-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0029770711
-
Halomonas desiderata sp. nov., a new alkalophilic, halotolerant and denitrifying bacterium isolated from a municipal sewage works
-
Berendes, F., G. Gottschalk, E. Heine-Dobbernack, E. R. B. Moore, and B. J. Tindall. 1996. Halomonas desiderata sp. nov., a new alkalophilic, halotolerant and denitrifying bacterium isolated from a municipal sewage works. Syst. Appl. Microbiol. 19:158-167.
-
(1996)
Syst. Appl. Microbiol.
, vol.19
, pp. 158-167
-
-
Berendes, F.1
Gottschalk, G.2
Heine-Dobbernack, E.3
Moore, E.R.B.4
Tindall, B.J.5
-
3
-
-
0031687820
-
Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
-
Braker, G., A. Fesefeldt, and K. Witzel. 1998. Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl. Environ. Microbiol. 64:3769-3775.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3769-3775
-
-
Braker, G.1
Fesefeldt, A.2
Witzel, K.3
-
4
-
-
0035319656
-
Community structure of denitrifiers, Bacteria, and Archaea along redox gradients in Pacific northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes
-
Braker, G., H. L. Ayala-del-Río, A. H. Devol, A. Fesefeldt, and J. M. Tiedje. 2001. Community structure of denitrifiers, Bacteria, and Archaea along redox gradients in Pacific northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Appl. Environ. Microbiol. 67:1893-1901.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1893-1901
-
-
Braker, G.1
Ayala-del-Río, H.L.2
Devol, A.H.3
Fesefeldt, A.4
Tiedje, J.M.5
-
5
-
-
0034016758
-
Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities
-
Braker, G., J. Zhou, L. Wu, A. H. Devol, and J. M. Tiedje. 2000. Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities. Appl. Environ. Microbiol. 66:2096-2104.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2096-2104
-
-
Braker, G.1
Zhou, J.2
Wu, L.3
Devol, A.H.4
Tiedje, J.M.5
-
6
-
-
0024511140
-
A halophilic denitrifier, Bacillus halodenitrificans sp. nov.
-
Denariaz, G., W. J. Payne, and J. Le Gall. 1989. A halophilic denitrifier, Bacillus halodenitrificans sp. nov. Int. J. Syst. Bacteriol. 39:145-151.
-
(1989)
Int. J. Syst. Bacteriol.
, vol.39
, pp. 145-151
-
-
Denariaz, G.1
Payne, W.J.2
Le Gall, J.3
-
7
-
-
0030760841
-
Evolutionary divergence and salinity-mediated selection in halophilic archaea
-
Dennis, P. P., and L. C. Shimmin. 1997. Evolutionary divergence and salinity-mediated selection in halophilic archaea. Microbiol. Mol. Biol. Rev. 61: 90-104.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 90-104
-
-
Dennis, P.P.1
Shimmin, L.C.2
-
8
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
9
-
-
0032964425
-
PCR detection of genes encoding nitrite reductase in denitrifying bacteria
-
Hallin, S., and P.-E.Lindgren. 1999. PCR detection of genes encoding nitrite reductase in denitrifying bacteria. Appl. Environ. Microbiol. 65:1652-1657.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1652-1657
-
-
Hallin, S.1
Lindgren, P.-E.2
-
10
-
-
0032934360
-
1 nitrite reductase) in Pseudomonas stutzeri during the transition from aerobic respiration to denitrification: Evidence for a denitrification-specific nitrate- and nitrite-responsive regulatory system
-
1 nitrite reductase) in Pseudomonas stutzeri during the transition from aerobic respiration to denitrification: evidence for a denitrification-specific nitrate- and nitrite-responsive regulatory system. J. Bacteriol. 181:161-166.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 161-166
-
-
Härting, E.1
Zumft, W.G.2
-
11
-
-
0034861406
-
Nitrogen removal from industrial wastewater discharged from metal recovery processes
-
Hirata, A., Y. Nakamura, and S. Tsuneda. 2001. Nitrogen removal from industrial wastewater discharged from metal recovery processes. Water Sci. Technol. 44:171-180.
-
(2001)
Water Sci. Technol.
, vol.44
, pp. 171-180
-
-
Hirata, A.1
Nakamura, Y.2
Tsuneda, S.3
-
12
-
-
0034967182
-
Purification, characterization, and genetic analysis of Cu-containing dissimilatory nitrite reductase from a denitrifying halophilic archaeon, Haloarcula marismortui
-
Ichiki, H., Y. Tanaka, K. Mochizuki, K. Yoshimatsu. T. Sakurai, and T. Fujiwara. 2001. Purification, characterization, and genetic analysis of Cu-containing dissimilatory nitrite reductase from a denitrifying halophilic archaeon, Haloarcula marismortui. J. Bacteriol. 183:4149-4156.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 4149-4156
-
-
Ichiki, H.1
Tanaka, Y.2
Mochizuki, K.3
Yoshimatsu, K.4
Sakurai, T.5
Fujiwara, T.6
-
13
-
-
0042285649
-
Bacterial diversity in a marine methanol-fed denitrification reactor at the Montreal biodome, Canada
-
Labbe, N., P. Juteau, S. Parent, and R. Villemur. 2003. Bacterial diversity in a marine methanol-fed denitrification reactor at the Montreal biodome, Canada. Microb. Ecol. 46:12-21.
-
(2003)
Microb. Ecol.
, vol.46
, pp. 12-21
-
-
Labbe, N.1
Juteau, P.2
Parent, S.3
Villemur, R.4
-
14
-
-
0032986790
-
Combination of fluorescent in situ hybridization and microautoradiography - A new tool for structure-function analyses in microbial ecology
-
Lee, N., P. H. Nielsen, K. H. Andreasen, S. Juretschko, J. L. Nielsen, K.-H. Schleifer, and M. Wagner. 1999. Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65:1289-1297.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1289-1297
-
-
Lee, N.1
Nielsen, P.H.2
Andreasen, K.H.3
Juretschko, S.4
Nielsen, J.L.5
Schleifer, K.-H.6
Wagner, M.7
-
15
-
-
0038654477
-
Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico
-
Liu, X., S. M. Tiquia, G. Holguin, L. Wu, S. C. Nold, A. H. Devol, K. Luo, A. V. Palumbo, J. M. Tiedje, and J. Zhou. 2003. Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico. Appl. Environ. Microbiol. 69: 3549-3560.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3549-3560
-
-
Liu, X.1
Tiquia, S.M.2
Holguin, G.3
Wu, L.4
Nold, S.C.5
Devol, A.H.6
Luo, K.7
Palumbo, A.V.8
Tiedje, J.M.9
Zhou, J.10
-
16
-
-
0002542478
-
Information theory in ecology
-
Margalef, R. 1958. Information theory in ecology. Gen. Syst. 3:36-71.
-
(1958)
Gen. Syst.
, vol.3
, pp. 36-71
-
-
Margalef, R.1
-
17
-
-
0036793715
-
Detection and diversity of expressed denitrification genes in estuarine sediment after reverse transcription-PCR amplification from mRNA
-
Nogales, B., K. N. Timmis, D. B. Nedwell, and A. M. Osborn. 2002. Detection and diversity of expressed denitrification genes in estuarine sediment after reverse transcription-PCR amplification from mRNA. Appl. Environ. Microbiol. 68:5017-5025.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5017-5025
-
-
Nogales, B.1
Timmis, K.N.2
Nedwell, D.B.3
Osborn, A.M.4
-
18
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page, R. D. M. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
19
-
-
0036203309
-
Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils
-
Priemé, A., G. Braker, and J. M. Tiedje. 2002. Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Appl. Environ. Microbiol. 68:1893-1900.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1893-1900
-
-
Priemé, A.1
Braker, G.2
Tiedje, J.M.3
-
20
-
-
0034628432
-
Stable-isotope probing as a tool in microbial ecology
-
Radajewski, S., P. Ineson, N. R. Parekh, and J. C. Murrell. 2000. Stable-isotope probing as a tool in microbial ecology. Nature 403:646-649.
-
(2000)
Nature
, vol.403
, pp. 646-649
-
-
Radajewski, S.1
Ineson, P.2
Parekh, N.R.3
Murrell, J.C.4
-
21
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
22
-
-
0032080514
-
Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments
-
Scala, D., and L. J. Kerkhof. 1998. Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments. FEMS Microbiol. Lett. 162:61-68.
-
(1998)
FEMS Microbiol. Lett.
, vol.162
, pp. 61-68
-
-
Scala, D.1
Kerkhof, L.J.2
-
23
-
-
0032933229
-
Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments
-
Scala, D., and L. J. Kerkhof. 1999. Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments. Appl. Environ. Microbiol. 65: 1681-1687.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1681-1687
-
-
Scala, D.1
Kerkhof, L.J.2
-
24
-
-
0034071156
-
Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis
-
Scala, D., and L. J. Kerkhof. 2000. Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 66:1980-1986.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1980-1986
-
-
Scala, D.1
Kerkhof, L.J.2
-
26
-
-
0002497474
-
Extraction of microbial DNA from sewage and manure slurries
-
A. D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (ed.). Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Smalla, K. 1995. Extraction of microbial DNA from sewage and manure slurries, p. 1.1.3. In A. D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (ed.), Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
-
(1995)
Molecular Microbial Ecology Manual
-
-
Smalla, K.1
-
27
-
-
0037375062
-
Nitrite reductase genes in halobenzoate degrading denitrifying bacteria
-
Song, B., and B. B. Ward. 2003. Nitrite reductase genes in halobenzoate degrading denitrifying bacteria. FEMS Microbiol. Ecol. 43:349-357.
-
(2003)
FEMS Microbiol. Ecol.
, vol.43
, pp. 349-357
-
-
Song, B.1
Ward, B.B.2
-
28
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
30
-
-
0018869340
-
Halomonas elongata, a new genus and species of extremely salt-tolerant bacteria
-
Vreeland, R. H., C. D. Litchfield, E. L. Martin, and E. Elliot. 1980. Halomonas elongata, a new genus and species of extremely salt-tolerant bacteria. Int. J. Syst. Bacteriol. 30:485-495.
-
(1980)
Int. J. Syst. Bacteriol.
, vol.30
, pp. 485-495
-
-
Vreeland, R.H.1
Litchfield, C.D.2
Martin, E.L.3
Elliot, E.4
-
31
-
-
0035159589
-
Microbial community analysis in the denitrifying process of saline-waste-water by denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA and the cultivation method
-
Yoshie, S., N. Noda, T. Miyano, S. Tsuneda, A. Hirata, and Y. Inamori. 2001. Microbial community analysis in the denitrifying process of saline-waste-water by denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA and the cultivation method. J. Biosci. Bioeng. 92:346-353.
-
(2001)
J. Biosci. Bioeng.
, vol.92
, pp. 346-353
-
-
Yoshie, S.1
Noda, N.2
Miyano, T.3
Tsuneda, S.4
Hirata, A.5
Inamori, Y.6
-
32
-
-
0036946619
-
Characterization of microbial community in nitrogen removal process of metallurgic wastewater by PCR-DGGE
-
Yoshie, S., N. Noda, T. Miyano, S. Tsuneda, A. Hirata, and Y. Inamori. 2002. Characterization of microbial community in nitrogen removal process of metallurgic wastewater by PCR-DGGE. Water Sci. Technol. 46:93-98.
-
(2002)
Water Sci. Technol.
, vol.46
, pp. 93-98
-
-
Yoshie, S.1
Noda, N.2
Miyano, T.3
Tsuneda, S.4
Hirata, A.5
Inamori, Y.6
-
33
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
Zumft, W. G. 1997. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 61:533-616.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 533-616
-
-
Zumft, W.G.1
|