Nucleotide sequence analysis of the HLA class I region spanning the 237- kb segment around the HLA-B and -C genes

Genomics

Volumn 42, Issue 1, 1997, Pages 55-66

  Mizuki, Nobuhisa ^a,b   Ando, Hitoshi ^c   Kimura, Minoru ^a   Ohno, Shigeaki ^b   Miyata, Shoji ^a   Yamazaki, Masaaki ^d   Tashiro, Hiroyuki ^d   Watanabe, Koji ^d   Ono, Ayako ^d   Taguchi, Susumu ^d   Sugawara, Chiyo ^d   Fukuzumi, Yasuhito ^d   Okumura, Katsuzumi ^e   Goto, Kaori ^a,b   Ishihara, Mami ^b   Nakamura, Satoshi ^b   Yonemoto, Junichi ^b   Kikuti, Yara Yukie ^a   Shiina, Takashi ^a   Chen, Lei ^a   Ando, Asako ^a   Ikemura, Toshimichi ^f   Inoko, Hidetoshi ^a   more..

^a TOKAI UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b YOKOHAMA CITY UNIVERSITY   (Japan)

^c Japanese Red Cross Society   (Japan)

^d Fujiya Co Ltd   (Japan)

^e MIE UNIVERSITY   (Japan)

^f NATIONAL INSTITUTE OF GENETICS   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; DIHYDROFOLATE REDUCTASE; HLA ANTIGEN CLASS 1; HLA B ANTIGEN; HLA C ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1;

ARTICLE; CENTROMERE; CHROMOSOME 6; CHROMOSOME MAP; COSMID; DNA SEQUENCE; GENETIC ORGANIZATION; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PSEUDOGENE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TELOMERE;

EID: 0031570314     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1997.4708     Document Type: Article

References (26)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. A. (1990). A basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. Bahram, S., Mizuki, N., Inoko, H., and Spies, T. (1996). Nucleotide sequence of the human MHC class I MICA gene. Immunogenetics 44: 80-81.
3. Bronson, S. K, Pei, J., Taillon-Miller, P., Chorney, M. J., Geraghty, D. E., and Chaplin, D. D. (1991). Isolation and characterization of yeast artificial chromosome clones linking the HLA-B and HLA-C loci. Proc. Natl. Acad. Sci. USA 88: 1676-1680.
4. Campbell, R. D., and Trowsdale, J. (1993). Map of the human MHC. Immunol. Today 14: 349-352.
5. Chen, M.-J., Shimada, T., Moulton, A. D., Harrison, M., and Nienhuis, A. W. (1982). Intronless human dihydrofolate reductase genes are derived from processed RNA molecules. Proc. Natl. Acad. Sci. USA 79: 7435-7439.
6. Dingwall, C., and Laskey, R. A. (1991). Nuclear targeting sequences - A consensus? Trends Biochem. Sci. 16: 478-481.
7. Fukagawa, T., Sugaya, K, Matsumoto, K, Okumura, K., Ando, A., Inoko, H., and Ikemura, T. (1995). A boundary of long-range G+C% mosaic domains in the human MHC locus: Pseudoautosomal boundary-like sequence exists near the boundary. Genomics 25: 184-191.
8. Geraghty, D. E., Koller, B. H., Hansen, J. A., and Orr, H. T. (1992). The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. J. Immunol. 149: 1934-1946.
9. Imai, T., and Olson, M. V. (1990). Second-generation approach to the construction of yeast artificial-chromosome libraries. Genomics 8: 297-303.
10. Krishnan, B. R., Jamry, I., and Chaplin, D. D. (1995). Feature mapping of the HLA class I region: Localization of the POU5F1 and TCF19 genes. Genomics 30: 53-58.
11. Koop, B. F., Rowen, L., Chen, W.-Q., Deshpande, M., Lee, H., and Hood, L. (1993). Sequence length and error analysis of Sequenase and Taq (cycle) sequencing methods. BioTechniques 14: 442-447.
12. Koop, B. F., Rowen, L., Wang, K., Kuo, C. L., Seto, D., Lenstra, J. A., Howard, S., Shan, W., Deshpande, P., and Hood, L. (1994). The human T-cell TCRAC/TCRDC (Cα/Cδ) region: Organization, sequence, and evolution of 97.6 kb of DNA. Genomics 19: 478-493.
13. Kuwano, Y., and Wool, I. G. (1992). The primary structure of rat ribosomal protein L3. Biochem. Biophys. Res. Commun. 187: 58-64.
14. Mizuki, N., Kimura, M., Ohno, S., Miyata, S., Sato, M., Ando, H., Ishihara, M., Goto, K., Ono, A., Taguchi, S., Yamazaki, M., Okumura, K., Nogami, M., Taguchi, H., Ando, A., and Inoko, H. (1996). Isolation of cDNA and genomic clones of a human Ras-related GTP-binding protein gene and its chromosomal localization to the long arm of chromosome 7, 7q36. Genomics 34: 114-118.
15. Mizuki, N., Ota, M., Kimura, M., Ohno, S., Ando, H., Katsuyama, Y., Yamazaki, M., Watanabe, K., Goto, K., Nakamura, S., Bahram, S., and Inoko, H. (1997). Triplet repeat polymorphism in the transmembrane region of the MICA gene: A strong association of six GCT repetitions with Behçet disease. Proc. Natl. Acad. Sci. USA 94: 1298-1303.
16. Pichon, L., Cam, G., Bouric, P., Giffon, T., Chauvel, B., Lepourcelet, M., Legall, J. Y., and David, V. (1996). Structural analysis of the HLA-A/HLA-F subregion: Precise localization of two new multigene families closely associated with the HLA class I se-quences. Genomics 32: 236-244.
17. Pohla, H., Kuon, W., Tabaczewski, P., Doerner, C., and Weiss, E. H. (1989). Allelic variation in HLA-B and HLA-C sequences and the evolution of the HLA-B alleles. Immunogenetics 29: 297-307.
18. Smith, T. F., and Waterman, M. S. (1981). Identification of common molecular sequences. J. MoI. Biol. 147: 195-197.
19. Steinle, A., and Schendel, D. J. (1994). HLA class I alleles of LCL 721 and 174XCGM.T2 (T2). Tissue Antigens 44: 268-270.
20. Takahashi, E., Hori, T., O'Connell, P., Leppert, M., and White, R. (1990). R-banding and nonisotopic in situ hybridization: Precise localization of the human type II collagen gene (COL2A1). Hum. Genet. 86: 14-16.
21. Takahashi, E., Yamauchi, M., Tsuji, H., Hitomi, H., Meuth, M., and Hori, T. (1991). Chromosome mapping of the human cytidine-5′-triphosphate synthetase (CTPS) gene to band 1p34.1-p34.3 by fluorescence in situ hybridization. Hum. Genet. 88: 119-121.
22. Tiwari, J. L., and Terasaki, P. I. (1985). "HLA and Disease Associations," Springer-Ver lag, New York.
23. Uberbacker, E. C., and Mural, R. J. (1991). Location protein coding region in human DNA sequences by a multiple sensor-neural network approach. Proc. Natl. Acad. Sci. USA 88: 11262-11264.
24. Venditti, C. P., Harris, J. M., Geraghty, D. E., and Chorney, M. J. (1994). Mapping and characterization of non-HLA multigene assemblages in the human MHC class I region. Genomics 22: 257-266.
25. Vernet, C., Ribouchon, M.-T., Chimini, G., Jouanolle, A.-M., Sidibé, I., and Pontarotti, P. (1993). A novel coding sequence belonging to a new multicopy gene family mapping within the human MHC class I region. Immunogenetics 3: 47-53.
26. Wilson, R. K., Koop, B. F., Chen, C., Halloran, N., Sciammis, R., and Hood, L. (1992). Nucleotide sequence analysis of the 95-kb 3′ terminal region of the murine T-cell receptor a/d chain locus: Strategy and methodology. Genomics 13: 1198-1208.