2002 Intercellular calcium waves in astrocytes:Underlying mechanisms and functional significance. In Volterra et al. [490]
493. Dani JW, Chernjavsky A, Smith SJ, 1992 Neuronal activity triggers calcium waves in hippocampal astrocyte networks 8 429 440
494. Giaume, C, and Venance, L. 1998. Intercellular calcium signaling and gap junctional communication in astrocytes. Glia, 24:50–64.
495. Charles, A. 1998. Intercellular calcium waves in glia. Glia, 24:39–49.
496. Scemes, E. 2001. Components of astrocytic intercellular calcium signaling. Mol. Neurobiol., 22 (1–3):167–179.
497. Venance, L, Stella, N, Glowinsji, J, and Giaume, J. 1997. Mechanism involved in initiation and propagation of receptor-induced intercellular calcium signaling in cultured rat astrocytes. J. Neurosci., 17 (6):1981–1992.
498. Kim, WT, Rioult, G, and Cornell-Bell, AH. 1994. Glutamate induced signaling in astrocytes. Glia, 11:173–184.
499. 2+ exchanger. J. Neurochem., 64 (Suppl 1):36
500. Zanotti, S, and Charles, A. 1997. Extracellular calcium sensing by glial cells:low extracellular calcium induces intracellular calcium release and intercellular signaling. J. Neurosci., 25:563
501. Finkbeiner, S. 1992. Calcium waves in astrocytes — filling in the gaps. Neuron, 8:1101–1108.
502. Wang, Z, Tymianski, M, Jones, OT, and Nedergaard, M. 1997. Impact of cytoplasmic calcium buffering on the spatial and temporal characterisitics of intercellular calcium signals in astrocytes. J. Neurosci., 17:7359–7371.
503. Hansen, M, Boitano, S, Dirksen, ER, and Sanderson, MJ. 1993. Intercellular calcium signaling induced by extracellular adenosine 5′-trisphosphate and mechanical stimulation in airway epithelial cells. J. Cell Sci., 106:995–1004.
504. Scemes, E, Dermietzel, R, and Spray, DC. 1998. Calcium waves between astrocytes from Cx43 knockout mice. Glia, 24:65–73.
505. Van den Pol, A, Finkbeiner, SM, and Cornell-Bell, AH. 1992. Calcium excitability and oscillations in suprachiasmatic nucleus neurons and glia in vitro. J. Neurosci., 12:2648–2664.
506. Boitano, S, Dirksen, ER, and Sanderson, MJ. 1992. Intercellular propagation of calcium waves mediated by inositol trisphosphate. Science, 258:292–295.
507. Charles, AC, Dirksen, ER, Merrill, JE, and Sanderson, MJ. 1993. Mechansim of intercellular calcium signalling in glial cells studied with dantrolene and thapsigargin. Gila, 7:134–145.
508. Carter, TD, Chen, XY, Carlile, G, Kalapothakis, E, Ogden, DC, and Ewans, WH. 1994. Cultured porcine aortic endothelial gap junctions:characterization and permeation by second messenger molecules. J. Physiol., 475:74
509. Leybaert, L, Paemeleire, K, Strahonja, A, and Sanderson, MJ. 1998. Inositol-trisphosphate-dependent intercellular calcium signaling in and between astrocytes and endothelial cells. Glia, 24:398–407.
510. Sneyd, J, Charles, C, and Sanderson, MJ. 1994. A model for the propagation of intercellular calcium waves. Am. J. Physiol., 266:C293–C302.
511. Höfer, T, Venance, L, and Giaume, C. 2002. Control and plasticity of intercellular calcium waves in astrocytes:A modeling approach. J. Neurosci., 22 (12):4850–4859.
512. Khodakan, K, and Ogden, D. 1993. Functional heterogeneity of calcium release by inositol trisphophate in single purkinje neurons, cultured cerebellar astrocytes, and peripheral tissues. Proc. Nat. Acad. Sci. USA, 90:4976–4980.
513. Osipchuk, Y, and Calhan, M. 1992. Cell-to-cell spread of calcium signals mediated by ATP receptors in mast cells. Nature, 359:241–244.
514. Hassinger, TD, Guthrie, PB, Atkinson, PB, Bennet, MVL, and Kater, SB. 1996. An extracellular signaling component in propagation of astrocytic calcium waves. Proc. Nat. Acad. Sci. USA, 93:13268–13273.
515. Cotrina, ML, Lin, JHC, Alves-Rodrigues, A, Liu, S, Li, J, Azmi-Ghadim, H, Kang, J, Naus, CCG, and Nedergaard, M. 1998. Connexins regulate calcium signaling by controlling ATP release. Proc. Nat. Acad. Sci. USA, 95 (26):15735–15740.
516. Guthrie, PB, Knappenberger, J, Segal, M, Bennet, MVL, and Kater, SB. 1999. ATP released from astrocytes mediates glial calcium waves. J. Neurosci., 19:520–528.
517. Murphy S, (ed.) 1993 Astrocytes:Pharmaclolgy and Functions, Academic Press New York
518. Bruner G, Simmons ML, Murphy S, 1993 Astrocytes:Targets and sources of purine, elcosanoids, and nitrosyl compounds In Murphy [517]
519. Finkbeiner, S. 1993. Glial calcium. Glia, 9:83–104.
520. Enomoto, K, Furuya, K, Yamagishi, S, and Maeno, T. 1992. Mechanically induced eectrically and intracellular calcium responses in normal and cancerous mammary cells. Cell Calcium, 13:501–511.
521. Cotrina, ML, Lin, JH, Alves-Rodrigues, A, Liu, S, Li, J, Azmi-Ghadimi, H, Kang, J, and Nedergaard, M. 1998. Connexins regulate calcium signaling by controling ATP release. Proc. Nat. Acad. Sci. USA, 95 (26):15735–15740.
522. Stout, CE, Constantin, JL, Naus, CCG, and Charles, AC. 2002a. Intercellular calcium signaling in astrocytes via ATP release through connexin hemichannels. J. Biol. Chem., 277 (12):10482–10488.
523. Li, H, Liu, TF, Lazrak, A, Perracchia, C, Goldberg, GS, Lampe, PD, and Johnson, RG. 1996. Properties and regulation of gap junctional hemichannels in the plasma membrane of cultured cells. J. Cell Biol., 134:1019–1030.
524. Harris, AL. 2001. Emerging issues of connexin channels:biophysics fills the gap. Q. Rev. Biophys., 34:325–472.
525. Stout, C, and Charles, A. 2003. Modulation of intercellular calcium signaling in astrocyes by extracellular calcium and magnesium. Glia, 43:265–273.
526. Wang, Z, Haydon, PG, and Yeung, ES. 2001. Direct observation of calcium-independent ATP siganling in astrocytes. Anal. Chem., 72 (9):2001–2007.
527. Newman, EA. 2001. Propagation of intercellular calcium waves in retinal astrocytes and Müller cells. J. Neurosci., 21 (7):2215–2223.
528. Arcuino, G, Lin, JH, Takano, T, Liu, C, Jiang, L, Gao, Q, Kang, J, and Nedergaard, M. 2002. Intercellular calcium signaling mediated by point-source burst release of ATP. Proc. Nat. Acad. Sci. USA, 99:9840–9845.
529. Scemes, E, Suadicani, SO, and Spray, DC. 2000. Intercellular communication in spinal cord astrocytes:fine tuning between gap junctions and p2 necleotide receptors in calcium wave propagation. J. Neurosci., 20 (4):1435–1445.
530. Zimmermann, B, and Walz, B. 1997. Serotonin-induced intercellular calcium waves in salivary glands of the blowfly. calliphora erythrcephalla. J. Physiol., 500:17–28.
531. 3. Science, 251:75–78.
532. 2+ channels as key positive feedback elements. Cell Calcium, 12:153–164.
533. Sneyd, J, Wetton, B, Charles, C, and Sanderson, MJ. 1995. Intercellular calcium waves mediated by the diffusion of inositol trisphosphate:a two-dimensional model. Am. J. Physiol., 268:C1537–C1545.
534. Demer, LL, Wortham, CM, Dirksen, ER, and Sanderson, MJ. 1993a. Mechanical stimulation induces intercellular calcium signalling in bovine aortic endothelial cells. Am. J. Physiol., 264:H2094–H2102.
535. Sneyd, J, Wilkins, M, Strahonja, A, and Sanderson, M. 1998a. Calcium waves and oscillations driven by an intercellular gradient of inositol (1,4,5)-trisphosphate. Biophys. Chem., 72:101–109.
536. 2+ waves in the intact liver. J. Biol. Chem., 270 (14):8102–8107.
537. Wilkins, M, and Sneyd, J. 1998. Intercellular spiral waves of calcium. J. Theor. Biol., 191:299–308.
538. Hunter, PF, McNaughton, PA, and Noble, D. 1975. Analytical models of propagation in excitable cells. Prog. Biophys. Mol. Biol., 30:99–144.
539. Weidmann, S. 1966. The diffusion of radiopotassium across intercalated disks of mammalian cardiac muscle. J. Physiol., 187:323–342.
540. Pawelczyk, T, and Matecki, A. 1997. Structural requirements of phospho-lipase c delta 1 for regulation by spermine, sphingosine and sphingo-myelin. Eur. J. Biochem., 248:459–465.
541. Nathanson, M, and Burgstahler, A. 1992. Coordination of hormone-induced calcium signals in isolated rat hepatocytes couplets. Demonstration with confocal microscopy. Mol. Biol. Cell, 3:113–121.
542. Patel, S, Robb-Gaspers, LD, Stellato, KA, Shon, M, and Thomas, AP. 1999. Coordination of calcium signalling by endothelial-derived nitirc oxide in the intact liver. Nat. Cell Biol., 1:467–471.
543. 2+ agonists in the perfused liver:determination via laser scanning confocal microscopy. Am. J. Physiol., 276:R575–R585.
544. 2+ signals in multicellular systems of rat hepatocytes. Biochem. J., 304:585–594.
545. Tordjmann, T, Berthon, B, Jacquemin, E, Clair, C, Stelly, N, Guillon, G, Claret, M, and Combettes, L. 1998. Receptor-oriented intercellular calcium waves evoked by vasopressin in rat hepatocytes. EMBO J., 17 (16):4695–4703.
546. Tordjmann, T, Berthon, B, Claret, M, and Combettes, L. 1997. Coordinated intercellular calcium waves induced by noradrenalin in rat hepatocytes:dual control by gap junction permeability and agonist. EMBO J., 16 (17):5398–5407.
547. Dupont, G, Tordjmann, T, Clair, C, Swillens, S, Claret, M, and Combettes, L. 2000. Mechanism of receptor-oriented intercellular calcium wave propagation in hepatocytes. FASEB J., 14:279–289.
548. Tordjmann, T, Bertho, B, Jacquemin, E, Clair, C, Stelly, N, Guillon, G, Claret, M, and Combettes, L. 1997. Receptor-oriented intercellular calcium waves evoked by vasopressin in rat hepatocytes. EMBO J., 17:4695–4703.
549. 2+ signals between connected hepatocytes. J. Cell Biol., 114:1999–2007.
550. 2+ diffusion:A theoretical study. Biophys. J., 80:75–78.
551. Arnol'd VI, Ordinary Differential Equations, MIT Press Cambridge MA
552. Arnol'd VI, 1983 Geometrical Methods in the Theory of Ordinary Differential Equations, Springer New York
553. Reber, BFX, and Schindelholz, B. 1996. Detection of a trigger zone of bradykinin-induced fast calcium waves in PC12 neurites. Pflügers Arch.-Eur. J. Physiol., 432:893–903.
554. Heemskerk, JWM, Willems, GM, Rook, MB, and Sage, SO. 2001. Ragged spiking of free calcium in ADP-stimulated human platelets:regulation of puff-like calcium signals in vitro and ex vivo. J. Physiol., 535 (3):625–635.
555. Horne, JH, and Meyer, T. 1997. Elementary calcium-release units induced by inositol trisphosphate. Science, 276:1690–1693.
556. 2+ transients associated with openings of inositol trisphosphate gated channels in Xenopus oocytes. J. Physiol. (Lond.), 491:663–668.
557. Wilson, BS, Pfeiffer, JR, Smith, AJ, Oliver, JM, Oberdorf, JA, and Wojcikiewicz, RJH. 1998. Calcium-dependent clustering of inositol 1,4,5-trisphosphate receptors. Mol. Biol. Cell, 9:1465–1478.
558. Parker, I, and Ivorra, I. 1992. Characteristics of membrane currents evoked by photorelease of inositol trisphosphate in Xenopus oocytes. Am. J. Physiol., 263:C154–C165.
559. 2+ signalling in HeLa cells. J. Physiol, 499 (2):307–314.
560. Lipp, P, Thomas, D, Berridge, MJ, and Bootman, MD. 1997b. Nuclear calcium signalling by individual cytopasmic calcium puffs. EMBO J., 16 (23):7166–7173.
561. 2+ signals. J. Cell Sci., 114 (12):2213–2222.
562. 2+ release of inositol 1,4,5-trisphosphate receptor clusters. Biophys. J., 83 (1):87–97.
563. Pikovski, AS, and Kurths, J. 1997. Coherence resonance in a noise-driven excitable system. Phys. Rev. Lett., 78 (5):775–778.
564. Meinhold, L, and Schimansky-Geier, L. 2002. Analytic description of stochastic calcium-signaling periodicity. Phys. Rev. E, 66:050901–1–4
565. Bär, M, Falcke, M, Tsimring, L, and Levine, H. 2000. Discrete stochastic modeling of calcium channel dynamics. Phys. Rev. Lett., 84:5664–5667.
566. Jung, P, and Galley, PC. 2000. The heartbeat of extended clocks. Ann. Phys., 9 (9–10):697–704.
567. 2+ waves in saponin-permeabilized rat ventricular myocytes. J. Physiol., 521 (3):575–585.
568. 2+ dynamics. Phys. Biol., 1:27–40.
569. Henry, H, and Levine, H. 2003. Wave nucleation rate in excitable systems in the low noise limit. Phys. Rev. E, 68:031914
570. Shuai, JW, and Jung, P. 2003. Optimal ion channel clustering for intracellular calcium signaling. Proc. Nat. Acad. Sci. USA, 100 (2):506–510.
571. Hempel, H, Schimansky-Geier, L, and Garcúa-Ojalvo, J. 1999. Noise-sustained pulsating patterns and global oscillations in subexcitable media. Phys. Rev. Lett., 82 (18):3713–3716.
572. Zhou, C, Kurths, J, and Hu, B. 2001. Array-enhanced coherence resonance:nontrivial effects of heterogeneity and spatial independence of noise. Phys. Rev. Lett., 87:098101
573. Hu, B, and Zhou, C. 2000. Phase synchronization in coupled nonidentical excitable systems and array-enhanced coherence resonance. Phys. Rev. E, 61:R1001–R1004.
574. 2+ release. Phys. Rev. E, 68:021915
575. 2+ signals. J. Physiol., 553 (3):775–788.
576. Jung, P, and Mayer-Kress, G. 1994. Noise controlled spiral growth in excitable media. Chaos, 5 (2):458–462.
577. Aranson, I, Malomed, BA, Pismen, LM, and Tsimring, LS. 2000. Crystallization kinetics and self-induced pinning in cellular patterns. Phys. Rev. E, 62 (1):R5–R8.
578. Gray, PTA. 1988. Oscillations of free cytosolic calcium evoked by cholinergic and catecholaminonergic agonists in rat parotid acinar gland cells. J. Physiol., 406:35–53.
579. Jacob, R, Merritt, JE, Hallam, TJ, and Rink, TR. 1988. Repetitive spikes in cytoplasmic calcium evoked by histamine in human endothelial cells. Nature, 335:40–45.
580. 2+] in guinea-pig hepatocytes. Biochem. J., 275:277–280.