Molecular changes associated with the setting up of secondary growth in aspen

Journal of Experimental Botany

Volumn 56, Issue 418, 2005, Pages 2211-2227

  Van Raemdonck, Damien ^a   Pesquet, Edouard ^b   Cloquet, Sophie ^a   Beeckman, Hans ^c   Boerjan, Wout ^d   Goffner, Deborah ^b   El Jaziri, Mondher ^a   Baucher, Marie ^a  

^a UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

^b Centre National de la Recherche Scientifique   (France)

^c ROYAL MUSEUM FOR CENTRAL AFRICA   (Belgium)

^d DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

Author keywords

AP2 ERF; Aspen; cDNA AFLP; In situ RT PCR; RING H2; Secondary growth; Vascular cambium

Indexed keywords

DNA; GENES; MOLECULAR BIOLOGY; TISSUE;

AP2/ERF; ASPEN; CDNA-AFLP; IN SITU RT-PCR; RING-H2; SECONDARY GROWTH; VASCULAR CAMBIUM;

GROWTH KINETICS;

COMPLEMENTARY DNA; PLANT DNA; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ASPEN; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY; PLANT STEM; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; DNA, COMPLEMENTARY; DNA, PLANT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PLANT STEMS; POPULUS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 24944538463     PISSN: 00220957     EISSN: None     Source Type: Journal    
DOI: 10.1093/jxb/eri221     Document Type: Article

References (53)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25, 3389-3402.
2. Arend M, Fromm J. 2003. Ultrastructural changes in cambial cell derivatives during xylem differentiation in poplar. Plant Biology 5, 255-264.
3. Bachem CWB, van der Hoeven RS, de Bruijn SM, Vreugdenhil D, Zabeau M, Visser RGF. 1996. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. The Plant Journal 9, 745-753.
4. Bäurle I, Laux T. 2003. Apical meristems: the plant's fountain of youth. BioEssays 25, 961-970.
5. Berrocal-Lobo M, Molina A, Solano R. 2002. Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. The Plant Journal 29, 23-32.
6. Boerjan W, Ralph J, Baucher M. 2003. Lignin biosynthesis. Annual Review of Plant Biology 54, 519-546.
7. Borden KLB. 2000. RING domains: master builders of molecular scaffolds? Journal of Molecular Biology 295, 1103-1112.
8. Brand U, Fletcher JC, Hobe M, Meyerowitz EM, Simon R. 2000. Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity. Science 289, 617-619.
9. Catesson AM, Funada R, Robert-Baby D, Quinet-Szély M, Chu-Bâ J, Goldberg R. 1994. Biochemical and cytochemical cell wall changes across the cambial zone. IAWA Journal 15, 91-101.
10. Chaffey N, Cholewa E, Regan S, Sundberg B. 2002. Secondary xylem development in Arabidopsis: a model for wood formation. Physiologia Plantarum 114, 594-600.
11. Cseke LJ, Zheng J, Podila GK. 2003. Characterization of PTM5 in aspen trees: a MADS-box gene expressed during woody vascular development. Gene 318, 55-67.
12. Demura T, Tashiro G, Horiguchi G, et al. 2002. Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells. Proceedings of the National Academy of Sciences, USA 99, 15794-15799.
13. Dengler NG. 2001. Regulation of vascular development. Journal of Plant Growth Regulation 20, 1-13.
14. Durrant WE, Rowland O, Piedras P, Hammond-Kosack KE, Jones JDG. 2000. cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. The Plant Cell 12, 963-977.
15. Esau K. 1965. Plant anatomy. New York: John Wiley and Sons Inc.
16. Fukuda H. 2004. Signals that control plant vascular cell differentiation. Nature Review Molecular Cellular Biology 5, 379-391.
17. Gray-Mitsumune M, Abe H, Takahashi J, Sundberg B, Mellerowicz EJ. 2004. Liquid phase fluorescence in situ RT-PCR analysis for gene expression analysis in woody stems. Plant Biology 6, 47-54.
18. Hawkins S, Samaj J, Lauvergeat V, Boudet A, Grima-Pettenati J. 1997. Cinnamyl alcohol dehydrogenase: identification of new sites of promoter activity in transgenic poplar. Plant Physiology 113, 321-325.
19. Hertzberg M, Aspeborg H, Schrader J, et al. 2001. A transcriptional roadmap to wood formation. Proceedings of the National Academy of Sciences, USA 98, 14732-14737.
20. Hertzberg M, Olsson O. 1998. Molecular characterization of a novel plant homeobox gene expressed in the maturing xylem zone of Populus tremulaxtremuloides. The Plant Journal 16, 285-295.
21. Iqbal M, Ghouse AKM. 1990. Cambial concept and organization. In: Iqbal M, ed. The vascular cambium. Taunton: Research Studies Press, 1-36.
22. Ivashikina N, Deeken R, Ache P, Kranz E, Pommerrenig B, Sauer N, Hedrich R. 2003. Isolation of AtSUC2 promoter-GFP-marked companion cells for patch-clamp studies and expression profiling. The Plant Journal 36, 931-945.
23. Jensen RB, Jensen KL, Jespersen HM, Skriver K. 1998. Widespread occurrence of a highly conserved RING-H2 zinc finger motif in the model plant Arabidopsis thaliana. FEBS Letters 436, 283-287.
24. Johansson AM, Wang C, Stenberg A, Hertzberg M, Little CHA, Olsson O. 2003. Characterization of a PttRSP18 promoter active in the vascular cambium region of hybrid aspen. Plant Molecular Biology 52, 317-329.
25. Joazeiro CAP, Weissman AM. 2000. RING finger proteins: mediators of ubiquitin activity. Cell 102, 549-552.
26. Karlowski WM, Hirsch AM. 2003. The over-expression of an alfalfa RING-H2 gene induces pleiotropic effects on plant growth and development. Plant Molecular Biology 52, 121-133.
27. Kenrick P, Crane PR. 1997. The origin and early evolution of plants on land. Nature 389, 33-39.
28. Kirch T, Simon R, Grünewald M, Werr W. 2003. The DORNRÖSCHEN/ENHANCER OF SHOOT REGENERATION1 gene of Arabidopsis acts in the control of meristem cell fate and lateral organ development. The Plant Cell 15, 694-705.
29. Kircher S, Ledger S, Hayashi H, Weisshaar B, Schäfer, Frohnmeyer H. 1998. CPRF4a, a novel plant bZIP protein of the CPRF family: comparative analyses of light-dependent expression, post-transcriptional regulation, nuclear import and heterodimerization. Molecular and General Genetics 257, 595-605.
30. Ko JH, Han KH. 2004. Arabidopsis whole-transcriptome profiling defines the features of coordinated regulations that occur during secondary growth. Plant Molecular Biology 55, 433-453.
31. Ko JH, Han KH, Park S, Yang J. 2004. Plant body weight-induced secondary growth in Arabidopsis and its transcription phenotype revealed by whole-transcriptome profiling. Plant Physiology 135, 1069-1083.
32. Lachaud S, Catesson AM, Bonnemain JL. 1999. Structure and functions of the vascular cambium. Comptes Rendus de l'Académie des Sciences de Paris 322, 633-650.
33. Lauvergeat V, Rech P, Jauneau A, Guez C, Coutos-Thevenot P, Grima-Pettenati J. 2002. The vascular expression pattern directed by the Eucalyptus gunnii cinnamyl alcohol dehydrogenase EgCAD2 promoter is conserved among woody and herbaceous plant species. Plant Molecular Biology 50, 497-509.
34. Martínez-García M, Garcidueñas-Piña C, Guzmán P. 1996. Gene isolation in Arabidopsis thaliana by conditional overexpression of cDNAs toxic to Saccharomyces cerevisiae: identification of a novel early response zinc-finger gene. Molecular and General Genetics 252, 587-596.
35. Mellerowicz EJ, Baucher M, Sundberg B, Boerjan W. 2001. Unravelling cell wall formation in the woody dicot stem. Plant Molecular Biology 47, 239-247.
36. Milioni D, Sado PE, Stacey N, Roberts K, McCann MC. 2002. Early gene expression associated with the commitment and differentiation of a plant tracheary element is revealed by cDNA-amplified fragment length polymorphism analysis. The Plant Cell 14, 2813-2824.
37. Pesquet E, Barbier O, Ranocha P, Jauneau A, Goffner D. 2004. Multiple gene detection by in situ RT-PCR in isolated plant cells and tissues. The Plant Journal 39, 947-959.
38. Reyes JC, Hennig L, Gruissem W. 2002. Chromatin-remodeling and memory factors. New regulators of plant development. Plant Physiology 130, 1090-1101.
39. Riechmann JL. 2002. Transcriptional regulation: a genomic overview. In: Somerville CR, Meyerowitz EM, eds. The Arabidopsis book. Rockville: American Society of Plant Biologists, doi/ 10.1199/tab.0085, http://www.aspb.org/ publications/arabidopsis/.
40. Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki K. 2002. DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochemical and Biophysical Research Communications 290, 998-1009.
41. Salinas-Mondragón R, Garcidueñas-Piña C, Guzmán P. 1999. Early elicitor induction in members of a novel multigene family coding for highly related RING-H2 proteins in Arabidopsis thaliana. Plant Molecular Biology 40, 579-590.
42. Saurin AJ, Borden KLB, Boddy MN, Freemont PS. 1996. Does this have a familiar RING? Trends in Biochemical Sciences 21, 208-214.
43. Schoof H, Lenhard M, Haecker A, Mayer KFX, Jürgens G, Laux T. 2000. The stem cell population of Arabidopsis shoot meristem is maintained by a regulatory loop between the CLAVATA and WUSCHEL genes. Cell 100, 635-644.
44. Schrader J, Nilsson J, Mellerowicz E, Berglund A, Nilsson P, Hertzberg M, Sandberg G. 2004. A high-resolution transcript profile across the wood-forming meristem of poplar identifies potential regulators of cambial stem cell identity. The Plant Cell 16, 2278-2292.
45. Sterky F, Bhalerao RR, Unneberg P, et al. 2004. A Populus EST resource for plant functional genomics. Proceedings of the National Academy of Sciences, USA 101, 13951-13956.
46. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
47. Tournier B, Sanchez-Ballesta MT, Jones B, Pesquet E, Regad F, Latché A, Pech JC, Bouzayen M. 2003. New members of the tomato ERF family show specific expression pattern and diverse DNA-binding capacity to the GCC box element. FEBS Letters 550, 149-154.
48. Verwoerd TC, Dekker BMM, Hoekema A. 1989. A small-scale procedure for rapid isolation of plant RNAs. Nucleic Acids Research 17, 2362.
49. Vilaine F, Palauqui JC, Amselem J, Kusiak C, Lemoine R, Dinant S. 2003. Towards deciphering phloem: a transcriptome analysis of the phloem of Apium graveolens. The Plant Journal 36, 67-81.
50. Wang H, Huang Z, Chen Q, Zhang Z, Zhang H, Wu Y, Huang D, Huang R. 2004. Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance. Plant Molecular Biology 55, 183-192.
51. Whetten R, Sun YH, Zhang Y, Sederoff R. 2001. Functional genomics and cell wall biosynthesis in loblolly pine. Plant Molecular Biology 47, 275-291.
52. Yang J, Park S, Kamdem DP, Keathley DE, Retzel E, Paule C, Kapur V, Han KH. 2003. Novel gene expression profiles define the metabolic and physiological processes characteristic of wood and its extractive formation in a hardwood tree species, Robinia pseudoacacia. Plant Molecular Biology 52, 935-956.
53. Zhao C, Johnson BJ, Kositsup B, Beers EP. 2000. Exploiting secondary growth in Arabidopsis. Construction of xylem and bark cDNA libraries and cloning of three xylem endopeptidases. Plant Physiology 123, 1185-1196.