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Volumn 8, Issue , 2004, Pages 298-307

Wrap-and-Pack: A new paradigm for beta structural motif recognition with application to recognizing beta trefoils

Author keywords

Beta Structures; Beta Trefoils; Motif Recognition; Protein Structure Prediction; Rotamer Libraries; Threading

Indexed keywords

BETA STRUCTURES; BETA TREFOILS; MOTIF RECOGNITION; PROTEIN STRUCTURE PREDICTION; ROTAMER LIBRARIES; THREADING;

EID: 2442581305     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (5)

References (22)
  • 2
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PHOT protein database and its supplement TrEMBL in 2000
    • A. Bairoch and R. Apweiler. The SWISS-PHOT protein database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28:45-48, 2000.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 4
    • 0029258846 scopus 로고
    • Algorithms for protein structural motif recognition
    • B. Berger. Algorithms for protein structural motif recognition. J. Comp. Biol., 2:125-138, 1995.
    • (1995) J. Comp. Biol. , vol.2 , pp. 125-138
    • Berger, B.1
  • 5
    • 0030831197 scopus 로고    scopus 로고
    • An iterative method for improved protein structural motif recognition
    • Fall
    • B. Berger and M. Singh. An iterative method for improved protein structural motif recognition. J. Comp. Biol., 4(3):261-273, Fall 1997.
    • (1997) J. Comp. Biol. , vol.4 , Issue.3 , pp. 261-273
    • Berger, B.1    Singh, M.2
  • 6
    • 0035910068 scopus 로고    scopus 로고
    • Betawrap: Successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens
    • P. Bradley, L. Cowen, M. Menke, J. King, and B. Berger. Betawrap: Successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens. Proc. National Academy of Sciences. USA, 98(26): 14819-14824, 2001.
    • (2001) Proc. National Academy of Sciences. USA , vol.98 , Issue.26 , pp. 14819-14824
    • Bradley, P.1    Cowen, L.2    Menke, M.3    King, J.4    Berger, B.5
  • 7
    • 0037172967 scopus 로고    scopus 로고
    • Trilogy: Discovery of sequence-structure patterns across diverse proteins
    • P. Bradley, P. S. Kim, and B. Berger. Trilogy: Discovery of sequence-structure patterns across diverse proteins. Proc. National Academy of Sciences. USA, 99:8500-8505, 2002.
    • (2002) Proc. National Academy of Sciences. USA , vol.99 , pp. 8500-8505
    • Bradley, P.1    Kim, P.S.2    Berger, B.3
  • 8
    • 0027318317 scopus 로고
    • An empirical energy function for threading protein sequence through the folding motif
    • S. H. Bryant and C. E. Lawrence. An empirical energy function for threading protein sequence through the folding motif. Proteins: Structure, Function and Genetics, 16:92-112, 1993.
    • (1993) Proteins: Structure, Function and Genetics , vol.16 , pp. 92-112
    • Bryant, S.H.1    Lawrence, C.E.2
  • 9
    • 0036107627 scopus 로고    scopus 로고
    • Predicting the beta-helix fold from protein sequence data
    • Also in RECOMB'01
    • L. Cowen, P. Bradley, M. Menke, J. King, and B. Berger. Predicting the beta-helix fold from protein sequence data. J. Comp. Biol., 9(2):261-276, 2002. Also in RECOMB'01.
    • (2002) J. Comp. Biol. , vol.9 , Issue.2 , pp. 261-276
    • Cowen, L.1    Bradley, P.2    Menke, M.3    King, J.4    Berger, B.5
  • 10
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • S. Eddy. Profile hidden Markov models. Bioinformatics, 14:755-763. 1998.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.1
  • 12
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • L. Holm and C. Sander. Mapping the protein universe. Science, 260:595-602, 1996.
    • (1996) Science , vol.260 , pp. 595-602
    • Holm, L.1    Sander, C.2
  • 13
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • D. Jones. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol., 292:195-202, 1999.
    • (1999) J. Mol. Biol. , vol.292 , pp. 195-202
    • Jones, D.1
  • 14
    • 0028211273 scopus 로고
    • A model recognition approach to the prediction of all-helical membrane protein structure and topology
    • D. Jones, W. Taylor, and J. Thornton. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry, 33:3038-3049, 1994.
    • (1994) Biochemistry , vol.33 , pp. 3038-3049
    • Jones, D.1    Taylor, W.2    Thornton, J.3
  • 15
    • 0026690571 scopus 로고
    • A new approach to protein fold recognition
    • D. T. Jones, W. R. Taylor, and J. M. Thornton. A new approach to protein fold recognition. Nature, 358:86-89, 1992.
    • (1992) Nature , vol.358 , pp. 86-89
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 17
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • A. Murzin, S. Brenner, T. Hubbard, and C. Chothia. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 297:536-540, 1995.
    • (1995) J. Mol. Biol. , vol.297 , pp. 536-540
    • Murzin, A.1    Brenner, S.2    Hubbard, T.3    Chothia, C.4
  • 18
    • 0030777303 scopus 로고    scopus 로고
    • Cath- A hierarchic classification of protein domain structures
    • C. Orengo, A. Michie, S. Jones, D. Jones, M. Swindells, and J. Thornton. Cath- a hierarchic classification of protein domain structures. Structure, 5(8):1093-1108, 1997.
    • (1997) Structure , vol.5 , Issue.8 , pp. 1093-1108
    • Orengo, C.1    Michie, A.2    Jones, S.3    Jones, D.4    Swindells, M.5    Thornton, J.6
  • 19
    • 0027291015 scopus 로고
    • Prediction of protein secondary structure at better than 70% accuracy
    • B. Rost and C. Sander. Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol., 232:584-599, 1993.
    • (1993) J. Mol. Biol. , vol.232 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 20
    • 0042511005 scopus 로고    scopus 로고
    • A graph-theory algorithm for rapid protein side-chain prediction
    • A. Shelenkov, A. Shelenkov, and R. D. Jr. A graph-theory algorithm for rapid protein side-chain prediction. Protein Science, 9:2001-2014, 2003.
    • (2003) Protein Science , vol.9 , pp. 2001-2014
    • Shelenkov, A.1    Shelenkov, A.2    D. Jr., R.3
  • 21
    • 0025341310 scopus 로고
    • Calculation of conformational ensembles from potentials of mean force
    • M. J. Sippl. Calculation of conformational ensembles from potentials of mean force. J. Mol. Biol., 213:859-883, 1990.
    • (1990) J. Mol. Biol. , vol.213 , pp. 859-883
    • Sippl, M.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.