메뉴 건너뛰기




Volumn 43, Issue 20, 2004, Pages 6091-6100

Crystal structure of human phosphodiesterase 3B: Atomic basis for substrate and inhibitor specificity

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; CRYSTAL STRUCTURE; ENZYMES; METABOLISM; MOLECULAR BIOLOGY;

EID: 2442700405     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi049868i     Document Type: Article
Times cited : (111)

References (32)
  • 1
    • 0028802726 scopus 로고
    • Cyclic nucleotide phosphodiesterases: Functional implications of multiple isoforms
    • Beavo, J. A. (1995) Cyclic Nucleotide phosphodiesterases: functional implications of multiple isoforms, Physiol. Rev. 75, 725-743.
    • (1995) Physiol. Rev. , vol.75 , pp. 725-743
    • Beavo, J.A.1
  • 2
  • 3
    • 0028949423 scopus 로고
    • Distinctive anatomical patterns of gene expression for cGMP-inhibited cyclic nucleotide phosphodiesterases
    • Reinhardt, R. R., Chin, E., Zhou, J., Taira, M., Murata, T., Manganiello, V. C., and Bondy, C. A. (1995) Distinctive anatomical patterns of gene expression for cGMP-inhibited cyclic nucleotide phosphodiesterases, J. Clin. Invest. 95, 1528-1538.
    • (1995) J. Clin. Invest. , vol.95 , pp. 1528-1538
    • Reinhardt, R.R.1    Chin, E.2    Zhou, J.3    Taira, M.4    Murata, T.5    Manganiello, V.C.6    Bondy, C.A.7
  • 4
    • 0037020258 scopus 로고    scopus 로고
    • Important role of phosphodiesterase 3B for the stimulatory action of cAMP on pancreatic beta-cell exocytosis and release of insulin
    • Harndahl, L., Jing, X.-J., Iversson, R., Degerman, E., Ahren, B., Manganiello, V. C., Renstrom, E., and Stenson Holst, L. (2002) Important role of phosphodiesterase 3B for the stimulatory action of cAMP on pancreatic beta-cell exocytosis and release of insulin, J. Biol. Chem. 277, 37446-37455.
    • (2002) J. Biol. Chem. , vol.277 , pp. 37446-37455
    • Harndahl, L.1    Jing, X.-J.2    Iversson, R.3    Degerman, E.4    Ahren, B.5    Manganiello, V.C.6    Renstrom, E.7    Stenson Holst, L.8
  • 5
    • 0021218957 scopus 로고
    • Selective effects of phosphodiesterase inhibitors on different phosphodiesterases, adenosine 3′,5′-monophosphate metabolism, and lipolysis in 3T3-L1 adipocytes
    • Elks, M. L., and Manganiello, V. C. (1984) Selective effects of phosphodiesterase inhibitors on different phosphodiesterases, adenosine 3′,5′-monophosphate metabolism, and lipolysis in 3T3-L1 adipocytes, Endocrinology 115, 1262-1268.
    • (1984) Endocrinology , vol.115 , pp. 1262-1268
    • Elks, M.L.1    Manganiello, V.C.2
  • 6
    • 80052015104 scopus 로고    scopus 로고
    • The adipocyte cGMP-inhibited cyclic nucleotide phosphodiesterase (PDE3B) as a target for lipolytic and thermogenic agents for the treatment of obesity
    • Synder, P. B. (1999) The adipocyte cGMP-inhibited cyclic nucleotide phosphodiesterase (PDE3B) as a target for lipolytic and thermogenic agents for the treatment of obesity, Emerging Ther. Targets 3, 587-599.
    • (1999) Emerging Ther. Targets , vol.3 , pp. 587-599
    • Synder, P.B.1
  • 7
    • 0031634909 scopus 로고    scopus 로고
    • Expression and characterization of deletion recombinants of two cGMP-inhibited cyclic nucleotide phosphodiesterases (PDE-3)
    • He, R., Komas, N., Ekholm, D., Murata, T., Taira, M., Hockman, S., Dergerman, E., and Manganiello, V. C. (1998) Expression and characterization of deletion recombinants of two cGMP-inhibited cyclic nucleotide phosphodiesterases (PDE-3), Cell Biochem. Biophys. 29, 89-111.
    • (1998) Cell Biochem. Biophys. , vol.29 , pp. 89-111
    • He, R.1    Komas, N.2    Ekholm, D.3    Murata, T.4    Taira, M.5    Hockman, S.6    Dergerman, E.7    Manganiello, V.C.8
  • 8
    • 17744398004 scopus 로고    scopus 로고
    • Membrane localization of cyclic nucleotide phosphodiesterase 3 (PDE3). Two N-terminal domains are required for the efficient targeting to, and association of, PDE3 with endoplasmic reticulum
    • Shakur, Y., Takeda, K., Kenan, Y., Yu, Z. X., Rena, G., Brandt, D., Houslay, M. D., Degerman, E., Ferrans, V. J., and Manganiello, V. C. (2000) Membrane localization of cyclic nucleotide phosphodiesterase 3 (PDE3). Two N-terminal domains are required for the efficient targeting to, and association of, PDE3 with endoplasmic reticulum, J. Biol. Chem. 275, 38749-38761.
    • (2000) J. Biol. Chem. , vol.275 , pp. 38749-38761
    • Shakur, Y.1    Takeda, K.2    Kenan, Y.3    Yu, Z.X.4    Rena, G.5    Brandt, D.6    Houslay, M.D.7    Degerman, E.8    Ferrans, V.J.9    Manganiello, V.C.10
  • 12
    • 0037163858 scopus 로고    scopus 로고
    • Crystal structure of phosphodiesterase 4D and inhibitor complex
    • Lee, M. E., Markowitz, J., Lee, J. O., and Lee, H. (2002) Crystal structure of phosphodiesterase 4D and inhibitor complex, FEBS Lett. 530, 53-58.
    • (2002) FEBS Lett. , vol.530 , pp. 53-58
    • Lee, M.E.1    Markowitz, J.2    Lee, J.O.3    Lee, H.4
  • 13
    • 0242401840 scopus 로고    scopus 로고
    • The crystal structure of AMP-bound PDE4 suggests a mechanism for phosphodiesterase catalysis
    • Huai, Q., Colicelli, J., and Ke, H. (2003) The crystal structure of AMP-bound PDE4 suggests a mechanism for phosphodiesterase catalysis, Biochemistry 42, 13220-13226.
    • (2003) Biochemistry , vol.42 , pp. 13220-13226
    • Huai, Q.1    Colicelli, J.2    Ke, H.3
  • 15
    • 2442684926 scopus 로고    scopus 로고
    • Crystallization and preliminary X-ray diffraction analysis of the catalytic domain of recombinant human phosphodiesterase 3B
    • Patel, S. B., Varnerin, J. P., Tota, M. R., Edmondson, S. D., Parmee, E. R., Becker, J. W., and Scapin, G. (2003) Crystallization and preliminary X-ray diffraction analysis of the catalytic domain of recombinant human phosphodiesterase 3B, Acta Crystallogr. D60, 169-171.
    • (2003) Acta Crystallogr. D , vol.60 , pp. 169-171
    • Patel, S.B.1    Varnerin, J.P.2    Tota, M.R.3    Edmondson, S.D.4    Parmee, E.R.5    Becker, J.W.6    Scapin, G.7
  • 16
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode, Methods Enzymol. 276, 307-326.
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 17
    • 0000560808 scopus 로고    scopus 로고
    • MOLREP: An automated program for molecular replacement
    • Vagin, A., and Teplyakov, A. (1997) MOLREP: an automated program for molecular replacement, J. Appl. Crystallogr. 30, 1022-1025.
    • (1997) J. Appl. Crystallogr. , vol.30 , pp. 1022-1025
    • Vagin, A.1    Teplyakov, A.2
  • 18
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project, N. (1994) The CCP4 suite: programs for protein crystallography, Acta Crystallogr. D50, 760-763.
    • (1994) Acta Crystallogr. D , vol.50 , pp. 760-763
  • 19
    • 0030841587 scopus 로고    scopus 로고
    • Electron density map interpretation
    • Jones, A. T., and Kjeldgaard, M. (1997) Electron density map interpretation, Methods Enzymol. 277, 173-208.
    • (1997) Methods Enzymol. , vol.277 , pp. 173-208
    • Jones, A.T.1    Kjeldgaard, M.2
  • 21
    • 0030957594 scopus 로고    scopus 로고
    • Structure, localization, and regulation of cGMP-inhibited phosphodiesterase (PDE3)
    • Degerman, E., Belfrage, P., and Manganiello, V. C. (1997) Structure, localization, and regulation of cGMP-inhibited phosphodiesterase (PDE3), J. Biol. Chem. 272, 6823-6826.
    • (1997) J. Biol. Chem. , vol.272 , pp. 6823-6826
    • Degerman, E.1    Belfrage, P.2    Manganiello, V.C.3
  • 23
    • 0028788430 scopus 로고
    • Divalent metal cation requirement and possible classification of cGMP-inhibited phosphodiesterase as a metallohydrolase
    • Omburo, G. A., Brickus, T., Ghazaleh, F. A., and Colman, R. W. (1995) Divalent metal cation requirement and possible classification of cGMP-inhibited phosphodiesterase as a metallohydrolase, Arch. Biochem. Biophys. 323, 105.
    • (1995) Arch. Biochem. Biophys. , vol.323 , pp. 105
    • Omburo, G.A.1    Brickus, T.2    Ghazaleh, F.A.3    Colman, R.W.4
  • 24
    • 0028070403 scopus 로고
    • Zinc interactions and conserved motifs of the cGMP-binding cGMP specific phosphodiesterase suggest that it is a zinc hydrolase
    • Francis, S. H., Colbran, J. L., McAllister-Lucas, L. M., and Corbin, J. D. (1994) Zinc interactions and conserved motifs of the cGMP-binding cGMP specific phosphodiesterase suggest that it is a zinc hydrolase, J. Biol. Chem. 269, 22477-22480.
    • (1994) J. Biol. Chem. , vol.269 , pp. 22477-22480
    • Francis, S.H.1    Colbran, J.L.2    McAllister-Lucas, L.M.3    Corbin, J.D.4
  • 25
    • 0032406883 scopus 로고    scopus 로고
    • Partial characterization of the active site human platelet cAMP phosphodiesterase, PDE3A, by site-directed mutagenesis
    • Cheung, P. P., Yu, L., Zhang, H., and Colman, R. W. (1998) Partial characterization of the active site human platelet cAMP phosphodiesterase, PDE3A, by site-directed mutagenesis, Arch. Biochem. Biophys. 360, 99-104.
    • (1998) Arch. Biochem. Biophys. , vol.360 , pp. 99-104
    • Cheung, P.P.1    Yu, L.2    Zhang, H.3    Colman, R.W.4
  • 26
    • 0034210249 scopus 로고    scopus 로고
    • Conserved amino acids in metal-binding motifs of PDE3A are involved in substrate and inhibitor binding
    • Zhang, W., and Colman, R. W. (2000) Conserved amino acids in metal-binding motifs of PDE3A are involved in substrate and inhibitor binding, Blood 95, 3380-3386.
    • (2000) Blood , vol.95 , pp. 3380-3386
    • Zhang, W.1    Colman, R.W.2
  • 27
    • 0034924752 scopus 로고    scopus 로고
    • Identification of overlapping but distinct cAMP and cGMP interaction sites with cyclic nucleotide phosphodiesterase 3A by site-directed mutagenesis and molecular modeling based on crystalline PDE4B
    • Zhang, W., Ke, H. M., Tretiakova, A. P., Jameson, B., and Colman, R. W. (2001) Identification of overlapping but distinct cAMP and cGMP interaction sites with cyclic nucleotide phosphodiesterase 3A by site-directed mutagenesis and molecular modeling based on crystalline PDE4B, Protein Sci. 10, 1481-1489.
    • (2001) Protein Sci. , vol.10 , pp. 1481-1489
    • Zhang, W.1    Ke, H.M.2    Tretiakova, A.P.3    Jameson, B.4    Colman, R.W.5
  • 28
    • 0036765991 scopus 로고    scopus 로고
    • Identification of interaction sites of cyclic nucleotide phosphodiesterase type 3A with milrinone and cilostazol using molecular modeling and site-directed mutagenesis
    • Zhang, W., Ke, H., and Colman, R. W. (2002) Identification of interaction sites of cyclic nucleotide phosphodiesterase type 3A with milrinone and cilostazol using molecular modeling and site-directed mutagenesis, Mol. Pharmacol. 62, 514-520.
    • (2002) Mol. Pharmacol. , vol.62 , pp. 514-520
    • Zhang, W.1    Ke, H.2    Colman, R.W.3
  • 30
  • 31
    • 1842581748 scopus 로고    scopus 로고
    • Crystal Structures of Phosphodiesterases 4 and 5 in Complex with Inhibitor 3-Isobutyl-1-methylxanthine Suggest a Conformation Determinant of Inhibitor Selectivity
    • Huai, Q., Liu, Y., Francis, S. H., Corbin, J. D., and Ke, H. (2004) Crystal Structures of Phosphodiesterases 4 and 5 in Complex with Inhibitor 3-Isobutyl-1-methylxanthine Suggest a Conformation Determinant of Inhibitor Selectivity. J. Biol. Chem. 279, 13095-13101.
    • (2004) J. Biol. Chem. , vol.279 , pp. 13095-13101
    • Huai, Q.1    Liu, Y.2    Francis, S.H.3    Corbin, J.D.4    Ke, H.5
  • 32
    • 1442323778 scopus 로고    scopus 로고
    • Crystal structures of the catalytic domain of phosphodiesterase 4B complexed with AMP, 8-Br-AMP, and rolipram
    • Xu, R. X., Rocque, W. J., Lambert, M. H., Vanderwall, D. E., Luther, M. A., and Nolte, R. T. (2004) Crystal Structures of the Catalytic Domain of Phosphodiesterase 4B Complexed with AMP, 8-Br-AMP, and Rolipram. J. Mol. Biol. 337, 355-365.
    • (2004) J. Mol. Biol. , vol.337 , pp. 355-365
    • Xu, R.X.1    Rocque, W.J.2    Lambert, M.H.3    Vanderwall, D.E.4    Luther, M.A.5    Nolte, R.T.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.