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Volumn 43, Issue 21, 2004, Pages 6709-6722

DNA sequence alterations affect nucleosome array formation of the chicken ovalbumin gene

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN; NUCLEAOSOME ARRAYS;

EID: 2542603194     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi049717f     Document Type: Article
Times cited : (5)

References (35)
  • 1
    • 0037432755 scopus 로고    scopus 로고
    • The human genome project: Lessons from large-scale biology
    • Collins, F. S., Morgan, M., and Patrinos, A. (2003) The human genome project: lessons from large-scale biology, Science 300, 286-290.
    • (2003) Science , vol.300 , pp. 286-290
    • Collins, F.S.1    Morgan, M.2    Patrinos, A.3
  • 2
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter, J. C., et al. (2001) The sequence of the human genome, Science 291, 1304-1351.
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1
  • 3
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome, Nature 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 4
    • 0037464588 scopus 로고    scopus 로고
    • A vision for the future of genomics research
    • Collins, F. S., Green, E. D., Guttmacher, A. E., and Guyer, M. S. (2003) A vision for the future of genomics research, Nature 422, 835-847.
    • (2003) Nature , vol.422 , pp. 835-847
    • Collins, F.S.1    Green, E.D.2    Guttmacher, A.E.3    Guyer, M.S.4
  • 5
    • 0037389917 scopus 로고    scopus 로고
    • A conversation with James D. Watson
    • Rennie, J. (2003) A conversation with James D. Watson, Sci. Am. 288, 66-69.
    • (2003) Sci. Am. , vol.288 , pp. 66-69
    • Rennie, J.1
  • 6
    • 0027517831 scopus 로고
    • A chromatin folding model that incorporates linker variability generates fibers resembling the native structures
    • Woodcock, C. L., Grigoryev, S. A., Horowitz, R. A., and Whitaker, N. (1993) A chromatin folding model that incorporates linker variability generates fibers resembling the native structures, Proc. Natl. Acad. Sci. U.S.A. 90, 9021-9025.
    • (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 9021-9025
    • Woodcock, C.L.1    Grigoryev, S.A.2    Horowitz, R.A.3    Whitaker, N.4
  • 8
    • 0029062023 scopus 로고
    • Chromatin organization re-evaluated
    • Woodcock, C. L., and Horowitz, R. A. (1995) Chromatin organization re-evaluated, Trends Cell Riol. 5, 272-277.
    • (1995) Trends Cell Riol. , vol.5 , pp. 272-277
    • Woodcock, C.L.1    Horowitz, R.A.2
  • 9
    • 0028935863 scopus 로고
    • Chromatin higher order structure: Chasing a mirage?
    • van Holde, K. E., and Zlatanova, J. (1995) Chromatin higher order structure: chasing a mirage?, J Biol. Chem. 270, 8373-8376.
    • (1995) J Biol. Chem. , vol.270 , pp. 8373-8376
    • Van Holde, K.E.1    Zlatanova, J.2
  • 10
    • 0035085098 scopus 로고    scopus 로고
    • Long-range nucleosome ordering is associated with gene silencing in Drosophila melanogaster pericentric heterochromatin
    • Sun, F.-L., Cuaycong, M. H., and Elgin, S. C. R. (2001) Long-range nucleosome ordering is associated with gene silencing in Drosophila melanogaster pericentric heterochromatin, Mol. Cell. Biol. 21, 2867-2879.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 2867-2879
    • Sun, F.-L.1    Cuaycong, M.H.2    Elgin, S.C.R.3
  • 11
    • 0003903126 scopus 로고
    • Springer-Verlag, New York
    • van Holde, K. E. (1989) Chromatin, Springer-Verlag, New York.
    • (1989) Chromatin
    • Van Holde, K.E.1
  • 12
    • 0031586220 scopus 로고    scopus 로고
    • DNA sequence encodes information for nucleosome array formation
    • Liu, K., and Stein, A. (1997) DNA sequence encodes information for nucleosome array formation, J. Mol. Biol. 207, 559-573.
    • (1997) J. Mol. Biol. , vol.207 , pp. 559-573
    • Liu, K.1    Stein, A.2
  • 13
    • 0036920409 scopus 로고    scopus 로고
    • Circle ligation of in vitro assembled chromatin indicates a highly flexible structure
    • Stein, A., Dalal, Y., and Fleury, T. J. (2002) Circle ligation of in vitro assembled chromatin indicates a highly flexible structure, Nucleic Acids Res. 20, 5103-5109.
    • (2002) Nucleic Acids Res. , vol.20 , pp. 5103-5109
    • Stein, A.1    Dalal, Y.2    Fleury, T.J.3
  • 14
    • 0032496272 scopus 로고    scopus 로고
    • Folding of chromatin in the presence of heterogeneous histone H1 binding to nucleosomes
    • Howe, L., Iskandar, M., and Ausio, J. (1998) Folding of chromatin in the presence of heterogeneous histone H1 binding to nucleosomes, J Biol. Chem. 273, 11625-11629.
    • (1998) J. Biol. Chem. , vol.273 , pp. 11625-11629
    • Howe, L.1    Iskandar, M.2    Ausio, J.3
  • 15
    • 0034881775 scopus 로고    scopus 로고
    • Linker histone function in chromatin: Dual mechanism of action
    • Georgel, P. T., and Hansen, J. C. (2001) Linker histone function in chromatin: dual mechanism of action, Biochem. Cell. Biol. 79, 313-316.
    • (2001) Biochem. Cell. Biol. , vol.79 , pp. 313-316
    • Georgel, P.T.1    Hansen, J.C.2
  • 17
    • 0036056999 scopus 로고    scopus 로고
    • The in vivo functions of ATP-dependent chromatin remodeling factors
    • Tsukiyama, T. (2002) The in vivo functions of ATP-dependent chromatin remodeling factors, Nat. Rev. 3, 422-429.
    • (2002) Nat. Rev. , vol.3 , pp. 422-429
    • Tsukiyama, T.1
  • 18
    • 0026754072 scopus 로고
    • Cell-free system for assembly of transcriptionally repressed chromatin from Drosophila embryos
    • Becker, P. B., and Wu, C. (1992) Cell-free system for assembly of transcriptionally repressed chromatin from Drosophila embryos, Mol. Cell. Biol. 12, 2241-2249.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 2241-2249
    • Becker, P.B.1    Wu, C.2
  • 19
    • 0029618706 scopus 로고
    • Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein
    • Bulger, M., Ito, T., Kamakaka, R. T., and Kadonaga, J. T. (1995) Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein, Proc. Natl. Acad. Sci. U.S.A. 92, 11726-11730.
    • (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 11726-11730
    • Bulger, M.1    Ito, T.2    Kamakaka, R.T.3    Kadonaga, J.T.4
  • 20
    • 0017617464 scopus 로고
    • Assembly of SV40 chromatin in a cell-free system from Xenopus eggs
    • Laskey, R. A., Mills, A. D., and Morris, N. N. (1977) Assembly of SV40 chromatin in a cell-free system from Xenopus eggs, Cell 10, 237-243.
    • (1977) Cell , vol.10 , pp. 237-243
    • Laskey, R.A.1    Mills, A.D.2    Morris, N.N.3
  • 21
    • 0024293492 scopus 로고
    • Assembly of spaced chromatin: Involvement of ATP and DNA topoisomerase activity
    • Almouzni, G., and Méchali, M. (1988) Assembly of spaced chromatin: involvement of ATP and DNA topoisomerase activity, EMBO J. 7, 4355-4365.
    • (1988) EMBO J. , vol.7 , pp. 4355-4365
    • Almouzni, G.1    Méchali, M.2
  • 22
    • 0021590954 scopus 로고
    • A model chromatin assembly system: Factors affecting nucleosome spacing
    • Stein, A., and Bina, M. (1984) A model chromatin assembly system: factors affecting nucleosome spacing, J. Mol. Biol. 178, 341-363.
    • (1984) J. Mol. Biol. , vol.178 , pp. 341-363
    • Stein, A.1    Bina, M.2
  • 23
    • 0030575777 scopus 로고    scopus 로고
    • Naturally occurring nucleosome positioning signals in human exons and introns
    • Baldi, P., Brunak, S., Chauvin, Y., and Krogh, A. (1996) Naturally occurring nucleosome positioning signals in human exons and introns, J. Mol. Biol. 263, 503-510.
    • (1996) J. Mol. Biol. , vol.263 , pp. 503-510
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Krogh, A.4
  • 24
    • 0033081336 scopus 로고    scopus 로고
    • A signal encoded in vertebrate DNA that influences nucleosome positioning and alignment
    • Stein, A., and Bina, M. (1999) A signal encoded in vertebrate DNA that influences nucleosome positioning and alignment, Nucleic Acids Res. 27, 848-853.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 848-853
    • Stein, A.1    Bina, M.2
  • 25
    • 0027058511 scopus 로고
    • Introns of the chicken ovalbumin gene promote nucleosome alignment in vitro
    • Lauderdale, J. D., and Stein, A. (1992) Introns of the chicken ovalbumin gene promote nucleosome alignment in vitro, Nucleic Acids Res. 20, 6589-6596.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 6589-6596
    • Lauderdale, J.D.1    Stein, A.2
  • 26
    • 0027333342 scopus 로고
    • Signals in chicken β-globin DNA influence chromatin assembly in vitro
    • Liu, K., Lauderdale, J. D., and Stein, A. (1993) Signals in chicken β-globin DNA influence chromatin assembly in vitro, Mol. Cell. Biol. 13, 7596-7603.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 7596-7603
    • Liu, K.1    Lauderdale, J.D.2    Stein, A.3
  • 27
    • 0027955449 scopus 로고
    • DNA sequence affects nucleosome ordering on replicating plasmids in transfected Cos-1 cells and in vitro
    • Jeong, S., and Stein, A. (1994) DNA sequence affects nucleosome ordering on replicating plasmids in transfected Cos-1 cells and in vitro, J. Biol. Chem. 269, 2197-2205.
    • (1994) J. Biol. Chem. , vol.269 , pp. 2197-2205
    • Jeong, S.1    Stein, A.2
  • 29
    • 0026355279 scopus 로고
    • Chromatin assembly on plasmid DNA in vitro: Apparent spreading of nucleosome alignment from one region of pBR327 by histone H5
    • Jeong, S., Lauderdale, J. D., and Stein, A. (1991) Chromatin assembly on plasmid DNA in vitro: apparent spreading of nucleosome alignment from one region of pBR327 by histone H5, J. Mol. Biol. 222, 1131-1147.
    • (1991) J. Mol. Biol. , vol.222 , pp. 1131-1147
    • Jeong, S.1    Lauderdale, J.D.2    Stein, A.3
  • 30
    • 0020793569 scopus 로고
    • A technique for radiolabeling DNA restriction fragments to high specific activity
    • Feinberg, A. P., and Vogelstein, B. (1983) A technique for radiolabeling DNA restriction fragments to high specific activity, Anal. Biochem. 132, 6-13.
    • (1983) Anal. Biochem. , vol.132 , pp. 6-13
    • Feinberg, A.P.1    Vogelstein, B.2
  • 31
    • 0017713144 scopus 로고
    • Variation in chromatin structure in two cell types from the same tissue: A short DNA repeat length in cerebral cortex neurons
    • Thomas, J. O., and Thompson, R. J. (1977) Variation in chromatin structure in two cell types from the same tissue: a short DNA repeat length in cerebral cortex neurons, Cell 10, 633-640.
    • (1977) Cell , vol.10 , pp. 633-640
    • Thomas, J.O.1    Thompson, R.J.2
  • 32
    • 0019303186 scopus 로고
    • The 5′-ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I
    • Wu, C. (1980) The 5′-ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I, Nature 286, 854-860.
    • (1980) Nature , vol.286 , pp. 854-860
    • Wu, C.1
  • 33
    • 0030570437 scopus 로고    scopus 로고
    • The effect of nucleosome phasing sequences and DNA topology on nucleosome spacing
    • Blank, T. A., and Becker, P. B. (1996) The effect of nucleosome phasing sequences and DNA topology on nucleosome spacing, J. Mol. Biol. 260, 1-8.
    • (1996) J. Mol. Biol. , vol.260 , pp. 1-8
    • Blank, T.A.1    Becker, P.B.2
  • 34
    • 0038497542 scopus 로고
    • Molecular structure of nucleic acids
    • Watson, J. D., and Crick, F. H. C. (1953) Molecular structure of nucleic acids, Nature 171, 737-738.
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.C.2
  • 35
    • 0000818999 scopus 로고
    • General nature of the genetic code for proteins
    • Crick, F. H. C., Barnett, L., Brenner, S., and Watts-Tobin, R. J. (1961) General nature of the genetic code for proteins, Nature 192, 1227-1232.
    • (1961) Nature , vol.192 , pp. 1227-1232
    • Crick, F.H.C.1    Barnett, L.2    Brenner, S.3    Watts-Tobin, R.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.