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1
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0344721480
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The MHC Sequencing Consortium: Complete sequence and gene map of a human major histocompatibility complex
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The MHC Sequencing Consortium: Complete sequence and gene map of a human major histocompatibility complex. Nature 1999, 401:921-923.
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(1999)
Nature
, vol.401
, pp. 921-923
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2
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0038271888
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Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence
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This paper provides the sequence of the chimpanzee class I region sequence and its comparison to the human.
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Anzai T., Shiina T., Kimura N., Yanagiya K., Kohara S., Shigenari A., Yamagata T., Kulski J.K., Naruse T.K., Fujimori Y., et al. Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence. Proc Natl Acad Sci USA. 100:2003;7708-7713 This paper provides the sequence of the chimpanzee class I region sequence and its comparison to the human.
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(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7708-7713
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Anzai, T.1
Shiina, T.2
Kimura, N.3
Yanagiya, K.4
Kohara, S.5
Shigenari, A.6
Yamagata, T.7
Kulski, J.K.8
Naruse, T.K.9
Fujimori, Y.10
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3
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0037275841
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Comparative and evolutionary analysis of the rhesus macaque extended MHC class II region
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Sudbrak R., Reinhardt R., Hennig S., Lehrach H., Gunther E., Walter L. Comparative and evolutionary analysis of the rhesus macaque extended MHC class II region. Immunogenetics. 54:2003;699-704
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(2003)
Immunogenetics
, vol.54
, pp. 699-704
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Sudbrak, R.1
Reinhardt, R.2
Hennig, S.3
Lehrach, H.4
Gunther, E.5
Walter, L.6
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5
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0036032222
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Quod erat faciendum: Sequence analysis of the H2-D and H2-Q regions of 129/SvJ mice
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Sequencing and analysis of the most centromeric part of the mouse class I region. We discuss the origin of the H2-K (extended class II) region.
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Kumánovics A., Madan A., Qin S., Rowen L., Hood L., Fischer Lindahl K. Quod erat faciendum: sequence analysis of the H2-D and H2-Q regions of 129/SvJ mice. Immunogenetics. 545:2002;479-489 Sequencing and analysis of the most centromeric part of the mouse class I region. We discuss the origin of the H2-K (extended class II) region.
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(2002)
Immunogenetics
, vol.545
, pp. 479-489
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Kumánovics, A.1
Madan, A.2
Qin, S.3
Rowen, L.4
Hood, L.5
Fischer Lindahl, K.6
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6
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0345659228
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Co-duplication of olfactory receptor and MHC class I genes in the mouse major histocompatibility complex
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The paper presents the mouse extended class I region sequence and its comparison to human. The discussed sequence includes the Mhc-linked olfactory receptor genes and the mouse H2-M2 and M3 class I genes.
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Amadou C., Younger R.M., Sims S., Matthews L.H., Rogers J., Kumánovics A., Ziegler A., Beck S., Fischer Lindahl K. Co-duplication of olfactory receptor and MHC class I genes in the mouse major histocompatibility complex. Hum Mol Genet. 12:2003;3025-3040 The paper presents the mouse extended class I region sequence and its comparison to human. The discussed sequence includes the Mhc-linked olfactory receptor genes and the mouse H2-M2 and M3 class I genes.
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(2003)
Hum Mol Genet
, vol.12
, pp. 3025-3040
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Amadou, C.1
Younger, R.M.2
Sims, S.3
Matthews, L.H.4
Rogers, J.5
Kumánovics, A.6
Ziegler, A.7
Beck, S.8
Fischer Lindahl, K.9
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7
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0242417614
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Species-specific class I gene expansions formed the telomeric 1 mb of the mouse major histocompatibility complex
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The paper describes the region encoding of the H2-M1 and M10 families of genes that are expressed in the vomeronasal organ [28]. It provides the comparative analysis of the telomeric half of the human and mouse class I region.
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Takada T., Kumánovics A., Amadou C., Yoshino M., Jones E.P., Athanasiou M., Evans G.A., Fischer Lindahl K. Species-specific class I gene expansions formed the telomeric 1 mb of the mouse major histocompatibility complex. Genome Res. 13:2003;589-600 The paper describes the region encoding of the H2-M1 and M10 families of genes that are expressed in the vomeronasal organ [28]. It provides the comparative analysis of the telomeric half of the human and mouse class I region.
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(2003)
Genome Res
, vol.13
, pp. 589-600
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Takada, T.1
Kumánovics, A.2
Amadou, C.3
Yoshino, M.4
Jones, E.P.5
Athanasiou, M.6
Evans, G.A.7
Fischer Lindahl, K.8
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8
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0348013068
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Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse
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Sequencing and comparative analysis of the human and mouse class III region that encodes a large number of genes, including some that are often investigated in diseases (e.g. TNFA).
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Xie T., Rowen L., Aguado B., Ahearn M.E., Madan A., Qin S., Campbell R.D., Hood L. Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. Genome Res. 13:2003;2621-2636 Sequencing and comparative analysis of the human and mouse class III region that encodes a large number of genes, including some that are often investigated in diseases (e.g. TNFA).
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(2003)
Genome Res
, vol.13
, pp. 2621-2636
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Xie, T.1
Rowen, L.2
Aguado, B.3
Ahearn, M.E.4
Madan, A.5
Qin, S.6
Campbell, R.D.7
Hood, L.8
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9
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0036319526
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Physical mapping of the major histocompatibility complex class II and class III regions of the rat
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Walter L., Hurt P., Himmelbauer H., Sudbrak R., Günther E. Physical mapping of the major histocompatibility complex class II and class III regions of the rat. Immunogenetics. 54:2002;268-275
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(2002)
Immunogenetics
, vol.54
, pp. 268-275
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Walter, L.1
Hurt, P.2
Himmelbauer, H.3
Sudbrak, R.4
Günther, E.5
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10
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0035869472
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Physical map and expression profile of genes of the telomeric class I gene region of the rat MHC
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Ioannidu S., Walter L., Dressel R., Günther E. Physical map and expression profile of genes of the telomeric class I gene region of the rat MHC. J Immunol. 166:2001;3957-3965
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(2001)
J Immunol
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, pp. 3957-3965
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Ioannidu, S.1
Walter, L.2
Dressel, R.3
Günther, E.4
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11
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0142107389
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The phylogenetic history of the MHC class I gene families in pig, including a fossil gene predating mammalian radiation
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A good example of how the analysis of pseudogenes and gene fragments can help us understand the genome organization and evolution.
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Renard C., Chardon P., Vaiman M. The phylogenetic history of the MHC class I gene families in pig, including a fossil gene predating mammalian radiation. J Mol Evol. 57:2003;420-434 A good example of how the analysis of pseudogenes and gene fragments can help us understand the genome organization and evolution.
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(2003)
J Mol Evol
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, pp. 420-434
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Renard, C.1
Chardon, P.2
Vaiman, M.3
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12
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1242269889
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Nucleotide sequencing analysis of the swine 433-kb genomic segment located between the non-classical and classical SLA class I gene clusters
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This paper and [13,14] are the primary papers describing the pig class I region sequence.
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Shigenari A., Ando A., Renard C., Chardon P., Shiina T., Kulski J.K., Yasue H., Inoko H. Nucleotide sequencing analysis of the swine 433-kb genomic segment located between the non-classical and classical SLA class I gene clusters. Immunogenetics. 55:2003;695-705 This paper and [13, 14] are the primary papers describing the pig class I region sequence.
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(2003)
Immunogenetics
, vol.55
, pp. 695-705
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Shigenari, A.1
Ando, A.2
Renard, C.3
Chardon, P.4
Shiina, T.5
Kulski, J.K.6
Yasue, H.7
Inoko, H.8
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13
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0035133144
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Sequence of the swine major histocompatibility complex region containing all non-classical class I genes
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Chardon P., Rogel-Gaillard C., Cattolico L., Duprat S., Vaiman M., Renard C. Sequence of the swine major histocompatibility complex region containing all non-classical class I genes. Tissue Antigens. 57:2001;55-65
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(2001)
Tissue Antigens
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, pp. 55-65
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Chardon, P.1
Rogel-Gaillard, C.2
Cattolico, L.3
Duprat, S.4
Vaiman, M.5
Renard, C.6
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14
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0034802101
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Sequence of the pig major histocompatibility region containing the classical class I genes
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Renard C., Vaiman M., Chiannilkulchai N., Cattolico L., Robert C., Chardon P. Sequence of the pig major histocompatibility region containing the classical class I genes. Immunogenetics. 53:2001;490-500
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(2001)
Immunogenetics
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Renard, C.1
Vaiman, M.2
Chiannilkulchai, N.3
Cattolico, L.4
Robert, C.5
Chardon, P.6
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15
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0038643459
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Comparative genome organization of human, murine, and feline MHC class II region
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The paper provides the sequence of the class II region from cat, and its comparison to human and mouse.
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Yuhki N., Beck T., Stephens R.M., Nishigaki Y., Newmann K., O'Brien S.J. Comparative genome organization of human, murine, and feline MHC class II region. Genome Res. 13:2003;1169-1179 The paper provides the sequence of the class II region from cat, and its comparison to human and mouse.
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(2003)
Genome Res
, vol.13
, pp. 1169-1179
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Yuhki, N.1
Beck, T.2
Stephens, R.M.3
Nishigaki, Y.4
Newmann, K.5
O'Brien, S.J.6
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16
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0033613425
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The chicken B locus is a minimal essential major histocompatibility complex
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Kaufman J., Milne S., Gobel T.W., Walker B.A., Jacob J.P., Auffray C., Zoorob R., Beck S. The chicken B locus is a minimal essential major histocompatibility complex. Nature. 401:1999;923-925
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(1999)
Nature
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Kaufman, J.1
Milne, S.2
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Walker, B.A.4
Jacob, J.P.5
Auffray, C.6
Zoorob, R.7
Beck, S.8
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17
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0032954707
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Gene organization of the quail major histocompatibility complex (MhcCoja) class I gene region
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Shiina T., Shimizu C., Oka A., Teraoka Y., Imanishi T., Gojobori T., Hanzawa K., Watanabe S., Inoko H. Gene organization of the quail major histocompatibility complex (MhcCoja) class I gene region. Immunogenetics. 49:1999;384-394
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(1999)
Immunogenetics
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Shiina, T.1
Shimizu, C.2
Oka, A.3
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Imanishi, T.5
Gojobori, T.6
Hanzawa, K.7
Watanabe, S.8
Inoko, H.9
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18
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0035135822
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Characterization of the MHC class I region of the Japanese pufferfish (Fugu rubripes)
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Clark M.S., Shaw L., Kelly A., Snell P., Elgar G. Characterization of the MHC class I region of the Japanese pufferfish (Fugu rubripes). Immunogenetics. 52:2001;174-185
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(2001)
Immunogenetics
, vol.52
, pp. 174-185
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Clark, M.S.1
Shaw, L.2
Kelly, A.3
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Elgar, G.5
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19
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0036200965
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Nucleotide sequence of the MHC class I genomic region of a teleost, the medaka (Oryzias latipes)
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Matsuo M.Y., Asakawa S., Shimizu N., Kimura H., Nonaka M. Nucleotide sequence of the MHC class I genomic region of a teleost, the medaka (Oryzias latipes). Immunogenetics. 53:2002;930-940
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(2002)
Immunogenetics
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Matsuo, M.Y.1
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Nonaka, M.5
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20
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0036380364
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Evidence that the separation of Mhc class II from class I loci in the zebrafish, Danio rerio, occurred by translocation
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Kuroda N., Figueroa F., O'hUigin C., Klein J. Evidence that the separation of Mhc class II from class I loci in the zebrafish, Danio rerio, occurred by translocation. Immunogenetics. 54:2002;418-430
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(2002)
Immunogenetics
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Kuroda, N.1
Figueroa, F.2
O'Huigin, C.3
Klein, J.4
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21
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18544382074
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The MHC haplotype project: A resource for HLA-linked association studies
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Allcock R.J., Atrazhev A.M., Beck S., de Jong P.J., Elliott J.F., Forbes S., Halls K., Horton R., Osoegawa K., Rogers J., et al. The MHC haplotype project: A resource for HLA-linked association studies. Tissue Antigens. 59:2002;520-521.
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(2002)
Tissue Antigens
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, pp. 520-521
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Allcock, R.J.1
Atrazhev, A.M.2
Beck, S.3
De Jong, P.J.4
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Horton, R.8
Osoegawa, K.9
Rogers, J.10
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22
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0001029086
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Genomic organization of the mammalian Mhc
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In this paper, we provide the most complete description of the mouse Mhc sequence to date and its comparison to human. We discuss the details of genomic structure and evolution of the Mhc.
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Kumánovics A., Takada T., Fischer Lindahl K. Genomic organization of the mammalian Mhc. Annu Rev Immunol. 21:2003;629-657 In this paper, we provide the most complete description of the mouse Mhc sequence to date and its comparison to human. We discuss the details of genomic structure and evolution of the Mhc.
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(2003)
Annu Rev Immunol
, vol.21
, pp. 629-657
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Kumánovics, A.1
Takada, T.2
Fischer Lindahl, K.3
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23
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0034744361
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How selection shapes variation of the human major histocompatibility complex: A review
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Meyer D., Thomson G. How selection shapes variation of the human major histocompatibility complex: a review. Ann Hum Genet. 65:2001;1-26
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(2001)
Ann Hum Genet
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Meyer, D.1
Thomson, G.2
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Evolution of the Mhc class I region: The framework hypothesis
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Amadou C. Evolution of the Mhc class I region: the framework hypothesis. Immunogenetics. 49:1999;362-367
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(1999)
Immunogenetics
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Amadou, C.1
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Orthology, paralogy and proposed classification for paralogy subtypes
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Sonnhammer E.L., Koonin E.V. Orthology, paralogy and proposed classification for paralogy subtypes. Trends Genet. 18:2002;619-620
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Trends Genet
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Sonnhammer, E.L.1
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0034686608
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Deficiencies of human complement component C4A and C4B and heterozygosity in length variants of RP-C4-CYP21-TNX (RCCX) modules in Caucasians. the load of RCCX genetic diversity on major histocompatibility complex-associated disease
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Blanchong C.A., Zhou B., Rupert K.L., Chung E.K., Jones K.N., Sotos J.F., Zipf W.B., Rennebohm R.M., Yung Yu C. Deficiencies of human complement component C4A and C4B and heterozygosity in length variants of RP-C4-CYP21-TNX (RCCX) modules in Caucasians. The load of RCCX genetic diversity on major histocompatibility complex-associated disease. J Exp Med. 191:2000;2183-2196
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Blanchong, C.A.1
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Yung Yu, C.9
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0024440685
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Evolution of the major histocompatibility complex: Independent origin of nonclassical class I genes in different groups of mammals
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Hughes A.L., Nei M. Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals. Mol Biol Evol. 6:1989;559-579
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Functional expression of murine V2R pheromone receptors involves selective association with the M10 and M1 families of MHC class Ib molecules
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Loconto J., Papes F., Chang E., Stowers L., Jones E.P., Takada T., Kumánovics A., Fischer Lindahl K., Dulac C. Functional expression of murine V2R pheromone receptors involves selective association with the M10 and M1 families of MHC class Ib molecules. Cell. 112:2003;607-618
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The complete genomic sequence of 424,015 bp at the centromeric end of the HLA class I region: Gene content and polymorphism
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Guillaudeux T., Janer M., Wong G.K., Spies T., Geraghty D.E. The complete genomic sequence of 424, 015 bp at the centromeric end of the HLA class I region: gene content and polymorphism. Proc Natl Acad Sci USA. 95:1998;9494-9499
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Nucleotide sequence analysis of the HLA class I region spanning the 237-kb segment around the HLA-B and -C genes
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Mizuki N., Ando H., Kimura M., Ohno S., Miyata S., Yamazaki M., Tashiro H., Watanabe K., Ono A., Taguchi S., et al. Nucleotide sequence analysis of the HLA class I region spanning the 237-kb segment around the HLA-B and -C genes. Genomics. 42:1997;55-66
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Bat-1 genes and the origin of multiple class I loci in the H-2D region
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HLA-A and B polymorphisms predate the divergence of humans and chimpanzees
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MHC polymorphism pre-dating speciation
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Haplotype frequency estimation in patient populations: The effect of departures from Hardy-Weinberg proportions and collapsing over a locus in the HLA region
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Single R.M., Meyer D., Hollenbach J.A., Nelson M.P., Noble J.A., Erlich H.A., Thomson G. Haplotype frequency estimation in patient populations: the effect of departures from Hardy-Weinberg proportions and collapsing over a locus in the HLA region. Genet Epidemiol. 22:2002;186-195
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Haplotype-specific linkage disequilibrium patterns define the genetic topography of the human MHC
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Hum Mol Genet
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An integrated haplotype map of the human major histocompatibility complex
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Walsh E.C., Mather K.A., Schaffner S.F., Farwell L., Daly M.J., Patterson N., Cullen M., Carrington M., Bugawan T.L., Erlich H., et al. An integrated haplotype map of the human major histocompatibility complex. Am J Hum Genet. 73:2003;580-590
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A novel MHC class I-like gene is mutated in patients with hereditary haemochromatosis
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A 320-kilobase artificial chromosome encoding the human HLA DR3-DQ2 MHC haplotype confers HLA restriction in transgenic mice
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Chen Z., Dudek N., Wijburg O., Strugnell R., Brown L., Deliyannis G., Jackson D., Koentgen F., Gordon T., McCluskey J. A 320-kilobase artificial chromosome encoding the human HLA DR3-DQ2 MHC haplotype confers HLA restriction in transgenic mice. J Immunol. 168:2002;3050-3056
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