Unprecedented genomic diversity of AhR1 and AhR2 genes in Atlantic salmon (Salmo salar L.)

Aquatic Toxicology

Volumn 68, Issue 3, 2004, Pages 219-232

  Hansson, Maria C ^a   Wittzell, Håkan ^a   Persson, Kerstin ^a   Von Schantz, Torbjörn ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

Aryl hydrocarbon receptor; Atlantic salmon; Evolution; Gene characterization; Salmon

Indexed keywords

ARYL HYDROCARBON RECEPTOR 1; ARYL HYDROCARBON RECEPTOR 2; COMPLEMENTARY DNA; HELIX LOOP HELIX PROTEIN; RECEPTOR PROTEIN; UNCLASSIFIED DRUG;

GENOME; POLLUTION EFFECT; SALMONID;

ANIMAL TISSUE; ARTICLE; ATLANTIC SALMON; CLADISTICS; CONTROLLED STUDY; COSMID; DNA SEQUENCE; FISH GENETICS; GENE AMPLIFICATION; GENE FUNCTION; GENE IDENTIFICATION; GENE ISOLATION; GENE LIBRARY; GENE PROBE; GENE SEQUENCE; GENETIC CODE; GENETIC SCREENING; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; GENOME ANALYSIS; LIVER; MALE; MOLECULAR CLONING; MOLECULAR EVOLUTION; MUSCLE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; RAINBOW TROUT; SEQUENCE HOMOLOGY; SPECIES COMPARISON; SPLEEN; TETRAPLOIDY; TISSUE DISTRIBUTION;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; COSMIDS; DNA PRIMERS; DNA, COMPLEMENTARY; GENE COMPONENTS; GENE LIBRARY; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECEPTORS, ARYL HYDROCARBON; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SALMO SALAR; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

ONCORHYNCHUS; ONCORHYNCHUS MYKISS; SALMO; SALMO SALAR; SALMONIDAE;

EID: 2542469651     PISSN: 0166445X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquatox.2004.02.006     Document Type: Article

References (26)

1. Abnet C.C., Tanguay R.L., Hahn M.E., Heideman W., Peterson R.E. Two forms of aryl hydrocarbon receptor type 2 in rainbow trout (Oncorhynchus mykiss). Evidence for differential expression and enhancer specificity. J. Biol. Chem. 274:1999;15159-15166
2. Allendorf, F.W., Thorgaard, G.H., 1984. Tetraploidy and the evolution of salmonid fishes. In: Turner, B.J. (Ed.), Evolutionary Genetics of Fishes. Plenum Press, New York, pp. 1-53.
3. Amores A., Force A., Yan Y.L., Joly L., Amemiya C., Fritz A., Ho R.K., Langeland J., Prince V., Wang Y.L., Westerfield M., Ekker M., Postlethwait J.H. Zebrafish Hox clusters and vertebrate genome evolution. Science. 282:1998;1711-1714
4. Andreasen E.A., Hahn M.E., Heideman W., Peterson R.E., Tanguay R.L. The Zebrafish (Danio rerio) aryl hydrocarbon receptor type 1 is a novel vertebrate receptor. Mol. Pharmacol. 62:2002;234-249
5. Aparicio S., Hawker K., Cottage A., Mikawa Y., Zuo L., Venkatesh B., Chen E., Krumlauf R., Brenner S. Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes. Nat. Genet. 16:1997;79-83
6. Bailey G.S., Poulter R.T., Stockwell P.A. Gene duplication in tetraploid fish: model for gene silencing at unlinked duplicated loci. Proc. Natl. Acad. Sci. U.S.A. 75:1978;5575-5579
7. Gu Y.Z., Hogenesch J.B., Bradfield C.A. The PAS superfamily: sensors of environmental and developmental signals. Annu. Rev. Pharmacol. Toxicol. 40:2000;519-561
8. Hahn M.E. Aryl hydrocarbon receptors: diversity and evolution. Chem. Biol. Interact. 141:2002;131-160
9. Hahn M.E., Karchner S.I., Shapiro M.A., Perera S.A. Molecular evolution of two vertebrate aryl hydrocarbon (dioxin) receptors (AHR1 and AHR2) and the PAS family. Proc. Natl. Acad. Sci. U.S.A. 94:1997;13743-13748
10. Hansson M.C., Wittzell H., Persson K., von Schantz T. Characterization of two distinct aryl hydrocarbon receptor (AhR2) genes in Atlantic salmon (Salmo salar) and evidence for multiple AhR2 gene lineages in salmonid fish. Gene. 303:2003;197-206
11. Karchner S.I., Powell W.H., Hahn M.E. Identification and functional characterization of two highly divergent aryl hydrocarbon receptors (AHR1 and AHR2) in the teleost Fundulus heteroclitus. J. Biol. Chem. 274:1999;33814-33824
12. Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 17:2001;1244-1245
13. Lynch M., Conery J.S. The evolutionary fate and consequences of duplicate genes. Science. 290:2000;1151-1155
14. Meyer A., Schartl M. Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr. Opin. Cell Biol. 11:1999;699-704
15. Naruse K., Fukamachi S., Mitani H., Kondo M., Matsuoka T., Kondo S., Hanamura N., Morita Y., Hasegawa K., Nishigaki R., Shimada A., Wada H., Kusakabe T., Suzuki N., Kinoshita M., Kanamori A., Terado T., Kimura H., Nonaka M., Shima A. A detailed linkage map of medaka. Oryzias latipes: comparative genomics and genome evolution. Genetics. 154:2000;1773-1784
16. Nebert D.W. Drug-metabolizing enzymes in ligand-modulated transcription. Biochem. Pharmacol. 47:1994;25-37
17. Ohno, S., 1970. Evolution by Gene Duplication. Springer-Verlag, Berlin.
18. Poland A., Knutson J.C. 2, 3, 7, 8-Tetrachlorodibenzo-p-dioxin and related halogenated aromatic hydrocarbons: examination of the mechanism of toxicity. Annu. Rev. Pharmacol. Toxicol. 22:1982;517-554
19. Powell W.H., Bright R., Bello S.M., Hahn M.E. Developmental and tissue-specific expression of AHR1, AHR2, and ARNT2 in dioxin-sensitive and -resistant populations of the marine fish Fundulus heteroclitus. Toxicol. Sci. 57:2000;229-239
20. Prasch A.L., Teraoka H., Carney S.A., Dong W., Hiraga T., Stegeman J.J., Heideman W., Peterson R.E. Aryl hydrocarbon receptor 2 mediates 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin developmental toxicity in zebrafish. Toxicol. Sci. 76:2003;138-150
21. Robinson-Rechavi M., Marchand O., Escriva H., Laudet V. An ancestral whole-genome duplication may not have been responsible for the abundance of duplicated fish genes. Curr. Biol. 11:2001;R458-R459
22. Roy N.K., Wirgin I. Characterization of the aromatic hydrocarbon receptor gene and its expression in Atlantic tomcod. Arch. Biochem. Biophys. 344:1997;373-386
23. Tanguay R.L., Abnett C.C., Heideman W., Peterson R.E. Cloning and characterization of the zebrafish (Danio rerio) aryl hydrocarbon receptor. Biochim. Biophys. Acta. 1444:1999;35-48
24. Taylor J.S., Van de P.Y., Meyer A. Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis. Curr. Biol. 11:2001;R1005-R1008
25. Thompson J.D., Higgins D.G., Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680
26. Wittbrodt J., Meyer A., Schartl M. More genes in fish? BioEssays. 20:1998;511-515