Improvement of the cDNA-AFLP method using fluorescent primers for transcription analysis in bacteria

Journal of Microbiological Methods

Volumn 63, Issue 2, 2005, Pages 211-215

  Decorosi, Francesca ^a   Viti, Carlo ^a   Mengoni, Alessio ^a   Bazzicalupo, Marco ^a   Giovannetti, Luciana ^a  

^a UNIVERSITY OF FLORENCE   (Italy)

Author keywords

cDNA AFLP; cDNA FAFLP; Chromate; Cupriavidus metallidurans (formerly Ralstonia metallidurans); Real time PCR; Transcription analysis

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BACTERIAL GENE; FLUORESCENCE; GENE IDENTIFICATION; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RELIABILITY;

BACTERIA; BACTERIAL PROTEINS; BURKHOLDERIACEAE; DNA PRIMERS; DNA, COMPLEMENTARY; FLUORESCENT DYES; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; TRANSCRIPTION, GENETIC;

WAUTERSIA METALLIDURANS;

EID: 26644474111     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2005.04.002     Document Type: Article

References (15)

1. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
2. C.W. Bachem, R.S. van der Hoeven, S.M. de Bruijn, D. Vreugdenhil, M. Zabeau, and R.G. Visser Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development Plant J. 9 1996 745 753
3. C. Cervantes, J. Campos-Garcia, S. Devars, F. Gutierrez-Corona, H. Loza-Tavera, J.C. Torres-Guzman, and R. Moreno-Sanchez Interactions of chromium with microorganisms and plants FEMS Microbiol. Rev. 25 2001 335 347
4. A. Dellagi, P.R. Birch, J. Heilbronn, G.D. Lyon, and I.K. Toth cDNA-AFLP analysis of differential gene expression in the prokaryotic plant pathogen Erwinia carotovora Microbiology 146 2000 165 171
5. W.E. Durrant, O. Rowland, P. Piedras, K.E. Hammond-Kosack, and J.D. Jones cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles Plant Cell 12 2000 963 977
6. P. He, B.R. Friebe, B.S. Gill, and J.M. Zhou Allopolyploidy alters gene expression in the highly stable hexaploid wheat Plant Mol. Biol. 52 2003 401 414
7. S. Juhnke, N. Peitzsch, N. Hübener, C. Große, and D.H. Nies New genes involved in chromate resistance in Ralstonia metallidurans strain CH34 Arch. Microbiol. 179 2002 15 25
8. M. Mergeay Heavy metal resistances in microbial ecosystems A.D.L. Akkermans F.J. van Elsas J.D. de Bruijn Molecular Microbial Ecology Manual 1995 Kluwer Academic Publishing Dordrecht, The Netherlands 6.1.7/1 6.1.7/17
9. D. Milioni, P.E. Sado, N.J. Stacey, C. Domingo, K. Roberts, and M.C. McCann Differential expression of cell-wall-related genes during the formation of tracheary elements in the Zinnia mesophyll cell system Plant Mol. Biol. 47 2001 221 238
10. L. Noel, F. Thieme, D. Nennstiel, and U. Bonas cDNA-AFLP analysis unravels a genome-wide hrpG-regulon in the plant pathogen Xanthomonas campestris pv. vesicatoria Mol. Microbiol. 41 2001 1271 1281
11. M.W. Pfaffl, G.W. Horgan, and L. Dempfle Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR Nucleic Acids Res. 30 2002 e36
12. M. Reijans, R. Lascaris, A.O. Groeneger, A. Wittenberg, E. Wesselink, J. van Oeveren, E. de Wit, A. Boorsma, B. Voetdijk, H. van der Spek, L.A. Grivell, and G. Simons Quantitative comparison of cDNA-AFLP, microarrays, and GeneChip expression data in Saccharomyces cerevisiae Genomics 82 2003 606 618
13. Y.D. Tan, C. Wan, Y. Zhu, C. Lu, Z. Xiang, and H.W. Deng An amplified fragment length polymorphism map of the silkworm Genetics 157 2001 1277 1284
14. P. Vandamme, and T. Coenye Taxonomy of the genus Cupriavidus: a tale of lost and found Int. J. Syst. Evol. Microbiol. 54 2004 2285 2289
15. P. Vos, R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau AFLP: a new technique for DNA fingerprinting Nucleic Acids Res. 23 1995 4407 4414