메뉴 건너뛰기




Volumn 6, Issue , 2005, Pages

Gene expression analysis reveals that histone deacetylation sites may serve as partitions of chromatin gene expression domains

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; TRANSCRIPTION FACTOR;

EID: 25444458326     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-6-44     Document Type: Article
Times cited : (7)

References (27)
  • 1
    • 0037072601 scopus 로고    scopus 로고
    • Molecular biology. Chromatin higher order folding - Wrapping up transcription
    • Horn PJ, Peterson CL: Molecular biology. Chromatin higher order folding - wrapping up transcription. Science 2002, 297(5588):1824-1827.
    • (2002) Science , vol.297 , Issue.5588 , pp. 1824-1827
    • Horn, P.J.1    Peterson, C.L.2
  • 2
    • 0031876314 scopus 로고    scopus 로고
    • Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III
    • Tse C, Sera T, Wolffe AP, Hansen JC: Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III. Mol Cell Biol 1998, 18(8):4629-4638.
    • (1998) Mol. Cell. Biol. , vol.18 , Issue.8 , pp. 4629-4638
    • Tse, C.1    Sera, T.2    Wolffe, A.P.3    Hansen, J.C.4
  • 3
    • 0027465862 scopus 로고
    • A positive role for histone acetylation in transcription factor access to nucleosomal DNA
    • Lee DY, Hayes JJ, Pruss D, Wolffe AP: A positive role for histone acetylation in transcription factor access to nucleosomal DNA. Cell 1993, 72(1):73-84.
    • (1993) Cell , vol.72 , Issue.1 , pp. 73-84
    • Lee, D.Y.1    Hayes, J.J.2    Pruss, D.3    Wolffe, A.P.4
  • 4
    • 0029985730 scopus 로고    scopus 로고
    • Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro
    • Vettese-Dadey M, Grant PA, Hebbes TR, Crane-Robinson C, Allis CD, Workman JL: Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro. Embo J 1996, 15(10):2508-2518.
    • (1996) Embo J. , vol.15 , Issue.10 , pp. 2508-2518
    • Vettese-Dadey, M.1    Grant, P.A.2    Hebbes, T.R.3    Crane-Robinson, C.4    Allis, C.D.5    Workman, J.L.6
  • 5
    • 0036850346 scopus 로고    scopus 로고
    • Deciphering the transcriptional histone acetylation code for a human gene
    • Agalioti T, Chen G, Thanos D: Deciphering the transcriptional histone acetylation code for a human gene. Cell 2002, 111(3):381-392.
    • (2002) Cell , vol.111 , Issue.3 , pp. 381-392
    • Agalioti, T.1    Chen, G.2    Thanos, D.3
  • 6
    • 0033519641 scopus 로고    scopus 로고
    • Structure and ligand of a histone acetyltransferase bromodomain
    • Dhalluin C, Carlson JE, Zeng L, He C, Aggarwal AK, Zhou MM: Structure and ligand of a histone acetyltransferase bromodomain. Nature 1999, 399(6735):491-496.
    • (1999) Nature , vol.399 , Issue.6735 , pp. 491-496
    • Dhalluin, C.1    Carlson, J.E.2    Zeng, L.3    He, C.4    Aggarwal, A.K.5    Zhou, M.M.6
  • 7
    • 0034717183 scopus 로고    scopus 로고
    • Structure and function of a human TAFII250 double bromodomain module
    • Jacobson RH, Ladurner AG, King DS, Tjian R: Structure and function of a human TAFII250 double bromodomain module. Science 2000, 288(5470):1422-1425.
    • (2000) Science , vol.288 , Issue.5470 , pp. 1422-1425
    • Jacobson, R.H.1    Ladurner, A.G.2    King, D.S.3    Tjian, R.4
  • 8
    • 0032499756 scopus 로고    scopus 로고
    • p21(WAF1) is required for butyrate-mediated growth inhibition of human colon cancer cells
    • Archer SY, Meng S, Shei A, Hodin RA: p21(WAF1) is required for butyrate-mediated growth inhibition of human colon cancer cells. Proc Natl Acad Sci U S A 1998, 95(12):6791-6796.
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , Issue.12 , pp. 6791-6796
    • Archer, S.Y.1    Meng, S.2    Shei, A.3    Hodin, R.A.4
  • 9
    • 0842277812 scopus 로고    scopus 로고
    • Histone deacetylase (HDAC) inhibitor activation of p21WAF1 involves changes in promoter-associated proteins, including HDAC1
    • Gui CY, Ngo L, Xu WS, Richon VM, Marks PA: Histone deacetylase (HDAC) inhibitor activation of p21WAF1 involves changes in promoter-associated proteins, including HDAC1. Proc Natl Acad Sci U S A 2004, 101(5):1241-1246.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , Issue.5 , pp. 1241-1246
    • Gui, C.Y.1    Ngo, L.2    Xu, W.S.3    Richon, V.M.4    Marks, P.A.5
  • 10
    • 0035341465 scopus 로고    scopus 로고
    • Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci
    • Litt MD, Simpson M, Recillas-Targa F, Prioleau MN, Felsenfeld G: Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci. Embo J 2001, 20(9):2224-2235.
    • (2001) Embo J. , vol.20 , Issue.9 , pp. 2224-2235
    • Litt, M.D.1    Simpson, M.2    Recillas-Targa, F.3    Prioleau, M.N.4    Felsenfeld, G.5
  • 12
    • 0033780450 scopus 로고    scopus 로고
    • A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
    • Cohen BA, Mitra RD, Hughes JD, Church GM: A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat Genet 2000, 26(2):183-186.
    • (2000) Nat. Genet. , vol.26 , Issue.2 , pp. 183-186
    • Cohen, B.A.1    Mitra, R.D.2    Hughes, J.D.3    Church, G.M.4
  • 13
    • 0036613754 scopus 로고    scopus 로고
    • Clustering of housekeeping genes provides a unified model of gene order in the human genome
    • Lercher MJ, Urrutia AO, Hurst LD: Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nat Genet 2002, 31(2):180-183.
    • (2002) Nat. Genet. , vol.31 , Issue.2 , pp. 180-183
    • Lercher, M.J.1    Urrutia, A.O.2    Hurst, L.D.3
  • 14
    • 0003328368 scopus 로고    scopus 로고
    • Evidence for large domains of similarly expressed genes in the Drosophila genome
    • Spellman PT, Rubin GM: Evidence for large domains of similarly expressed genes in the Drosophila genome. J Biol 2002, 1(1):5.
    • (2002) J. Biol. , vol.1 , Issue.1 , pp. 5
    • Spellman, P.T.1    Rubin, G.M.2
  • 15
    • 0031663782 scopus 로고    scopus 로고
    • Position effect in human genetic disease
    • Kleinjan DJ, van Heyningen V: Position effect in human genetic disease. Hum Mol Genet 1998, 7(10):1611-1618.
    • (1998) Hum. Mol. Genet. , vol.7 , Issue.10 , pp. 1611-1618
    • Kleinjan, D.J.1    van Heyningen, V.2
  • 16
    • 0029670543 scopus 로고    scopus 로고
    • Position effects and genetic disease
    • Milot E, Fraser P, Grosveld F: Position effects and genetic disease. Trends Genet 1996, 12(4):123-126.
    • (1996) Trends Genet. , vol.12 , Issue.4 , pp. 123-126
    • Milot, E.1    Fraser, P.2    Grosveld, F.3
  • 17
    • 0037131524 scopus 로고    scopus 로고
    • Setting the boundaries of chromatin domains and nuclear organization
    • Labrador M, Corces VG: Setting the boundaries of chromatin domains and nuclear organization. Cell 2002, 111(2):151-154.
    • (2002) Cell. , vol.111 , Issue.2 , pp. 151-154
    • Labrador, M.1    Corces, V.G.2
  • 18
    • 0036467996 scopus 로고    scopus 로고
    • Insulators: Many functions, many mechanisms
    • West AG, Gaszner M, Felsenfeld G: Insulators: many functions, many mechanisms. Genes Dev 2002, 16(3):271-288.
    • (2002) Genes Dev. , vol.16 , Issue.3 , pp. 271-288
    • West, A.G.1    Gaszner, M.2    Felsenfeld, G.3
  • 19
    • 25444516004 scopus 로고
    • City University of New York: Chromatin and chromosome structure
    • New York: Academic Press
    • Li HJ, Eckhardt RA, City University of New York: Chromatin and chromosome structure. New York: Academic Press; 1977.
    • (1977)
    • Li, H.J.1    Eckhardt, R.A.2
  • 20
    • 0041660936 scopus 로고    scopus 로고
    • Spurious spatial periodicity of co-expression in microarray data due to printing design
    • Balazsi G, Kay KA, Barabasi AL, Oltvai ZN: Spurious spatial periodicity of co-expression in microarray data due to printing design. Nucleic Acids Res 2003, 31(15):4425-4433.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.15 , pp. 4425-4433
    • Balazsi, G.1    Kay, K.A.2    Barabasi, A.L.3    Oltvai, Z.N.4
  • 21
    • 25444528984 scopus 로고    scopus 로고
    • Yeast Proteome Database
    • Yeast Proteome Database [http://proteome.incyte.com]
  • 23
    • 25444438758 scopus 로고    scopus 로고
    • SGD Gene Ontology Slim Mapper
    • SGD Gene Ontology Slim Mapper [http://db.yeastgenome.org/ cgi-bin/GO/goTermMapper]
  • 24
    • 0037123767 scopus 로고    scopus 로고
    • Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
    • Robyr D, Suka Y, Xenarios I, Kurdistani SK, Wang A, Suka N, Grunstein M: Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell 2002, 109(4):437-446.
    • (2002) Cell. , vol.109 , Issue.4 , pp. 437-446
    • Robyr, D.1    Suka, Y.2    Xenarios, I.3    Kurdistani, S.K.4    Wang, A.5    Suka, N.6    Grunstein, M.7
  • 25
    • 2942566528 scopus 로고    scopus 로고
    • Glucose and nitrogen regulate the switch from histone deacetylation to acetylation for expression of early meiosis-specific genes in budding yeast
    • Pnueli L, Edry I, Cohen M, Kassir Y: Glucose and nitrogen regulate the switch from histone deacetylation to acetylation for expression of early meiosis-specific genes in budding yeast. Mol Cell Biol 2004, 24(12):5197-5208.
    • (2004) Mol. Cell. Biol. , vol.24 , Issue.12 , pp. 5197-5208
    • Pnueli, L.1    Edry, I.2    Cohen, M.3    Kassir, Y.4
  • 27
    • 25444527212 scopus 로고    scopus 로고
    • NCBI Gene Expression Omnibus Database
    • NCBI Gene Expression Omnibus Database [http://www.ncbi.nlm.nih.gov/geo]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.