The sequence and secondary structure of the 3′-utr affect 3′-end maturation, RNA accumulation, and translation in tobacco chloroplasts

Plant Molecular Biology

Volumn 44, Issue 4, 2000, Pages 529-542

  Monde, R A ^a   Greene, J C ^a   Stern, D B ^b  

^a Department of Obstetrics Gynecology   (United States)

^b United States Department of Agriculture Agricultural Research Service and Boyce Thompson Institute for Plant Research   (United States)

Author keywords

Chloroplast transformation; petD; RNA processing; uidA

Indexed keywords

CHLOROPLAST; GENE SEQUENCE; GENE STRUCTURE; IN VITRO CULTURE; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; REPORTER GENE; RNA METABOLISM; RNA TRANSLATION; SPINACH; UNTRANSLATED REGION;

3' UNTRANSLATED REGIONS; BASE SEQUENCE; CHLOROPLASTS; CYTOCHROME B GROUP; CYTOCHROME B6F COMPLEX; GLUCURONIDASE; NUCLEIC ACID CONFORMATION; PLANTS, TOXIC; PROTEIN BINDING; PROTEIN BIOSYNTHESIS; RECOMBINANT FUSION PROTEINS; RNA, MESSENGER; RNA, PLANT; TOBACCO;

EMBRYOPHYTA; NICOTIANA TABACUM; SPINACIA OLERACEA;

EID: 0034527837     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1026540310934     Document Type: Article

References (59)

1. Control of mRNA stability in chloroplasts by 3′ inverted repeats: Effects of stem and loop mutations on degradation of psbA mRNA in vitro
2. Chloroplast mRNA processing: Intron splicing and 3′-end metabolism
3. A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms
4. mRNA degradation in prokaryotic cells: An overview
5. Functional in vivo analyses of the 3′ flanking sequences of the Chlamydomonas chloroplast rbcL and psaB genes
6. Kanamycin resistance as a selectable marker for plastid transfomation in tobacco
7. Specific ribonuclease activities in spinach chloroplasts promote mRNA maturation and degradation
8. Specific binding of chloroplast proteins in vitro to the 3′ untranslated region of spinach chloroplast petD messenger RNA
9. An AU-rich element in the 3′ untranslated region of the spinach chloroplast petD gene participates in sequence-specific RNA-protein complex formation
10. The initiation codon determines the efficiency but not the site of translation initiation in Chlamydomonas chloroplasts
11. Genomic sequencing
12. A chloroplast transcript lacking the 3′ inverted repeat is degraded by 3′ → 5′ exoribonuclease activity
13. In vivo analysis of plastid psbA, rbcL and rpl32 UTR elements by chloroplast transformation: Tobacco plastid gene expression is controlled by modulation of transcript levels and translation efficiency
14. Translational regulation of gene expression in chloroplasts and mitochondria
15. Control of translation initiation in animals
16. Control of mRNA degradation in organelles
17. Chloroplast gene expression and promoter identification in chloroplast extracts
18. Chloroplast mRNA 3′-end processing by a high molecular weight protein complex is regulated by nuclear encoded RNA binding proteins
19. Degrading chloroplast mRNA: The role of polyadenylation
20. The role of the 3′ end in mRNA stability and decay
21. β-glucuronidase gene expression and mRNA stability in oat protoplasts
22. Small cis-acting sequences that specify secondary structures in a chloroplast mRNA are essential for RNA stability and translation
23. Cis-acting elements and transacting factors for accurate translation of chloroplast psbA mRNAs: Development of an in vitro translation system from tobacco chloroplasts
24. Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells
25. Polyadenylation of three classes of chloroplast RNA in Chlamydomonas reinhardtii
26. Function of 3′ non-coding sequences and stop codon usage in expression of the chloroplast psaB gene in Chlamydomonas reinhardtii
27. Three distinct ribonucleoproteins from tobacco chloroplasts: Each contains a unique amino terminal acidic domain and two ribonucleoprotein consensus motifs
28. Chloroplast endoribonuclease p54 involved in RNA 3′-end processing is regulated by phosphorylation and redox state
29. Phosphorylation of a chloroplast RNA-binding protein changes its affinity to RNA
30. RNA-binding characteristics of a ribonucleoprotein from spinach chloroplasts
31. RNA-binding proteins of 37/38 kDa bind specifically to the barley chloroplast psbA 3′-end untranslated RNA
32. Multiple plant RNA-binding proteins identified by PCR: Expression of cDNAs encoding RNA-binding proteins targeted to chloroplasts in Nicotiana plumbagnifolia
33. RNA-protein interactions at transcript 3′ ends and evidence for trnK-psbA cotranscription in mustard chloroplasts
34. The 54 kDa RNA-binding protein from mustard chloroplasts mediates endonucleolytic transcript 3′ end formation in vitro
35. Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas
36. Post-transcriptional regulation of chloroplast gene expression in Chlamydomonas
37. Introns act post-transcriptionally to increase expression of the Arabidopsis thaliana tryptophan pathway gene PAT1
38. The 3′ untranslated regions of chloroplast genes in Chlamydomonas reinhardtii do not serve as efficient transcriptional terminators
39. 3′-processed mRNA is preferentially translated in Chlamydomonas reinhardtii chloroplasts
40. The sequence and structure of the 3′-untranslated regions of chloroplast transcripts are important determinants of mRNA accumulation and stability
41. Altering the 3′ UTR endonucleolytic cleavage site of a Chlamydomonas chloroplast mRNA affects 3′ end maturation in vitro but not in vivo
42. Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein
43. Update on chloroplast molecular biology: Polyadenylation and degradation of mRNA in the chloroplast
44. The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression
45. Accumulation of D1 polypeptide in tobacco plastids is regulated via the untranslated region of the psbA mRNA
46. Translation of psbA mRNA is regulated by light via the 5′-untranslated region in tobacco plastids
47. Control of plastid gene expression: 3′ inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription
48. Chloroplast mRNA 3′ end maturation is biochemically distinct from prokaryotic mRNA processing
49. 3′ end maturation of the Chlamydomonas reinhardtii chloroplast atpB mRNA is a two-step process
50. Function of plastid mRNA 3′ inverted repeats: RNA stabilization and gene-specific protein binding
51. A 3′ stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation itt vivo
52. Regulation of gene expression in chloroplasts of higher plants
53. High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene
54. The spinach chloroplast endoribonuclease CSP41 cleaves the 3′ untranslated region of petD mRNA primarily within its terminal stem-loop structure
55. CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease
56. Diversity of a ribonucleoprotein family in tobacco chloroplasts: Two new chloroplast ribonucleoproteins and a phylogenetic tree of ten chloroplast RNA-binding domains
57. Translation of the chloroplast psbC mRNA is controlled by interactions between its 5′ leader and the nuclear loci TBC1 and TBC3 in Chlamydomonas reinhardtii