-
1
-
-
0028220048
-
Synonymous codon usage in Drosophila melanogaster. Natural selection and translational accuracy
-
Akashi H (1994) Synonymous codon usage in Drosophila melanogaster. Natural selection and translational accuracy. Genetics 136:927-935
-
(1994)
Genetics
, vol.136
, pp. 927-935
-
-
Akashi, H.1
-
3
-
-
0029153552
-
The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences insaccharomyces cerevisiae
-
Bonetti B, Fu L, Moon J, Bedwell DM (1995) The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences insaccharomyces cerevisiae. J Mol Biol 251:334-345
-
(1995)
J Mol Biol
, vol.251
, pp. 334-345
-
-
Bonetti, B.1
Fu, L.2
Moon, J.3
Bedwell, D.M.4
-
4
-
-
0025106975
-
Sequence analysis suggests that tetra-nucleotides signal the termination of protein synthesis in eukaryotes
-
Brown C, Stockwell P, Trotman C, Tate W (1990) Sequence analysis suggests that tetra-nucleotides signal the termination of protein synthesis in eukaryotes. Nucleic Acids Res 18:6339-6345
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 6339-6345
-
-
Brown, C.1
Stockwell, P.2
Trotman, C.3
Tate, W.4
-
5
-
-
0001828219
-
UAG readthrough in mammalian cells: Effect of upstream and downstream stop codon contexts reveal different signals
-
Cassan M, Rousset JP (2001) UAG readthrough in mammalian cells: Effect of upstream and downstream stop codon contexts reveal different signals. BMC Mol Biol 2:3
-
(2001)
BMC Mol Biol
, vol.2
, pp. 3
-
-
Cassan, M.1
Rousset, J.P.2
-
6
-
-
0034666040
-
Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae
-
Coghlan A, Wolfe KH (2000) Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. Yeast 16:1131-1145
-
(2000)
Yeast
, vol.16
, pp. 1131-1145
-
-
Coghlan, A.1
Wolfe, K.H.2
-
8
-
-
0346104825
-
Mammalian mutation pressure, synonymous codon choice, and mRNA degradation
-
Duan J, Antezana MA (2003) Mammalian mutation pressure, synonymous codon choice, and mRNA degradation. J Mol Evol 57:694-701
-
(2003)
J Mol Evol
, vol.57
, pp. 694-701
-
-
Duan, J.1
Antezana, M.A.2
-
9
-
-
0036889468
-
Evolution of synonymous codon usage in metazoans
-
Duret L (2002) Evolution of synonymous codon usage in metazoans. Curr Opin Genet Dev 12:640-649
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 640-649
-
-
Duret, L.1
-
10
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
-
USA
-
Duret L, Mouchiroud D (1999) Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc Natl Acad Sci USA 96:4482-4487
-
(1999)
Proc Natl Acad Sci
, vol.96
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
11
-
-
0034082076
-
Genetic drift in an infinite population. The pseudohitchhiking Model
-
Gillespie JH (2000) Genetic drift in an infinite population. The pseudohitchhiking Model. Genetics 155:909-919
-
(2000)
Genetics
, vol.155
, pp. 909-919
-
-
Gillespie, J.H.1
-
12
-
-
0141814791
-
Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia
-
Herbeck JT, Wall DP, Wernegreen JJ (2003) Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia. Microbiology 149:2585-2596
-
(2003)
Microbiology
, vol.149
, pp. 2585-2596
-
-
Herbeck, J.T.1
Wall, D.P.2
Wernegreen, J.J.3
-
13
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker IL (2003) Vienna RNA secondary structure server. Nucleic Acids Res 31:3429-3431
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
14
-
-
0031720281
-
Codon usages in different gene classes of the Escherichia coli genome
-
Karlin S, Mrazek J, Campbell AM (1998) Codon usages in different gene classes of the Escherichia coli genome. Mol Microbiol 29:1341-1355
-
(1998)
Mol Microbiol
, vol.29
, pp. 1341-1355
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.M.3
-
15
-
-
0034888743
-
Characterizations of highly expressed genes of four fast-growing bacteria
-
Karlin S, Mrazek J, Campbell A, Kaiser D (2001) Characterizations of highly expressed genes of four fast-growing bacteria. J Bacteriol 183:5025-5040
-
(2001)
J Bacteriol
, vol.183
, pp. 5025-5040
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.3
Kaiser, D.4
-
16
-
-
0037439231
-
New EMBO member's review: Termination of translation: Interplay of mRNA, rRNAs and release factors?
-
Kisselev L, Ehrenberg M, Frolova L (2003) New EMBO member's review: Termination of translation: Interplay of mRNA, rRNAs and release factors? EMBO J 22:175-182
-
(2003)
EMBO J
, vol.22
, pp. 175-182
-
-
Kisselev, L.1
Ehrenberg, M.2
Frolova, L.3
-
17
-
-
0028040734
-
The effects of mutation and natural selection on codon bias in the genes of Drosophila
-
Kliman RM, Hey J (1994) The effects of mutation and natural selection on codon bias in the genes of Drosophila. Genetics 137:1049-1056
-
(1994)
Genetics
, vol.137
, pp. 1049-1056
-
-
Kliman, R.M.1
Hey, J.2
-
18
-
-
0041670890
-
Selection conflicts, gene expression, and codon usage trends in yeast
-
Kliman RM, Irving N, Santiago M (2003) Selection conflicts, gene expression, and codon usage trends in yeast. J Mol Evol 57:98-109
-
(2003)
J Mol Evol
, vol.57
, pp. 98-109
-
-
Kliman, R.M.1
Irving, N.2
Santiago, M.3
-
19
-
-
0035220937
-
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
-
research 0010.1-10.13
-
Knight RD, Freeland SJ, Landweber LF (2001) A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. Genome Biol 2: research 0010.1-10.13.
-
(2001)
Genome Biol
, vol.2
-
-
Knight, R.D.1
Freeland, S.J.2
Landweber, L.F.3
-
20
-
-
0036133146
-
Correlations between mRNA expression levels and GC contents of coding and untranslated regions of genes in rodents
-
Konuo D, Li M (2002) Correlations between mRNA expression levels and GC contents of coding and untranslated regions of genes in rodents. J Mol Evol 54:35-41
-
(2002)
J Mol Evol
, vol.54
, pp. 35-41
-
-
Konuo, D.1
Li, M.2
-
21
-
-
1142302213
-
Selection on codon usage in Drosophila Americana
-
Maside X, Lee AW, Charlesworth B (2004) Selection on codon usage in Drosophila Americana. Curr Biol 20:150-154
-
(2004)
Curr Biol
, vol.20
, pp. 150-154
-
-
Maside, X.1
Lee, A.W.2
Charlesworth, B.3
-
22
-
-
0029047851
-
Translational termination efficiency in mammals is influenced by the base following the stop codon
-
USA
-
McCaughan K, Brown C, Dalphin M, Berry M, Tate W (1995) Translational termination efficiency in mammals is influenced by the base following the stop codon. Proc Natl Acad Sci USA 6:5431-5435
-
(1995)
Proc Natl Acad Sci
, vol.6
, pp. 5431-5435
-
-
McCaughan, K.1
Brown, C.2
Dalphin, M.3
Berry, M.4
Tate, W.5
-
23
-
-
0030828410
-
Only the last amino acids in the nascent peptide influence translation termination in Escherichia coli genes
-
Mottagui-Tabar S, Isaksson LA (1997) Only the last amino acids in the nascent peptide influence translation termination in Escherichia coli genes. FEBS Lett 414:165-170
-
(1997)
FEBS Lett
, vol.414
, pp. 165-170
-
-
Mottagui-Tabar, S.1
Isaksson, L.A.2
-
24
-
-
0032189779
-
The influence of 5′ codon context on translation termination in Saccharomyces cerevisiae
-
Mottagui-Tabar S, Tuite MF, Isaksson LA (1998) The influence of 5′ codon context on translation termination in Saccharomyces cerevisiae. Eur J Biochem 257:249-254
-
(1998)
Eur J Biochem
, vol.257
, pp. 249-254
-
-
Mottagui-Tabar, S.1
Tuite, M.F.2
Isaksson, L.A.3
-
25
-
-
0034779875
-
Impact of the six nucleotides downstream of the stop codon on translation termination
-
Namy O, Hatin I, Rousset J-P (2001) Impact of the six nucleotides downstream of the stop codon on translation termination EMBO Rep 2:787-793
-
(2001)
EMBO Rep
, vol.2
, pp. 787-793
-
-
Namy, O.1
Hatin, I.2
Rousset, J.-P.3
-
26
-
-
0036087522
-
UTRdb and UTRsite: Specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Update 2002
-
Pesole G, Liuni S, Grillo G, Licciulli F, Mignone F, Gissi C, Saccone C (2002) UTRdb and UTRsite: specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res 30:335-340
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 335-340
-
-
Pesole, G.1
Liuni, S.2
Grillo, G.3
Licciulli, F.4
Mignone, F.5
Gissi, C.6
Saccone, C.7
-
27
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet 16:276-277
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
28
-
-
0023042012
-
The information content of binding sites on nucleotide sequences
-
Schneider TD, Stormo GD, Gold L, Ehrenfeuch A (1986) The information content of binding sites on nucleotide sequences. J Mol Biol 188:415-431
-
(1986)
J Mol Biol
, vol.188
, pp. 415-431
-
-
Schneider, T.D.1
Stormo, G.D.2
Gold, L.3
Ehrenfeuch, A.4
-
29
-
-
0023650543
-
The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
-
Sharp P, Li W (1987) The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15:1281-1295
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 1281-1295
-
-
Sharp, P.1
Li, W.2
-
30
-
-
0023046874
-
Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
-
Sharp P, Tuohy T, Mosurski K (1986) Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res 14:5125-5143
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 5125-5143
-
-
Sharp, P.1
Tuohy, T.2
Mosurski, K.3
-
31
-
-
0023915972
-
Selective differences among translation termination codons
-
Sharp PM, Bulmer M (1988) Selective differences among translation termination codons. Gene 63:141-145
-
(1988)
Gene
, vol.63
, pp. 141-145
-
-
Sharp, P.M.1
Bulmer, M.2
-
32
-
-
0037252616
-
The EMBL Nucleotide Sequence Database: Major new developments
-
Stoesser G, Baker W, van den Broek A, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, Nardone F, Stoehr P, Tuli MA, Tzouvara K, Vaughan R (2003) The EMBL Nucleotide Sequence Database: major new developments. Nucleic Acids Res 31:17-22
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 17-22
-
-
Stoesser, G.1
Baker, W.2
Van Den Broek, A.3
Garcia-Pastor, M.4
Kanz, C.5
Kulikova, T.6
Leinonen, R.7
Lin, Q.8
Lombard, V.9
Lopez, R.10
Mancuso, R.11
Nardone, F.12
Stoehr, P.13
Tuli, M.A.14
Tzouvara, K.15
Vaughan, R.16
-
33
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
USA
-
Su AI, Cooke MP, Ching KA, Hakak Y, Walker JR, Wiltshire T, Orth AP, Vega RG, Sapinoso LM, Moqrich A, Patapoutian A, Hampton GM, Schultz PG, Hogenesch JB (2002) Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci USA 99:4465-4470
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 4465-4470
-
-
Su, A.I.1
Cooke, M.P.2
Ching, K.A.3
Hakak, Y.4
Walker, J.R.5
Wiltshire, T.6
Orth, A.P.7
Vega, R.G.8
Sapinoso, L.M.9
Moqrich, A.10
Patapoutian, A.11
Hampton, G.M.12
Schultz, P.G.13
Hogenesch, J.B.14
-
34
-
-
0034736510
-
DNA G + C content of the third codon position and codon usage biases of human genes
-
Sueoka N, Kawanishi Y (2000) DNA G + C content of the third codon position and codon usage biases of human genes. Gene 261:53-62
-
(2000)
Gene
, vol.261
, pp. 53-62
-
-
Sueoka, N.1
Kawanishi, Y.2
-
35
-
-
0030432484
-
The translational stop signal: Codon with a context, or extended factor recognition element?
-
Tate WP, Poole ES, Dalphin ME, Major LL, Crawford DJG, Mannering SA (1996) The translational stop signal: Codon with a context, or extended factor recognition element? Biochimie 78:945-952
-
(1996)
Biochimie
, vol.78
, pp. 945-952
-
-
Tate, W.P.1
Poole, E.S.2
Dalphin, M.E.3
Major, L.L.4
Crawford, D.J.G.5
Mannering, S.A.6
-
36
-
-
0345411919
-
Isochores and tissue-specificity
-
Vinogradov AE (2003) Isochores and tissue-specificity. Nucleic Acids Res 31:5212-5220
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5212-5220
-
-
Vinogradov, A.E.1
|