Refinement of protein cores and protein-peptide interfaces using a potential scaling approach

Protein Engineering, Design and Selection

Volumn 18, Issue 10, 2005, Pages 465-476

  Riemann, Ralph Nico ^a,b   Zacharias, Martin ^a  

^a JACOBS UNIVERSITY BREMEN   (Germany)

^b FRITZ LIPMANN INSTITUTE   (Germany)

Author keywords

Molecular dynamics simulation; Peptide protein docking; Potential smoothing; Protein design; Side chain prediction

Indexed keywords

APPROXIMATION THEORY; COMPUTER SIMULATION; DOCKING; MOLECULAR DYNAMICS; OPTIMIZATION; POLYPEPTIDES;

MOLECULAR DYNAMICS SIMULATION; PEPTIDE-PROTEIN DOCKING; POTENTIAL SMOOTHING; PROTEIN DESIGN; SIDE CHAIN PREDICTION;

PROTEINS;

PEPTIDE; PROTEIN; SOLVENT;

ACCURACY; ARTICLE; MOLECULAR DYNAMICS; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN STRUCTURE; SIMULATION; STATISTICAL SIGNIFICANCE;

AMINO ACID SEQUENCE; COMPUTER SIMULATION; DNA-BINDING PROTEINS; MODELS, CHEMICAL; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEINS; REPRESSOR PROTEINS; SEQUENCE ALIGNMENT; SOLVENTS; VIRAL PROTEINS;

EID: 26444587477     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/gzi052     Document Type: Article

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