Expression profiling of five different xenobiotics using a Caenorhabditis elegans whole genome microarray

Chemosphere

Volumn 61, Issue 2, 2005, Pages 229-237

  Reichert, Kerstin ^a   Menzel, Ralph ^b  

^a FREIE UNIVERSITÄT BERLIN   (Germany)

^b LEIBNIZ INSTITUTE OF FRESHWATER ECOLOGY AND INLAND FISHERIES   (Germany)

Author keywords

C. elegans; DNA microarray; Gene expression; Xenobiotics

Indexed keywords

COLLAGEN; DATA REDUCTION; DNA; ENZYME KINETICS;

C. ELEGANS; DNA MICROARRAY; GENE EXPRESSIONS; GLUTATHIONE S-TRANSFERASES (GST); XENOBIOTICS;

GENES;

ATRAZINE; BETA NAPHTHOFLAVONE; CARBOXYLESTERASE; CLOFIBRATE; COLLAGENASE; CYTOCHROME P450; DIETHYLSTILBESTROL; FLUORANTHENE; GLUCURONOSYLTRANSFERASE; GLUTATHIONE TRANSFERASE; LECTIN; XENOBIOTIC AGENT;

ECOTOXICOLOGY; SOIL FAUNA;

ARTICLE; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; DNA MICROARRAY; DOWN REGULATION; ECOTOXICOLOGY; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE INDUCTION; NEMATODE; NONHUMAN; UPREGULATION;

ANIMALIA; CAENORHABDITIS ELEGANS;

EID: 24944481659     PISSN: 00456535     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemosphere.2005.01.077     Document Type: Article

References (45)

1. G.L. Anderson, W.A. Boyd, and P.L. Williams Assessment of sublethal endpoints for toxicity testing with the nematode Caenorhabditis elegans Environ. Toxicol. Chem. 20 2001 833 838
2. M.J. Bartosiewicz, D. Jenkins, S. Penn, J. Emery, and A. Buckpitt Unique gene expression patterns in liver and kidney associated with exposure to chemical toxicants JPET 297 2001 895 905
3. P.G. Board, G. Chelvanayagam, L.S. Jermiin, N. Tetlow, H.-F. Tzeng, and M.W. Anders Identification of novel glutathione transferases and polymorphic variants by expressed sequence tag database analysis Drug Metab. Dispos. 29 2001 544 547
4. S. Brenner The genetics of Caenorhabditis elegans Genetics 77 1974 71 94
5. E.P.M. Candido, D. Jones, D.K. Dixon, R.W. Graham, R.H. Russnak, and R.J. Kay Structure, organization, and expression of the 16-kDa heat shock gene family of Caenorhabditis elegans Genome 31 1989 690 697
6. P. Chomczynski, and N. Sacchi Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal. Biochem. 162 1 1987 156 159
7. H.A. Coller, C. Grandori, P. Tamayo, T. Colbert, E.S. Lander, and R.N. Eisenman Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signalling, and adhesion PNAS 97 2000 3260 3265
8. N. Custodia, S.J. Won, A. Novillo, M. Wieland, C. Li, and I.P. Callard Caenorhabditis elegans as an environmental monitor using DNA microarray analysis Ann. NY Acad. Sci. 948 2001 32 42
9. H.E. David, A.S. Dawe, D.I. de Pomerai, D. Jones, E.P.M. Candido, and C. Daniells Construction and evaluation of a transgenic hsp16-GFP-lacZ Caenorhabditis elegans strain for environmental monitoring Environ. Toxicol. Chem. 22 2003 111 118
10. S.G. Donkin, and D.B. Dusenbery A soil toxicity test using the nematode Caenorhabditis elegans and an effective method of recovery Arch. Environ. Contam. Toxicol. 25 1993 145 151
11. S.W. Emmons, M.R. Klass, and D. Hirsh Analysis of the constancy of DNA sequences during development and evolution of the nematode C. elegans PNAS 76 1979 1333 1337
12. D. Gerhold, M. Lu, J. Xu, C. Austin, C.T. Caskey, and T. Rushmore Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays Physiol. Genomics 5 2001 161 170
13. P. Goldstein, and L. Magnano Effects of dimethyl sulphoxide on early gametogenesis in Caenorhabditis elegans: ultrastructural aberrations and loss of synaptonemal complexes from pachytene nuclei Cytobios 56 1988 45 57
14. M.F.P. Heschl, and D.L. Baillie Characterization of the hsp70 multigene family of Caenorhabditis elegans DNA 8 1989 233 243
15. D.R. Hitchcock, M.C. Black, and P.L. Williams Investigations into using the nematode Caenorhabditis elegans for municipal and industrial wastewater toxicity testing Arch. Environ. Contam. Toxicol. 33 1997 252 260
16. S. Höss, T. Henschel, M. Haitzer, W. Traunspurger, and C.E.W. Steinberg Toxicity of cadmium to Caenorhabditis elegans (Nematoda) in whole sediment and pore water-the ambiguous role of organic matter Environ. Toxicol. Chem. 20 2001 2794 2801
17. D.P. Jasmer, J. Roth, and P.J. Myler Cathepsin B-like cysteine proteases and Caenorhabditis elegans homologues dominate gene products expressed in adult Haemonchus contortus intestine Mol. Biochem. Parasitol. 116, 2001 159 169
18. M. Jiang, J. Ryu, M. Kiraly, K. Duke, V. Reinke, and S.K. Kim Genome-wide analysis of developmental and sex-regulated gene expression profiles in Caenorhabditis elegans PNAS 98 2001 218 223
19. I.L. Johnstone The cuticle of the nematode Caenorhabditis elegans: a complex collagen structure BioEssays 16 1994 171 178
20. I.L. Johnstone Cuticle collagen genes expression in Caenorhabditis elegans Trends Genet. 16 2000 21 27
21. D. Jones, E.G. Stringham, S.L. Babich, and E.P. Candido Transgenic strains of the nematode C. elegans in biomonitoring and toxicology: effects of captan and related compounds on the stress response Toxicology 109 1996 119 127
22. S.K. Kim, J. Lund, M. Kiraly, K. Duke, M. Jiang, and J.M. Stuart A gene expression map for Caenorhabditis elegans Science 293 2001 2087 2092
23. C.D. King, G.R. Rios, M.D. Green, and T.R. Tephly UDP- glucoronosyltransferases Curr. Drug Metab. 1 2000 143 161
24. S. Kohra, N. Tominaga, Y. Mitsui, Y. Takao, Y. Ishibashi, and K. Arizono Determination of a screening system of endocrine disruptors by the induction of vitellogenine mRNA in C. elegans larvae J. Health Sci. 45 1999 37
25. J.M. Kramer Structure and functions of collagens in Caenorhabditis elegans FASEB J. 8 1994 329 336
26. P. Larkin, L.C. Folmar, M.J. Hemmer, A.J. Poston, and N.D. Denslow Expression profiling of estrogenic compounds using a sheepshead minnow cDNA macroarray EHP Toxicogenomics 111 2003 29 36
27. V.H.-C. Liao, and H. Freedman Cadmium-regulated genes from the nematode Caenorhabditis elegans J. Biol. Chem. 273 1998 31962 31970
28. J. Lund, P. Tedesco, K. Duke, J. Wang, S.K. Kim, and T.E. Johnson Transcriptional profile of aging in C. elegans Curr. Biol. 12 2002 1566 1573
29. G.V. Mallo, C.L. Kurz, C. Couillaut, N. Pujol, S. Granjeaud, and Y. Kohara Inducible antibacterial defense system in C. elegans Curr. Biol. 12 2002 1209 1214
30. J.S. McClain, J.T. Oris, G.A. Burton Jr., and D. Lattier Laboratory and field validation of multiple molecular biomarkers of contaminant exposure in rainbow trout (Oncorhynchus mykiss) Environ. Toxicol. Chem. 22 2002 361 370
31. R. Menzel, T. Bogart, and R. Achazi A systematic gene expression screen of Caenorhabditis elegans cytochrome P450 genes reveals CYP35 as strongly xenobiotic inducible Arch. Biochem. Biophys. 395 2001 158 168
32. M.H.A.Z. Mutwakil, J.P. Reader, D.M. Holdich, P.R. Smithurst, E.P.M. Candido, and D. Jones Use of stress-inducible transgenic nematodes as biomarkers of heavy metal pollution in water samples from an English river system Arch. Environ. Contam. Toxicol. 32 1997 146 153
33. J.B. Rand, and C.D. Johnson Genetic pharmacology: interactions between drugs and gene products in Caenorhabditis elegans H.F. Epstein D.C. Shakes Methods in cell biology. Caenorhabditis elegans: modern biological analysis of an organism vol. 48 1995 Academic Press Inc. San Diego 187 204
34. V. Reinke, H.E. Smith, J. Nance, J. Wang, C. Van Doren, and R. Begley A global profile of germline gene expression in C. elegans Mol. Cell 6 2000 605 616
35. T. Satoh, and M. Hosokawa The mammalian carboxylesterases: from molecules to functions Annu. Rev. Pharmacol. Toxicol. 38 1998 257 288
36. E. Schuetz Induction of cytochromes P450 Curr. Drug Metab. 2 2001 139 147
37. G. Sherlock, T. Hernandez-Boussard, A. Kasarskis, G. Binkley, J.C. Matese, and S.S. Dwight The Stanford microarray database Nucleic Acids Res. 29 2001 152 155
38. S.A. Sheweita Drug-metabolizing enzymes: mechanisms and functions Curr. Drug Metab. 1 2000 107 132
39. Sulston, J.E., Hodgkin, J., 1988. In: Wood, W.B., The Community of C. elegans Researchers (Eds.), The Nematode Caenorhabditis elegans. CSHL Press, New York, pp. 587-606.
40. W.N. Tawe, M.L. Eschbach, R.D. Walter, and K. Henkle-Dührsen Identification of stress-responsive genes in Caenorhabditis elegans using RT-PCR differential display Nucleic Acids Res. 26 1998 1621 1627
41. The C. elegans Sequencing Consortium, 1998. Genome sequence of the nematode Caenorhabditis elegans. A platform for investigating biology. Science 282, 2012-2018.
42. W. Traunspurger, M. Haitzer, S. Höss, S. Beier, W. Ahlf, and C. Steinberg Ecotoxicological assessment of aquatic sediments with Caenorhabditis elegans (Nematoda)-a method for testing in liquid medium and whole sediment samples Environ. Toxicol. Chem. 16 1997 245 250
43. 2 and nematodes Ecotoxicol. Environ. Saf. 18 1988 181 190
44. M. Vondracek, D.A. Weaver, Z. Sarang, J.J. Hedberg, J.C. Willey, L. Wärngärd, and R.C. Grafström Transcript profiling of enzymes involved in detoxification of xenobiotic and reactive oxygen in human normal and simian virus 40 t antigen-immortalized oral keratinocytes Int. J. Cancer 99 2002 776 782
45. J. Wang, and S.K. Kim Global analysis of dauer gene expression in Caenorhabditis elegans Development 130 2003 1621 1634