Protein threading with residue-environment matching by artificial neural networks

Proceedings of the ACM Symposium on Applied Computing

Volumn 1, Issue , 2004, Pages 209-210

  Jiang, Nan ^a   Wu, Wendy Xinyu ^a   Mitchell, Ian ^a  

^a MIDDLESEX UNIVERSITY   (United Kingdom)

Author keywords

Artificial neural networks; Decoy set; Knowledge based potential; Protein threading

Indexed keywords

AMINO ACIDS; BACKPROPAGATION; COMPUTER SOFTWARE; MATHEMATICAL MODELS; PROTEINS;

DECOY SET; KNOWLEDGE BASED POTENTIAL; PROTEIN THREADING;

NEURAL NETWORKS;

EID: 2442436856     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/967900.967943     Document Type: Conference Paper

References (11)

1. Orengo, C. A., Michie, A. D., Jones, S., Jones, D. T., Swindells, M. B. and Thornton, J. M. Structure, 5, 1093-1108, 1997.
2. Bowie, J. U., Luthy, R. and Eisenberg, D. Science, 253, 164-170,1991.
3. Rost, B., Schneider, R. and Sander, C. Journal of Molecular Biology, 270, 471-480, 1997.
4. Jones, D. T. Journal of Molecular Biology, 287(4), 797-815, 1999.
5. Lazaridis, T. and Karplus, M. Current opinion in Structural Biology, 10, 139-145, 2000.
6. Lin, K., May, A. C. W. and Taylor, W. R. Bioinformatics, 18(10), 1350-1357, 2002.
7. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer Jr, E., Brice, M. D. Rodgers, J. R., Kennard, O., Shimanouchi, T. and Tasumi, M. Journal of Molecular Biology, 15, 937-946, 1977.
8. Baldi, P. and Brunak, S. Bioinformaics: The Machine Learning Approach, MIT Press, 2001.
9. Lu, H. and Skolnick, J. Proteins: structure, function, and genetics, 44, 223-232, 2001.
10. Skolnick, J., Kolinski, A. and Ortiz, A. Proteins: structure, function, and genetics, 38, 3-16, 2000.
11. Samudrala, R. and Moult, J. Journal of Molecular Biology, 275, 895-916, 1998.