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Volumn 67, Issue 4, 2005, Pages 555-572

Estimating the proportion of true null hypotheses, with application to DNA microarray data

Author keywords

Bioinformatics; Decreasing and convex density; Dependent test statistics; Multiple testing; Nonparametric maximum likelihood estimator; p value

Indexed keywords


EID: 25144456446     PISSN: 13697412     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1467-9868.2005.00515.x     Document Type: Article
Times cited : (220)

References (34)
  • 2
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Statist. Soc. B, 57, 289-300.
    • (1995) J. R. Statist. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 3
    • 0034370950 scopus 로고    scopus 로고
    • The adaptive control of the false discovery rate in multiple hypothesis testing with independent statistics
    • Benjamini, Y. and Hochberg, Y. (2000) The adaptive control of the false discovery rate in multiple hypothesis testing with independent statistics. J. Educ. Behav. Statist., 25, 60-83.
    • (2000) J. Educ. Behav. Statist. , vol.25 , pp. 60-83
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y. and Yekutieli, D. (2001) The control of the false discovery rate in multiple testing under dependency. Ann. Statist., 29, 1165-1188
    • (2001) Ann. Statist. , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 5
    • 2442476225 scopus 로고    scopus 로고
    • A note on the adaptive control of false discovery rates
    • Black, M. A. (2004) A note on the adaptive control of false discovery rates. J. R. Statist. Soc. B, 66, 297-304.
    • (2004) J. R. Statist. Soc. B , vol.66 , pp. 297-304
    • Black, M.A.1
  • 6
    • 0034526621 scopus 로고    scopus 로고
    • Microarray expression profiling identifies genes with altered expression in hdl-deficient mice
    • Callow, M. J., Dudoit, S., Gong, E. L., Speed, T. P. and Rubin, E. M. (2000) Microarray expression profiling identifies genes with altered expression in hdl-deficient mice. Genome Res., 10, 2022-2029.
    • (2000) Genome Res. , vol.10 , pp. 2022-2029
    • Callow, M.J.1    Dudoit, S.2    Gong, E.L.3    Speed, T.P.4    Rubin, E.M.5
  • 7
    • 2442583275 scopus 로고    scopus 로고
    • A simple procedure for the selection of significant effects
    • Cox, D. R. and Wong, M. Y. (2004) A simple procedure for the selection of significant effects. J. R. Statist. Soc. B, 66, 395-400.
    • (2004) J. R. Statist. Soc. B , vol.66 , pp. 395-400
    • Cox, D.R.1    Wong, M.Y.2
  • 8
    • 2142732441 scopus 로고    scopus 로고
    • Large-scale simultaneous hypotheses testing: The choice of a null hypothesis
    • Efron, B. (2004) Large-scale simultaneous hypotheses testing: the choice of a null hypothesis. J. Am. Statist. Ass., 99, 96-104.
    • (2004) J. Am. Statist. Ass. , vol.99 , pp. 96-104
    • Efron, B.1
  • 10
    • 0040970668 scopus 로고    scopus 로고
    • On the false discovery rate and expected type i errors
    • Finner, H. and Roters, M. (2001) On the false discovery rate and expected type I errors. Biometr. J., 43, 985-1005.
    • (2001) Biometr. J. , vol.43 , pp. 985-1005
    • Finner, H.1    Roters, M.2
  • 11
    • 10844286757 scopus 로고    scopus 로고
    • A stochastic process approach to false discovery control
    • Genovese, C. R. and Wasserman, L. (2004) A stochastic process approach to false discovery control. Ann. Statist., 32, 1035-1061.
    • (2004) Ann. Statist. , vol.32 , pp. 1035-1061
    • Genovese, C.R.1    Wasserman, L.2
  • 12
    • 84945603474 scopus 로고
    • On the theory of mortality measurement: Part II
    • Grenander, U. (1956) On the theory of mortality measurement: part II. Skand. Akt., 39, 125-153.
    • (1956) Skand. Akt. , vol.39 , pp. 125-153
    • Grenander, U.1
  • 13
    • 0035528158 scopus 로고    scopus 로고
    • Estimation of a convex function: Characterizations and asymptotic theory
    • Groeneboom, P., Jongbloed, G. and Wellner, J. A. (2001) Estimation of a convex function: characterizations and asymptotic theory. Ann. Statist., 29, 1653-1698.
    • (2001) Ann. Statist. , vol.29 , pp. 1653-1698
    • Groeneboom, P.1    Jongbloed, G.2    Wellner, J.A.3
  • 14
    • 25144514299 scopus 로고    scopus 로고
    • The support reduction algorithm for computing nonparametric function estimates in mixture models
    • Department of Stochastics, Vrije Universiteit Amsterdam, Amsterdam
    • Groeneboom, P., Jongbloed, G. and Wellner, J. A. (2004) The support reduction algorithm for computing nonparametric function estimates in mixture models. Technical Report. Department of Stochastics, Vrije Universiteit Amsterdam, Amsterdam.
    • (2004) Technical Report
    • Groeneboom, P.1    Jongbloed, G.2    Wellner, J.A.3
  • 17
    • 0036012343 scopus 로고    scopus 로고
    • Replicated microarray data
    • Lönnstedt, I. and Speed, T. (2002) Replicated microarray data. Statist. Sin., 12, 31-46.
    • (2002) Statist. Sin. , vol.12 , pp. 31-46
    • Lönnstedt, I.1    Speed, T.2
  • 19
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
    • Newton, M. A., Kendziorski, C. M., Richmond, C. S., Blattner, F. R. and Tsui, K. W. (2001) On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J. Computnl Biol., 8, 37-52.
    • (2001) J. Computnl Biol. , vol.8 , pp. 37-52
    • Newton, M.A.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 20
    • 4444235995 scopus 로고    scopus 로고
    • Detecting differential gene expression with a semiparametric hierarchical mixture model
    • Newton, M. A., Noueiry, A., Sarkar, D. and Ahlquist, P. (2004) Detecting differential gene expression with a semiparametric hierarchical mixture model. Biostatistics, 5, 155-176.
    • (2004) Biostatistics , vol.5 , pp. 155-176
    • Newton, M.A.1    Noueiry, A.2    Sarkar, D.3    Ahlquist, P.4
  • 22
    • 0038156106 scopus 로고    scopus 로고
    • Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values
    • Pounds, S. and Morris, S. W. (2003) Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values. Bioinformatics, 19, 1236-1242.
    • (2003) Bioinformatics , vol.19 , pp. 1236-1242
    • Pounds, S.1    Morris, S.W.2
  • 25
    • 0000992959 scopus 로고
    • Plots of p-values to evaluate many tests simultaneously
    • Schweder, T. and Spjøtvoll, E. (1982) Plots of p-values to evaluate many tests simultaneously. Biometrika, 69, 493-502.
    • (1982) Biometrika , vol.69 , pp. 493-502
    • Schweder, T.1    Spjøtvoll, E.2
  • 26
    • 67649345185 scopus 로고
    • An improved Bonferroni procedure for multiple tests of significance
    • Simes, R. J. (1986) An improved Bonferroni procedure for multiple tests of significance. Biometrika, 73, 751-754.
    • (1986) Biometrika , vol.73 , pp. 751-754
    • Simes, R.J.1
  • 27
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth, G. K. (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statist. Appl. Genet. Molec. Biol., 3, no. 1.
    • (2004) Statist. Appl. Genet. Molec. Biol. , vol.3 , Issue.1
    • Smyth, G.K.1
  • 29
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey, J. D. (2002) A direct approach to false discovery rates. J. R. Statist. Soc. B, 64, 479-498.
    • (2002) J. R. Statist. Soc. B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 30
    • 1142273091 scopus 로고    scopus 로고
    • Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: A unified approach
    • Storey, J. D., Taylor, J. E. and Siegmund, D. (2004) Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach. J. R. Statist. Soc. B, 66, 187-205.
    • (2004) J. R. Statist. Soc. B , vol.66 , pp. 187-205
    • Storey, J.D.1    Taylor, J.E.2    Siegmund, D.3
  • 31
    • 0003670427 scopus 로고    scopus 로고
    • Estimating false discovery rates under dependence, with application to DNA microarrays
    • Department of Statistics, Stanford University, Stanford
    • Storey, J. D. and Tibshirani, R. (2001) Estimating false discovery rates under dependence, with application to DNA microarrays. Technical Report 2001-217. Department of Statistics, Stanford University, Stanford.
    • (2001) Technical Report , vol.2001 , Issue.217
    • Storey, J.D.1    Tibshirani, R.2
  • 32
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J. D. and Tibshirani, R. (2003) Statistical significance for genomewide studies. Proc. Natn. Acad. Sci. USA, 100, 3889-3894.
    • (2003) Proc. Natn. Acad. Sci. USA , vol.100 , pp. 3889-3894
    • Storey, J.D.1    Tibshirani, R.2
  • 33
    • 0034857407 scopus 로고    scopus 로고
    • Estimation of the number of "true" null hypotheses in multivariate analysis of neuroimaging data
    • Turkheimer, F. E., Smith, C. B. and Schmidt, K. (2001) Estimation of the number of "true" null hypotheses in multivariate analysis of neuroimaging data. NeuroImage, 13, 920-930.
    • (2001) NeuroImage , vol.13 , pp. 920-930
    • Turkheimer, F.E.1    Smith, C.B.2    Schmidt, K.3
  • 34
    • 25144477718 scopus 로고
    • Some algorithmic aspects of the theory of optimal design
    • Wynn, H. (1970) Some algorithmic aspects of the theory of optimal design. Ann. Math. Statist., 6, 1286-1301.
    • (1970) Ann. Math. Statist. , vol.6 , pp. 1286-1301
    • Wynn, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.