Novel Src homology 3 domain-binding motifs identified from proteomic screen of a pro-rich region

Molecular and Cellular Proteomics

Volumn 4, Issue 8, 2005, Pages 1155-1166

  Jia, Christina Y H ^a   Nie, Jing ^b   Wu, Chenggang ^a   Li, Chengjun ^a   Li, Shawn S C ^a  

^a WESTERN UNIVERSITY   (Canada)

^b SUN YAT SEN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; GROWTH FACTOR RECEPTOR; PHOSPHOLIPASE C GAMMA; PROLINE;

AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; FLUORESCENCE ANALYSIS; HUMAN; HUMAN CELL; PEPTIDE ANALYSIS; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN MOTIF; PROTEOMICS; SEQUENCE ANALYSIS; SRC HOMOLOGY DOMAIN;

ADAPTOR PROTEINS, SIGNAL TRANSDUCING; AMINO ACID MOTIFS; BINDING SITES; GLUTATHIONE TRANSFERASE; GRB2 ADAPTOR PROTEIN; HUMANS; PEPTIDE FRAGMENTS; PHOSPHOPROTEINS; PROLINE; PROTEIN BINDING; PROTEINS; SRC HOMOLOGY DOMAINS;

MAMMALIA;

EID: 24044465136     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.M500108-MCP200     Document Type: Article

References (40)

1. Castagnoli, L., Costantini, A., Dall'Armi, C., Gonfloni, S., Montecchi-Palazzi, L., Panni, S., Paoluzi, S., Santonico, E., and Cesareni, G. (2004) Selectivity and promiscuity in the interaction network mediated by protein recognition modules. FEBS Lett. 567, 74-79
2. Rubin, G. M., Yandell, M. D., Wortman, J. R., Gabor Miklos, G. L., Nelson, C. R., Hariharan, I. K., Fortini, M. E., Li, P. W., Apweiler, R., Fleischmann, W., Cherry, J. M., Henikoff, S., Skupski, M. P., Misra, S., Ashburner, M., Birney, E., Boguski, M. S., Brody, T., Brokstein, P., Celniker, S. E., Chervitz, S. A., Coates, D., Cravchik, A., Gabrielian, A., Galle, R. F., Gelbart, W. M., George, R. A., Goldstein, L. S., Gong, F., Guan, P., Harris, N. L., Hay, B. A., Hoskins, R. A., Li, J., Li, Z., Hynes, R. O., Jones, S. J., Kuehl, P. M., Lemaitre, B., Littleton, J. T., Morrison, D. K., Mungall, C., O'Farrell, P. H., Pickeral, O. K., Shue, C., Vosshall, L. B., Zhang, J., Zhao, Q., Zheng, X. H., and Lewis, S. (2000) Comparative genomics of the eukaryotes. Science 287, 2204-2215
3. Tong, A. H. Y., Drees, B., Nardelli, G., Bader, G. D., Brannetti, B., Castagnoli, L., Evangelista, M., Ferracuti, S., Nelson, B., Paoluzi, S., Quondam, M., Zucconi, A., Hogue, C. W. V., Fields, S., Boone, C., and Cesareni, G. (2002) A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science 295, 321-324
4. Mayer, B. (2001) SH3 domains: complexity in moderation. J. Cell Sci. 114, 1253-1263
5. Sparks, A. B., Rider, J. E., Hoffman, N. G., Fowlkes, D. M., Quilliam, L. A., and Kay, B. K. (1996) Distinct ligand preferences of Src homology 3 domains from Src, Yes, Abl, Cortactin, p53bp2, PLCγ, Crk, and Grb2. Proc. Natl. Acad. Sci. U. S. A. 93, 1540-1544
6. Sparks, A. B., Rider, J. E., and Kay, B. K. (1998) Mapping the specificity of SH3 domains with phage-displayed random-peptide libraries. Methods Mol Biol. 84, 87-103
7. Feng, S., Kasahara, C., Rickles, R. J., and Schreiber, S. L. (1995) Specific interactions outside the proline-rich core of two classes of Src homology 3 ligands. Proc. Natl. Acad. Sci. U. S. A. 92, 12408-12415
8. Feng, S., Chen, J. K., Yu, H., Simon, J. A., and Schreiber, S. L. (1994) Two binding orientations for peptides to the Src SH3 domain: development of a general model for SH3-ligand interactions. Science 266, 1241-1247
9. Zarrinpar, A., Bhattacharyya, R. P., and Lim, W. A. (2003) The structure and function of proline recognition domains. Sci. STKE 2003, RE8
10. Berry, D. M., Nash, P., Liu, S. K.-W., Pawson, T., and McGlade, C. J. (2002) A high-affinity Arg-X-X-Lys SH3 binding motif confers specificity for the interaction between Gads and SLP-76 in T cell signaling. Curr. Biol. 12, 1336-1341
11. Liu, Q., Berry, D., Nash, P., Pawson, T., McGlade, C. J., and Li, S. S. (2003) Structural basis for specific binding of the Gads SH3 domain to an RxxK motif-containing SLP-76 peptide: a novel mode of peptide recognition. Mol. Cell 11, 471-481
12. Douangamath, A., Filipp, F. V., Klein, A. T. J., Barnett, P., Zou, P., Voorn-Brouwer, T., Vega, M. C., Mayans, O. M., Sattler, M., Distel, B., and Wilmanns, M. (2002) Topography for independent binding of α-helical and PPII-helical ligands to a peroxisomal SH3 domain. Mol. Cell 10, 1007-1017
13. Groemping, Y., Lapouge, K., Smerdon, S. J., and Rittinger, K. (2003) Molecular basis of phosphorylation-induced activation of the NADPH oxidase. Cell 113, 343-355
14. Mongiovi, A. M., Romano, P. R., Panni, S., Mendoza, M., Wong, W. T., Musacchio, A., Cesareni, G., and Paolo Di Fiore, P. (1999) A novel peptide-SH3 interaction. EMBO J. 18, 5300-5309
15. Kang, H., Freund, C., Duke-Cohan, J. S., Musacchio, A., Wagner, G., and Rudd, C. E. (2000) SH3 domain recognition of a proline-independent tyrosine-based RKxxYxxY motif in immune cell adaptor SKAP55. EMBO J. 19, 2889-2899
16. Kato, M., Miyazawa, K., and Kitamura, N. (2000) A deubiquitinating enzyme UBPY interacts with the Src homology 3 domain of Hrs-binding protein via a novel binding motif PX(V/I)(D/N)RXXKP. J. Biol. Chem. 275, 37481-37487
17. Harkiolaki, M., Lewitzky, M., Gilbert, R. J., Jones, E. Y., Bourette, R. P., Mouchiroud, G., Sondermann, H., Moarefi, I., and Feller, S. M. (2003) Structural basis for SH3 domain-mediated high-affinity binding between Mona/Gads and SLP-76. EMBO J. 22, 2571-2582
18. Lewitzky, M., Harkiolaki, M., Domart, M.-C., Jones, E. Y., and Feller, S. M. (2004) Mona/Gads SH3C binding to hematopoietic progenitor kinase 1 (HPK1) combines an atypical SH3 binding motif, R/KXXK, with a classical PXXP motif embedded in a polyproline type II (PPII) helix. J. Biol. Chem. 279, 28724-28732
19. Lewitzky, M., Kardinal, C., Gehring, N. H., Schmidt, E. K., Konkol, B., Eulitz, M., Birchmeier, W., Schaeper, U., and Feller, S. M. (2001) The C-terminal SH3 domain of the adapter protein Grb2 binds with high affinity to sequences in Gab1 and SLP-76 which lack the SH3-typical P-x-x-P core motif. Oncogene 20, 1052-1062
20. Li, S. S. C. (2005) Specificity and versatility of SH3 and other proline recognition domains - structural basis and implications for cellular signal transduction. Biochem. J., in press
21. Clements, J. L. (2003) Known and potential functions for the SLP-76 adapter protein in regulating T-cell activation and development. Immunol. Rev. 191, 211-219
22. Liu, S. K., Berry, D., and McGlade, C. J. (2001) The role of Gads in hematopoietic cell signalling. Oncogene 20, 6284-6290
23. Yablonski, D., Kadlecek, T., and Weiss, A. (2001) Identification of a phospholipase C-γ1 (PLC-γ1) SH3 domain-binding site in SLP-76 required for T-cell receptor-mediated activation of PLC-γ1 and NFAT. Mol. Cell. Biol. 21, 4208-4218
24. Songyang, Z. (2001) Peptide library screening for determination of SH2 or phosphotyrosine-binding domain sequences. Methods Enzymol. 332, 183-195
25. Songyang, Z., Shoelson, S. E., McGlade, J., Olivier, P., Pawson, T., Bustelo, X. R., Barbacid, M., Sabe, H., Hanafusa, H., Yi, T., Ren, R., Baltimore, D., Ratnofsky, S., Feldman, R. A., and Cantley, L. C. (1994) Specific motifs recognized by the SH2 domains of Csk, 3BP2, fps/fes, GRB-2, HCP, SHC, Syk, and Vav. Mol. Cell. Biol. 14, 2777-2785
26. Songyang, Z. (1999) Recognition and regulation of primary-sequence motifs by signaling modular domains. Prog. Biophys. Mol. Biol. 71, 359-372
27. Rodriguez, M., Li, S. S.-C., Harper, J. W., and Songyang, Z. (2004) An oriented peptide array library (OPAL) strategy to study protein-protein interactions. J. Biol. Chem. 279, 8802-8807
28. Frank, R. (2002) The SPOT-synthesis technique: synthetic peptide arrays on membrane supports - principles and applications. J. Immunol. Methods 267, 13-26
29. Huang, Y., and Wange, R. L. (2004) T cell receptor signaling: beyond complex complexes. J. Biol. Chem. 279, 28827-28830
30. Rickles, R., Botfield, M., Zhou, X., Henry, P., and Brugge, J. (1995) Phage display selection of ligand residues important for Src homology 3 domain binding specificity. Proc. Natl. Acad. Sci. U. S. A. 92, 10909-10913
31. Obenauer, J. C., Cantley, L. C., and Yaffe, M. B. (2003) Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Res. 31, 3635-3641
32. Joughin, B. A., Tidor, B., and Yaffe, M. B. (2005) A computational method for the analysis and prediction of protein: phosphopeptide-binding sites. Protein Sci. 14, 131-139
33. Liu, S. K., Fang, N., Koretzky, G. A., and McGlade, C. J. (1999) The hematopoietic-specific adaptor protein Gads functions in T-cell signaling via interactions with the SLP-76 and LAT adaptors. Curr. Biol. 9, 67-75
34. Groemping, Y., and Rittinger, K. (2005) Activation and assembly of the NADPH oxidase: a structural perspective. Biochem. J. 386, 401-416
35. Marles, J. A., Dahesh, S., Haynes, J., Andrews, B. J., and Davidson, A. R. (2004) Protein-protein interaction affinity plays a crucial role in controlling the Sho1p-mediated signal transduction pathway in yeast. Mol. Cell 14, 813-823
36. Chan, B., Lanyi, A., Song, H. K., Griesbach, J., Simarro-Grande, M., Poy, F., Howie, D., Sumegi, J., Terhorst, C., and Eck, M. J. (2003) SAP couples Fyn to SLAM immune receptors. Nat. Cell Biol. 5, 155-160
37. Kojima, C., Hashimoto, A., Yabuta, I., Hirose, M., Hashimoto, S., Kanaho, Y., Sumimoto, H., Ikegami, T., and Sabe, H. (2004) Regulation of Bin1 SH3 domain binding by phosphoinositides. EMBO J. 23, 4413-4422
38. Pawson, T. (2004) Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems. Cell 116, 191-203
39. Freund, C., Kuhne, R., Yang, H., Park, S., Reinherz, E. L., and Wagner, G. (2002) Dynamic interaction of CD2 with the GYF and the SH3 domain of compartmentalized effector molecules. EMBO J. 21, 5985-5995
40. Hu, H., Columbus, J., Zhang, Y., Wu, D., Lian, L., Yang, S., Goodwin, J., Luczak, C., Carter, M., Chen, L., James, M., Davis, R., Sudol, M., Rodwell, J., and Herrero, J. J. (2004) A map of WW domain family interactions. Proteomics 4, 643-655