-
3
-
-
0014690698
-
Gene regulation for higher cells: A theory
-
Britten RJ, Davidson EH: Gene regulation for higher cells: a theory. Science 1969, 165(891):349-357.
-
(1969)
Science
, vol.165
, Issue.891
, pp. 349-357
-
-
Britten, R.J.1
Davidson, E.H.2
-
4
-
-
0028295301
-
The molecular basis of skeletal muscle differentiation
-
Dias P, Dilling M, Houghton P: The molecular basis of skeletal muscle differentiation. Semin Diagn Pathol 1994, 11(1):3-14.
-
(1994)
Semin. Diagn. Pathol.
, vol.11
, Issue.1
, pp. 3-14
-
-
Dias, P.1
Dilling, M.2
Houghton, P.3
-
5
-
-
3042588831
-
Molecular regulation of vascular smooth muscle cell differentiation in development and disease
-
Owens GK, Kumar MS, Wamhoff BR: Molecular regulation of vascular smooth muscle cell differentiation in development and disease. Physiol Rev 2004, 84(3):767-801.
-
(2004)
Physiol. Rev.
, vol.84
, Issue.3
, pp. 767-801
-
-
Owens, G.K.1
Kumar, M.S.2
Wamhoff, B.R.3
-
6
-
-
0036608009
-
Control of cardiac development by an evolutionarily conserved transcriptional network
-
Cripps RM, Olson EN: Control of cardiac development by an evolutionarily conserved transcriptional network. Dev Biol 2002, 246(1):14-28.
-
(2002)
Dev. Biol.
, vol.246
, Issue.1
, pp. 14-28
-
-
Cripps, R.M.1
Olson, E.N.2
-
7
-
-
0030884619
-
Modular regulation of muscle gene transcription: A mechanism for muscle cell diversity
-
Firulli AB, Olson EN: Modular regulation of muscle gene transcription: a mechanism for muscle cell diversity. Trends Genet 1997, 13(9):364-369.
-
(1997)
Trends Genet.
, vol.13
, Issue.9
, pp. 364-369
-
-
Firulli, A.B.1
Olson, E.N.2
-
8
-
-
0036792665
-
Control of megakaryocyte-specific gene expression by GATA-1 and FOG-1: Role of Ets transcription factors
-
Wang X, Crispino JD, Letting DL, Nakazawa M, Poncz M, Blobel GA: Control of megakaryocyte-specific gene expression by GATA-1 and FOG-1: role of Ets transcription factors. Embo J 2002, 21(19):5225-5234.
-
(2002)
Embo. J.
, vol.21
, Issue.19
, pp. 5225-5234
-
-
Wang, X.1
Crispino, J.D.2
Letting, D.L.3
Nakazawa, M.4
Poncz, M.5
Blobel, G.A.6
-
9
-
-
0031303723
-
Transcriptional control of K5, K6, K14, and K17 keratin genes by AP-1 and NF-kappaB family members
-
Ma S, Rao L, Freedberg IM, Blumenberg M: Transcriptional control of K5, K6, K14, and K17 keratin genes by AP-1 and NF-kappaB family members. Gene Expr 1997, 6(6):361-370.
-
(1997)
Gene Expr.
, vol.6
, Issue.6
, pp. 361-370
-
-
Ma, S.1
Rao, L.2
Freedberg, I.M.3
Blumenberg, M.4
-
10
-
-
0030986188
-
The hardwiring of development: Organization and function of genomic regulatory systems
-
Arnone MI, Davidson EH: The hardwiring of development: organization and function of genomic regulatory systems. Development 1997, 124(10):1851-1864.
-
(1997)
Development
, vol.124
, Issue.10
, pp. 1851-1864
-
-
Arnone, M.I.1
Davidson, E.H.2
-
11
-
-
0442276480
-
Transcriptional control of B cell development and function
-
Bartholdy B, Matthias P: Transcriptional control of B cell development and function. Gene 2004, 327(1):1-23.
-
(2004)
Gene
, vol.327
, Issue.1
, pp. 1-23
-
-
Bartholdy, B.1
Matthias, P.2
-
12
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N: Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet 2003, 34(2):166-176.
-
(2003)
Nat. Genet.
, vol.34
, Issue.2
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
13
-
-
4644323881
-
Transcriptional regulation of protein complexes in yeast
-
Simonis N, van Helden J, Cohen GN, Wodak SJ: Transcriptional regulation of protein complexes in yeast. Genome Biol 2004, 5(5):R33.
-
(2004)
Genome Biol.
, vol.5
, Issue.5
-
-
Simonis, N.1
van Helden, J.2
Cohen, G.N.3
Wodak, S.J.4
-
14
-
-
0032562789
-
Identification of regulatory regions which confer muscle-specific gene expression
-
Wasserman WW, Fickett JW: Identification of regulatory regions which confer muscle-specific gene expression. J Mol Biol 1998, 278(1):167-181.
-
(1998)
J. Mol. Biol.
, vol.278
, Issue.1
, pp. 167-181
-
-
Wasserman, W.W.1
Fickett, J.W.2
-
15
-
-
0034819935
-
A predictive model for regulatory sequences directing liver-specific transcription
-
Krivan W, Wasserman WW: A predictive model for regulatory sequences directing liver-specific transcription. Genome Res 2001, 11(9):1559-1566.
-
(2001)
Genome Res.
, vol.11
, Issue.9
, pp. 1559-1566
-
-
Krivan, W.1
Wasserman, W.W.2
-
16
-
-
0033775978
-
Human-mouse genome comparisons to locate regulatory sites
-
Wasserman WW, Palumbo M, Thompson W, Fickett JW, Lawrence CE: Human-mouse genome comparisons to locate regulatory sites. Nat Genet 2000, 26(2):225-228.
-
(2000)
Nat. Genet.
, vol.26
, Issue.2
, pp. 225-228
-
-
Wasserman, W.W.1
Palumbo, M.2
Thompson, W.3
Fickett, J.W.4
Lawrence, C.E.5
-
17
-
-
0037443976
-
Toucan: Deciphering the cis-regulatory logic of coregulated genes
-
Aerts S, Thijs G, Coessens B, Staes M, Moreau Y, De Moor B: Toucan: deciphering the cis-regulatory logic of coregulated genes. Nucleic Acids Res 2003, 31(6):1753-1764.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.6
, pp. 1753-1764
-
-
Aerts, S.1
Thijs, G.2
Coessens, B.3
Staes, M.4
Moreau, Y.5
De Moor, B.6
-
18
-
-
0031310760
-
Specific modelling of regulatory units in DNA sequences
-
Frech K, Werner T: Specific modelling of regulatory units in DNA sequences. Pac Symp Biocomput 1997:151-162.
-
(1997)
Pac. Symp. Biocomput.
, pp. 151-162
-
-
Frech, K.1
Werner, T.2
-
19
-
-
9144259164
-
Ensembl 2004
-
Database issue
-
Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T: Ensembl 2004. Nucleic Acids Res 2004, 32 Database issue:D468-70.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Birney, E.1
Andrews, D.2
Bevan, P.3
Caccamo, M.4
Cameron, G.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cox, T.9
Cuff, J.10
Curwen, V.11
Cutts, T.12
Down, T.13
Durbin, R.14
Eyras, E.15
Fernandez-Suarez, X.M.16
Gane, P.17
Gibbins, B.18
Gilbert, J.19
Hammond, M.20
Hotz, H.21
Iyer, V.22
Kahari, A.23
Jekosch, K.24
Kasprzyk, A.25
Keefe, D.26
Keenan, S.27
Lehvaslaiho, H.28
McVicker, G.29
Melsopp, C.30
Meidl, P.31
Mongin, E.32
Pettett, R.33
Potter, S.34
Proctor, G.35
Rae, M.36
Searle, S.37
Slater, G.38
Smedley, D.39
Smith, J.40
Spooner, W.41
Stabenau, A.42
Stalker, J.43
Storey, R.44
Ureta-Vidal, A.45
Woodwark, C.46
Clamp, M.47
Hubbard, T.48
more..
-
20
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, Kasprzyk A, Lehvaslaiho H, Lijnzaad P, Melsopp C, Mongin E, Pettett R, Pocock M, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Clamp M: The Ensembl genome database project. Nucleic Acids Res 2002, 30(1):38-41.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.1
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
Durbin, R.11
Eyras, E.12
Gilbert, J.13
Hammond, M.14
Huminiecki, L.15
Kasprzyk, A.16
Lehvaslaiho, H.17
Lijnzaad, P.18
Melsopp, C.19
Mongin, E.20
Pettett, R.21
Pocock, M.22
Potter, S.23
Rust, A.24
Schmidt, E.25
Searle, S.26
Slater, G.27
Smith, J.28
Spooner, W.29
Stabenau, A.30
Stalker, J.31
Stupka, E.32
Ureta-Vidal, A.33
Vastrik, I.34
Clamp, M.35
more..
-
21
-
-
0042024902
-
Prediction of cell type-specific gene modules: Identification and initial characterization of a core set of smooth muscle-specific genes
-
Nelander S, Mostad P, Lindahl P: Prediction of cell type-specific gene modules: identification and initial characterization of a core set of smooth muscle-specific genes. Genome Res 2003, 13(8):1838-1854.
-
(2003)
Genome Res.
, vol.13
, Issue.8
, pp. 1838-1854
-
-
Nelander, S.1
Mostad, P.2
Lindahl, P.3
-
22
-
-
3042514191
-
Coexpression analysis of human genes across many microarray data sets
-
Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P: Coexpression analysis of human genes across many microarray data sets. Genome Res 2004, 14(6):1085-1094.
-
(2004)
Genome Res.
, vol.14
, Issue.6
, pp. 1085-1094
-
-
Lee, H.K.1
Hsu, A.K.2
Sajdak, J.3
Qin, J.4
Pavlidis, P.5
-
23
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB: A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A 2004, 101(16):6062-6067.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, Issue.16
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
Cooke, M.P.11
Walker, J.R.12
Hogenesch, J.B.13
-
24
-
-
0037245913
-
BIND: The Biomolecular Interaction Network Database
-
Bader GD, Betel D, Hogue CW: BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res 2003, 31(1):248-250.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.1
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.3
-
25
-
-
0347125328
-
JASPAR: An open-access database for eukaryotic transcription factor binding profiles
-
(Database issue)
-
Sandelin A, Alkema W, Engstrom P, Wasserman WW, Lenhard B: JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res 2004, 32 (Database issue):D91-4.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Sandelin, A.1
Alkema, W.2
Engstrom, P.3
Wasserman, W.W.4
Lenhard, B.5
-
26
-
-
0033976586
-
TRANSFAC: An integrated system for gene expression regulation
-
Wingender E, Chen X, Hehl R, Karas H, Liebich I, Matys V, Meinhardt T, Pruss M, Reuter I, Schacherer F: TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res 2000, 28(1):316-319.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.1
, pp. 316-319
-
-
Wingender, E.1
Chen, X.2
Hehl, R.3
Karas, H.4
Liebich, I.5
Matys, V.6
Meinhardt, T.7
Pruss, M.8
Reuter, I.9
Schacherer, F.10
-
27
-
-
0034746517
-
Analysis of SM22alpha-deficient mice reveals unanticipated insights into smooth muscle cell differentiation and function
-
Zhang JC, Kim S, Helmke BP, Yu WW, Du KL, Lu MM, Strobeck M, Yu Q, Parmacek MS: Analysis of SM22alpha-deficient mice reveals unanticipated insights into smooth muscle cell differentiation and function. Mol Cell Biol 2001, 21(4):1336-1344.
-
(2001)
Mol. Cell Biol.
, vol.21
, Issue.4
, pp. 1336-1344
-
-
Zhang, J.C.1
Kim, S.2
Helmke, B.P.3
Yu, W.W.4
Du, K.L.5
Lu, M.M.6
Strobeck, M.7
Yu, Q.8
Parmacek, M.S.9
-
28
-
-
0031877016
-
Combining evidence using p-values. application to sequence homology searches
-
Bailey TL, Gribskov M: Combining evidence using p-values. application to sequence homology searches. Bioinformatics 1998, 14:48-54.
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
29
-
-
0027229972
-
Cloning and functional characterization of early B-cell factor, a regulator of lymphocyte-specific gene expression
-
Hagman J, Belanger C, Travis A, Turck CW, Grosschedl R: Cloning and functional characterization of early B-cell factor, a regulator of lymphocyte-specific gene expression. Genes Dev 1993, 7(5):760-773.
-
(1993)
Genes Dev.
, vol.7
, Issue.5
, pp. 760-773
-
-
Hagman, J.1
Belanger, C.2
Travis, A.3
Turck, C.W.4
Grosschedl, R.5
-
31
-
-
14844313962
-
Functional inference from non-random distributions of conserved predicted transcription factor binding sites
-
Dieterich C, Rahmann S, Vingron M: Functional inference from non-random distributions of conserved predicted transcription factor binding sites. Bioinformatics 2004, 20 Suppl 1:I109-I115.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Dieterich, C.1
Rahmann, S.2
Vingron, M.3
-
32
-
-
10744227070
-
Control of pancreas and liver gene expression by HNF transcription factors
-
Odom DT, Zizlsperger N, Gordon DB, Bell GW, Rinaldi NJ, Murray HL, Volkert TL, Schreiber J, Rolfe PA, Gifford DK, Fraenkel E, Bell GI, Young RA: Control of pancreas and liver gene expression by HNF transcription factors. Science 2004, 303(5662):1378-1381.
-
(2004)
Science
, vol.303
, Issue.5662
, pp. 1378-1381
-
-
Odom, D.T.1
Zizlsperger, N.2
Gordon, D.B.3
Bell, G.W.4
Rinaldi, N.J.5
Murray, H.L.6
Volkert, T.L.7
Schreiber, J.8
Rolfe, P.A.9
Gifford, D.K.10
Fraenkel, E.11
Bell, G.I.12
Young, R.A.13
-
33
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C: Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 1994, 2:38-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 36-38
-
-
Bailey, T.L.1
Elkan, C.2
-
34
-
-
6344272894
-
B lymphocyte-induced maturation protein (Blimp)-1, IFN regulatory factor (IRF)-1, and IRF-2 can bind to the same regulatory sites
-
Kuo TC, Calame KL: B lymphocyte-induced maturation protein (Blimp)-1, IFN regulatory factor (IRF)-1, and IRF-2 can bind to the same regulatory sites. J Immunol 2004, 173(9):5556-5563.
-
(2004)
J. Immunol.
, vol.173
, Issue.9
, pp. 5556-5563
-
-
Kuo, T.C.1
Calame, K.L.2
-
35
-
-
8844254691
-
Impaired myelopoiesis in mice devoid of interferon regulatory factor 1
-
Testa U, Stellacci E, Pelosi E, Sestili P, Venditti M, Orsatti R, Fragale A, Petrucci E, Pasquini L, Belardelli F, Gabriele L, Battistini A: Impaired myelopoiesis in mice devoid of interferon regulatory factor 1. Leukemia 2004, 18(11):1864-1871.
-
(2004)
Leukemia
, vol.18
, Issue.11
, pp. 1864-1871
-
-
Testa, U.1
Stellacci, E.2
Pelosi, E.3
Sestili, P.4
Venditti, M.5
Orsatti, R.6
Fragale, A.7
Petrucci, E.8
Pasquini, L.9
Belardelli, F.10
Gabriele, L.11
Battistini, A.12
-
36
-
-
4544342570
-
Nuclear factor-kappaB: The enemy within
-
Aggarwal BB: Nuclear factor-kappaB: the enemy within. Cancer Cell 2004, 6(3):203-208.
-
(2004)
Cancer Cell
, vol.6
, Issue.3
, pp. 203-208
-
-
Aggarwal, B.B.1
-
37
-
-
0034684615
-
Mouse models in the study of the Ets family of transcription factors
-
Bartel FO, Higuchi T, Spyropoulos DD: Mouse models in the study of the Ets family of transcription factors. Oncogene 2000, 19(55):6443-6454.
-
(2000)
Oncogene
, vol.19
, Issue.55
, pp. 6443-6454
-
-
Bartel, F.O.1
Higuchi, T.2
Spyropoulos, D.D.3
-
38
-
-
0032586040
-
Basic Kruppel-like factor functions within a network of interacting haematopoietic transcription factors
-
Turner J, Crossley M: Basic Kruppel-like factor functions within a network of interacting haematopoietic transcription factors. Int J Biochem Cell Biol 1999, 31(10):1169-1174.
-
(1999)
Int. J. Biochem. Cell Biol.
, vol.31
, Issue.10
, pp. 1169-1174
-
-
Turner, J.1
Crossley, M.2
-
39
-
-
1242319300
-
B cell development and immunoglobulin transcription in Oct-1-deficient mice
-
Wang VE, Tantin D, Chen J, Sharp PA: B cell development and immunoglobulin transcription in Oct-1-deficient mice. Proc Natl Acad Sci U S A 2004, 101(7):2005-2010.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, Issue.7
, pp. 2005-2010
-
-
Wang, V.E.1
Tantin, D.2
Chen, J.3
Sharp, P.A.4
-
40
-
-
5444264003
-
Biological control through regulated transcriptional coactivators
-
Spiegelman BM, Heinrich R: Biological control through regulated transcriptional coactivators. Cell 2004, 119(2):157-167.
-
(2004)
Cell
, vol.119
, Issue.2
, pp. 157-167
-
-
Spiegelman, B.M.1
Heinrich, R.2
-
41
-
-
0037418735
-
Molecular cloning and expression of Sox17 in gonads during sex reversal in the rice field eel, a teleost fish with a characteristic of natural sex transformation
-
Wang R, Cheng H, Xia L, Guo Y, Huang X, Zhou R: Molecular cloning and expression of Sox17 in gonads during sex reversal in the rice field eel, a teleost fish with a characteristic of natural sex transformation. Biochem Biophys Res Commun 2003, 303(2):452-457.
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.303
, Issue.2
, pp. 452-457
-
-
Wang, R.1
Cheng, H.2
Xia, L.3
Guo, Y.4
Huang, X.5
Zhou, R.6
-
42
-
-
0036481735
-
Molecular cloning and characterization of human SOX17
-
Katoh M: Molecular cloning and characterization of human SOX17. Int J Mol Med 2002, 9(2):153-157.
-
(2002)
Int. J. Mol. Med.
, vol.9
, Issue.2
, pp. 153-157
-
-
Katoh, M.1
-
43
-
-
6344249123
-
RFX2 is a potential transcriptional regulatory factor for histone H1t and other genes expressed during the meiotic phase of spermatogenesis
-
Horvath GC, Kistler WS, Kistler MK: RFX2 is a potential transcriptional regulatory factor for histone H1t and other genes expressed during the meiotic phase of spermatogenesis. Biol Reprod 2004, 71(5):1551-1559.
-
(2004)
Biol. Reprod.
, vol.71
, Issue.5
, pp. 1551-1559
-
-
Horvath, G.C.1
Kistler, W.S.2
Kistler, M.K.3
-
44
-
-
2942572926
-
Quantifying the relationship between co-expression, co-regulation and gene function
-
Allocco DJ, Kohane IS, Butte AJ: Quantifying the relationship between co-expression, co-regulation and gene function. BMC Bioinformatics 2004, 5(1):18.
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
, pp. 18
-
-
Allocco, D.J.1
Kohane, I.S.2
Butte, A.J.3
-
45
-
-
0034283071
-
Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis
-
Ishii M, Hashimoto S, Tsutsumi S, Wada Y, Matsushima K, Kodama T, Aburatani H: Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis. Genomics 2000, 68(2):136-143.
-
(2000)
Genomics
, vol.68
, Issue.2
, pp. 136-143
-
-
Ishii, M.1
Hashimoto, S.2
Tsutsumi, S.3
Wada, Y.4
Matsushima, K.5
Kodama, T.6
Aburatani, H.7
-
46
-
-
0344873702
-
Comparison of oligonucleotide-microarray and serial analysis of gene expression (SAGE) in transcript profiling analysis of megakaryocytes derived from CD34+ cells
-
Kim HL: Comparison of oligonucleotide-microarray and serial analysis of gene expression (SAGE) in transcript profiling analysis of megakaryocytes derived from CD34+ cells. Exp Mol Med 2003, 35(5):460-466.
-
(2003)
Exp. Mol. Med.
, vol.35
, Issue.5
, pp. 460-466
-
-
Kim, H.L.1
-
47
-
-
0036211063
-
Analysis of matched mRNA measurements from two different microarray technologies
-
Kuo WP, Jenssen TK, Butte AJ, Ohno-Machado L, Kohane IS: Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 2002, 18(3):405-412.
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 405-412
-
-
Kuo, W.P.1
Jenssen, T.K.2
Butte, A.J.3
Ohno-Machado, L.4
Kohane, I.S.5
-
48
-
-
0032437107
-
Transcriptional control of muscle development by myocyte enhancer factor-2 (MEF2) proteins
-
Black BL, Olson EN: Transcriptional control of muscle development by myocyte enhancer factor-2 (MEF2) proteins. Annu Rev Cell Dev Biol 1998, 14:167-196.
-
(1998)
Annu. Rev. Cell Dev. Biol.
, vol.14
, pp. 167-196
-
-
Black, B.L.1
Olson, E.N.2
-
49
-
-
0030688065
-
Subunit composition determines E2F DNA-binding site specificity
-
Tao Y, Kassatly RF, Cress WD, Horowitz JM: Subunit composition determines E2F DNA-binding site specificity. Mol Cell Biol 1997, 17(12):6994-7007.
-
(1997)
Mol. Cell Biol.
, vol.17
, Issue.12
, pp. 6994-7007
-
-
Tao, Y.1
Kassatly, R.F.2
Cress, W.D.3
Horowitz, J.M.4
-
50
-
-
11244276992
-
The E2F family: Specific functions and overlapping interests
-
Attwooll C, Denchi EL, Helin K: The E2F family: specific functions and overlapping interests. Embo J 2004.
-
(2004)
Embo J.
-
-
Attwooll, C.1
Denchi, E.L.2
Helin, K.3
-
51
-
-
3242889405
-
CONFAC: Automated application of comparative genomic promoter analysis to DNA microarray datasets
-
(Web Server issue)
-
Karanam S, Moreno CS: CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets. Nucleic Acids Res 2004, 32(Web Server issue):W475-84.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Karanam, S.1
Moreno, C.S.2
-
52
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215(3):403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
53
-
-
0037398368
-
LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
-
Brudno M, Do CB, Cooper GM, Kim MF, Davydov E, Green ED, Sidow A, Batzoglou S: LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res 2003, 13(4):721-731.
-
(2003)
Genome Res.
, vol.13
, Issue.4
, pp. 721-731
-
-
Brudno, M.1
Do, C.B.2
Cooper, G.M.3
Kim, M.F.4
Davydov, E.5
Green, E.D.6
Sidow, A.7
Batzoglou, S.8
-
54
-
-
0000825481
-
A Statistical Method for Evaluating Systematic Relationships
-
Sokal RR, Michener CD: A Statistical Method for Evaluating Systematic Relationships. Univ Kans Sci Bull 1958, 38:1409-1438.
-
(1958)
Univ. Kans. Sci. Bull.
, vol.38
, pp. 1409-1438
-
-
Sokal, R.R.1
Michener, C.D.2
-
55
-
-
0028321942
-
Recognition of regulatory regions in genomic sequences
-
Wingender E: Recognition of regulatory regions in genomic sequences. J Biotechnol 1994, 35(2-3):273-280.
-
(1994)
J. Biotechnol.
, vol.35
, Issue.2-3
, pp. 273-280
-
-
Wingender, E.1
-
56
-
-
12744255763
-
Similarity of position frequency matrices for transcription factor binding sites
-
Schones DE, Sumazin P, Zhang MQ: Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics 2004.
-
(2004)
Bioinformatics
-
-
Schones, D.E.1
Sumazin, P.2
Zhang, M.Q.3
-
57
-
-
0030784438
-
An artificial intelligence approach to motif discovery in protein sequences: Application to steriod dehydrogenases
-
Bailey TL, Baker ME, Elkan CP: An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases. J Steroid Biochem Mol Biol 1997, 62(1):29-44.
-
(1997)
J. Steroid. Biochem. Mol. Biol.
, vol.62
, Issue.1
, pp. 29-44
-
-
Bailey, T.L.1
Baker, M.E.2
Elkan, C.P.3
-
58
-
-
0024380087
-
Rapid detection of octamer binding proteins with "mini-extracts", prepared from a small number of cells
-
Schreiber E, Matthias P, Müller M, Schaffner W: Rapid detection of octamer binding proteins with "mini-extracts", prepared from a small number of cells. Nucleic Acids Res 1989, 17:6419.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 6419
-
-
Schreiber, E.1
Matthias, P.2
Müller, M.3
Schaffner, W.4
-
59
-
-
0034090310
-
Mammalian hepatocyte differentiation requires the transcription factor HNF-4alpha
-
Li J, Ning G, Duncan SA: Mammalian hepatocyte differentiation requires the transcription factor HNF-4alpha. Genes Dev 2000, 14(4):464-474.
-
(2000)
Genes Dev.
, vol.14
, Issue.4
, pp. 464-474
-
-
Li, J.1
Ning, G.2
Duncan, S.A.3
-
60
-
-
0141961741
-
Expression of HNFs and C/EBP alpha is correlated with immunocytochemical differentiation of cell lines derived from human hepatocellular carcinomas, hepatoblastomas and immortalized hepatocytes
-
Ishiyama T, Kano J, Minami Y, Iijima T, Morishita Y, Noguchi M: Expression of HNFs and C/EBP alpha is correlated with immunocytochemical differentiation of cell lines derived from human hepatocellular carcinomas, hepatoblastomas and immortalized hepatocytes. Cancer Sci 2003, 94(9):757-763.
-
(2003)
Cancer Sci.
, vol.94
, Issue.9
, pp. 757-763
-
-
Ishiyama, T.1
Kano, J.2
Minami, Y.3
Iijima, T.4
Morishita, Y.5
Noguchi, M.6
-
61
-
-
0036358745
-
HNF-1 alpha: Have bile acid transport genes found their "master"?
-
Arrese M, Karpen SJ: HNF-1 alpha: have bile acid transport genes found their "master"? J Hepatol 2002, 36(1):142-145.
-
(2002)
J. Hepatol.
, vol.36
, Issue.1
, pp. 142-145
-
-
Arrese, M.1
Karpen, S.J.2
-
62
-
-
3042829784
-
Leukaemia - A developmental perspective
-
Izraeli S: Leukaemia - a developmental perspective. Br J Haematol 2004, 126(1):3-10.
-
(2004)
Br. J. Haematol.
, vol.126
, Issue.1
, pp. 3-10
-
-
Izraeli, S.1
-
63
-
-
0034748923
-
PU.1/Spi-B regulation of c-rel is essential for mature B cell survival
-
Hu CJ, Rao S, Ramirez-Bergeron DL, Garrett-Sinha LA, Gerondakis S, Clark MR, Simon MC: PU.1/Spi-B regulation of c-rel is essential for mature B cell survival. Immunity 2001, 15(4):545-555.
-
(2001)
Immunity
, vol.15
, Issue.4
, pp. 545-555
-
-
Hu, C.J.1
Rao, S.2
Ramirez-Bergeron, D.L.3
Garrett-Sinha, L.A.4
Gerondakis, S.5
Clark, M.R.6
Simon, M.C.7
-
64
-
-
0035229023
-
Transcriptional programs regulating vascular smooth muscle cell development and differentiation
-
Parmacek MS: Transcriptional programs regulating vascular smooth muscle cell development and differentiation. Curr Top Dev Biol 2001, 51:69-89.
-
(2001)
Curr. Top Dev. Biol.
, vol.51
, pp. 69-89
-
-
Parmacek, M.S.1
-
65
-
-
0031694917
-
NRSF/REST is required in vivo for repression of multiple neuronal target genes during embryogenesis
-
Chen ZF, Paquette AJ, Anderson DJ: NRSF/REST is required in vivo for repression of multiple neuronal target genes during embryogenesis. Nat Genet 1998, 20(2):136-142.
-
(1998)
Nat. Genet.
, vol.20
, Issue.2
, pp. 136-142
-
-
Chen, Z.F.1
Paquette, A.J.2
Anderson, D.J.3
-
66
-
-
0141446024
-
Liver peroxisome proliferator-activated receptor gamma contributes to hepatic steatosis, triglyceride clearance, and regulation of body fat mass
-
Gavrilova O, Haluzik M, Matsusue K, Cutson JJ, Johnson L, Dietz KR, Nicol CJ, Vinson C, Gonzalez FJ, Reitman ML: Liver peroxisome proliferator-activated receptor gamma contributes to hepatic steatosis, triglyceride clearance, and regulation of body fat mass. J Biol Chem 2003, 278(36):34268-34276.
-
(2003)
J. Biol. Chem.
, vol.278
, Issue.36
, pp. 34268-34276
-
-
Gavrilova, O.1
Haluzik, M.2
Matsusue, K.3
Cutson, J.J.4
Johnson, L.5
Dietz, K.R.6
Nicol, C.J.7
Vinson, C.8
Gonzalez, F.J.9
Reitman, M.L.10
-
67
-
-
0043234719
-
ARP-1/COUP-TF II determines hepatoma phenotype by acting as both a transcriptional repressor of microsomal triglyceride transfer protein and an inducer of CYP7A1
-
Kang S, Spann NJ, Hui TY, Davis RA: ARP-1/COUP-TF II determines hepatoma phenotype by acting as both a transcriptional repressor of microsomal triglyceride transfer protein and an inducer of CYP7A1. J Biol Chem 2003, 278(33):30478-30486.
-
(2003)
J. Biol. Chem.
, vol.278
, Issue.33
, pp. 30478-30486
-
-
Kang, S.1
Spann, N.J.2
Hui, T.Y.3
Davis, R.A.4
-
68
-
-
0142059951
-
XBP-1 regulates a subset of endoplasmic reticulum resident chaperone genes in the unfolded protein response
-
Lee AH, Iwakoshi NN, Glimcher LH: XBP-1 regulates a subset of endoplasmic reticulum resident chaperone genes in the unfolded protein response. Mol Cell Biol 2003, 23(21):7448-7459.
-
(2003)
Mol. Cell Biol.
, vol.23
, Issue.21
, pp. 7448-7459
-
-
Lee, A.H.1
Iwakoshi, N.N.2
Glimcher, L.H.3
-
69
-
-
0034892164
-
Mutations in the human genes encoding the transcription factors of the hepatocyte nuclear factor (HNF)1 and HNF4 families: Functional and pathological consequences
-
Ryffel GU: Mutations in the human genes encoding the transcription factors of the hepatocyte nuclear factor (HNF)1 and HNF4 families: functional and pathological consequences. J Mol Endocrinol 2001, 27(1):11-29.
-
(2001)
J. Mol. Endocrinol.
, vol.27
, Issue.1
, pp. 11-29
-
-
Ryffel, G.U.1
-
70
-
-
0030695445
-
The maturity-onset diabetes of the young (MODY1) transcription factor HNF4alpha regulates expression of genes required for glucose transport and metabolism
-
Stoffel M, Duncan SA: The maturity-onset diabetes of the young (MODY1) transcription factor HNF4alpha regulates expression of genes required for glucose transport and metabolism. Proc Natl Acad Sci U S A 1997, 94(24):13209-13214.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, Issue.24
, pp. 13209-13214
-
-
Stoffel, M.1
Duncan, S.A.2
|