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Volumn 34, Issue 5, 1997, Pages 731-743

Structural analyses of plastid-derived 16S rRNAs in holoparasitic angiosperms

Author keywords

Composition bias; Nonphotosynthetic plant; Small subnnit ribosomal RNA structure; Substitution rate acceleration

Indexed keywords

PLANT RNA; RNA 16S;

EID: 0031194186     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1005808615763     Document Type: Article
Times cited : (28)

References (53)
  • 1
    • 0029402902 scopus 로고
    • Genomic evolution drives the evolution of the translational system
    • Andersson SGE, Kurland CG: Genomic evolution drives the evolution of the translational system. Biochem Cell Biol 73: 775-787 (1995).
    • (1995) Biochem Cell Biol , vol.73 , pp. 775-787
    • Andersson, S.G.E.1    Kurland, C.G.2
  • 2
    • 0026675038 scopus 로고
    • Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms
    • Bruns TD, Szaro TM: Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms. Mol Biol Evol 9: 836-855 (1992).
    • (1992) Mol Biol Evol , vol.9 , pp. 836-855
    • Bruns, T.D.1    Szaro, T.M.2
  • 3
    • 0002199220 scopus 로고
    • Press MC, Graves JD (eds) Parasitic Plants, Chapman and Hall, London
    • dePamphilis CW: Genes and genomes. In: Press MC, Graves JD (eds) Parasitic Plants, pp. 176-205. Chapman and Hall, London (1995).
    • (1995) Genes and Genomes , pp. 176-205
    • Depamphilis, C.W.1
  • 4
    • 0025712978 scopus 로고
    • Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant
    • dePamphilis CW, Palmer JD: Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant. Nature 348: 337-339 (1990).
    • (1990) Nature , vol.348 , pp. 337-339
    • Depamphilis, C.W.1    Palmer, J.D.2
  • 5
    • 0030738482 scopus 로고    scopus 로고
    • Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: Many losses of photosynthesis and complex patterns of rate variation
    • in press
    • dePamphilis CW, Young ND, Wolfe AD: Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: many losses of photosynthesis and complex patterns of rate variation. Proc Natl Acad Sci USA, in press (1997).
    • (1997) Proc Natl Acad Sci USA
    • Depamphilis, C.W.1    Young, N.D.2    Wolfe, A.D.3
  • 6
    • 0027500136 scopus 로고
    • Ribosomal RNA secondary structure: Compensatory mutations and implications for phylogenetic analysis
    • Dixon MT, Hillis DM: Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis. Mol Biol Evol 10: 256-267 (1993).
    • (1993) Mol Biol Evol , vol.10 , pp. 256-267
    • Dixon, M.T.1    Hillis, D.M.2
  • 7
    • 0025718527 scopus 로고
    • Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor
    • Douglas SE, Turner S: Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor. J Mol Evol 33: 266-273 (1991).
    • (1991) J Mol Evol , vol.33 , pp. 266-273
    • Douglas, S.E.1    Turner, S.2
  • 8
    • 8544263112 scopus 로고    scopus 로고
    • Characterization of mitochondrial SSU (18S) rDNA from holoparasitic plants
    • submitted
    • Duff RJ, Nickrent DL: Characterization of mitochondrial SSU (18S) rDNA from holoparasitic plants. J Mol Evol (submitted).
    • J Mol Evol
    • Duff, R.J.1    Nickrent, D.L.2
  • 10
    • 0029411215 scopus 로고
    • Transcription, splicing and editing of plastid RNAs in the nonphotosynthetic plant Epifagus virginiana
    • Ems SC, Morden CW, Dixon CK, Wolfe KH, dePamphilis CW, Palmer JD: Transcription, splicing and editing of plastid RNAs in the nonphotosynthetic plant Epifagus virginiana. Plant Mol Biol 29: 721-733 (1995).
    • (1995) Plant Mol Biol , vol.29 , pp. 721-733
    • Ems, S.C.1    Morden, C.W.2    Dixon, C.K.3    Wolfe, K.H.4    Depamphilis, C.W.5    Palmer, J.D.6
  • 11
    • 0024961828 scopus 로고
    • Chromosome localization-dependent compositional bias of point mutations in Alu repetive sequences
    • Filipski J, Salinas J, Rodier F: Chromosome localization-dependent compositional bias of point mutations in Alu repetive sequences. J Mol Biol 206: 563-566 (1989).
    • (1989) J Mol Biol , vol.206 , pp. 563-566
    • Filipski, J.1    Salinas, J.2    Rodier, F.3
  • 12
    • 0004151515 scopus 로고
    • Biocomputing Office, Biology Dept, Indiana University, Bloomington, IN 47405
    • Gilbert DG: SeqApp, version 1.9a157. Biocomputing Office, Biology Dept, Indiana University, Bloomington, IN 47405 (1993).
    • (1993) SeqApp, Version 1.9a157
    • Gilbert, D.G.1
  • 13
    • 0028071557 scopus 로고
    • Collection of small subunit (16S- And 16S-like) ribosomal RNA structures: 1994
    • Gutell RR: Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994. Nucl Acids Res 22: 3502-3507 (1994).
    • (1994) Nucl Acids Res , vol.22 , pp. 3502-3507
    • Gutell, R.R.1
  • 14
    • 0027265356 scopus 로고
    • Collection of small subunit (16S- And 16S-like) ribosomal RNA structures
    • Gutell RR: Collection of small subunit (16S- and 16S-like) ribosomal RNA structures. Nucl Acids Res 21: 3051-3054 (1993).
    • (1993) Nucl Acids Res , vol.21 , pp. 3051-3054
    • Gutell, R.R.1
  • 15
    • 0027236838 scopus 로고
    • Comparative studies of RNA: Inferring higher-order structure from patterns of sequence variation
    • Gutell RR: Comparative studies of RNA: inferring higher-order structure from patterns of sequence variation. Curr Opin Struct Biol 3: 313-322 (1993).
    • (1993) Curr Opin Struct Biol , vol.3 , pp. 313-322
    • Gutell, R.R.1
  • 17
    • 0025191217 scopus 로고
    • Higher order structural elements in ribosomal RNAs: Pseudo-knots and the use of noncanonical pairs
    • Gutell RR, Woese CR: Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs. Proc Natl Acad Sci USA 87: 663-667 (1990).
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 663-667
    • Gutell, R.R.1    Woese, C.R.2
  • 19
    • 0028294455 scopus 로고
    • Wide variations in neighbor-dependent substitution rates
    • Hess ST, Blake JD, Blake RD: Wide variations in neighbor-dependent substitution rates. J Mol Biol 236: 1022-1033 (1994).
    • (1994) J Mol Biol , vol.236 , pp. 1022-1033
    • Hess, S.T.1    Blake, J.D.2    Blake, R.D.3
  • 21
    • 0025361553 scopus 로고
    • Predicting optimal and sub-optimal secondary structure for RNA
    • Jaeger JA, Turner DH, Zuker M: Predicting optimal and sub-optimal secondary structure for RNA. Meth Enzymol 183: 281-306 (1990).
    • (1990) Meth Enzymol , vol.183 , pp. 281-306
    • Jaeger, J.A.1    Turner, D.H.2    Zuker, M.3
  • 22
    • 0029348884 scopus 로고
    • A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs
    • Konings DAM, Gutell RR: A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs. RNA 1: 559-574 (1995).
    • (1995) RNA , vol.1 , pp. 559-574
    • Konings, D.A.M.1    Gutell, R.R.2
  • 24
    • 0021710490 scopus 로고
    • Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications
    • Li W-H, Wu C-I, Luo C-C: Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications. J Mol Evol 21: 58-71 (1984).
    • (1984) J Mol Evol , vol.21 , pp. 58-71
    • Li, W.-H.1    Wu, C.-I.2    Luo, C.-C.3
  • 26
    • 0001053254 scopus 로고
    • Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns
    • Manhart J: Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns. Am Fern J 85: 182-192 (1995).
    • (1995) Am Fern J , vol.85 , pp. 182-192
    • Manhart, J.1
  • 27
    • 0001210124 scopus 로고
    • A molecular approach to the phylogeny of bryophytes: Cladistic analysis of chloroplast-encoded 16S and 23S ribosomal RNA genes
    • Mishler BD, Thrall PH, Hopple JSJ, De Luna E, Vilgalys R: A molecular approach to the phylogeny of bryophytes: cladistic analysis of chloroplast-encoded 16S and 23S ribosomal RNA genes. Bryologist 95: 172-180 (1992).
    • (1992) Bryologist , vol.95 , pp. 172-180
    • Mishler, B.D.1    Thrall, P.H.2    Hopple, J.S.J.3    De Luna, E.4    Vilgalys, R.5
  • 28
  • 29
    • 0026052010 scopus 로고
    • Plastid translation and transcription genes in a nonphotosynthetic plant: Intact, missing and pseudo genes
    • Morden CW, Wolfe KH, dePamphilis CW, Palmer JD: Plastid translation and transcription genes in a nonphotosynthetic plant: intact, missing and pseudo genes. EMBO J 10: 3281-3288 (1991).
    • (1991) EMBO J , vol.10 , pp. 3281-3288
    • Morden, C.W.1    Wolfe, K.H.2    DePamphilis, C.W.3    Palmer, J.D.4
  • 30
    • 0028865532 scopus 로고
    • Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions
    • Morton BR: Neighboring base composition and transversion/transition bias in a comparison of rice and maize chloroplast noncoding regions. Proc Natl Acad Sci USA USA 92: 9717-9721 (1995).
    • (1995) Proc Natl Acad Sci USA USA , vol.92 , pp. 9717-9721
    • Morton, B.R.1
  • 31
    • 0028900996 scopus 로고
    • Evolutionary analysis of DNA sequences subject to constraints on secondary structure
    • Muse SV: Evolutionary analysis of DNA sequences subject to constraints on secondary structure. Genetics 139: 1429-1439 (1995).
    • (1995) Genetics , vol.139 , pp. 1429-1439
    • Muse, S.V.1
  • 33
    • 0028863523 scopus 로고
    • An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences
    • Nelissen B, van de Peer Y, Wilmotte A, de Wachter R: An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences. Mol Biol Evol 12: 1166-1173 (1995).
    • (1995) Mol Biol Evol , vol.12 , pp. 1166-1173
    • Nelissen, B.1    Van De Peer, Y.2    Wilmotte, A.3    De Wachter, R.4
  • 34
    • 0028154626 scopus 로고
    • From field to film: Rapid sequencing methods for field collected plant species
    • Nickrent DL: From field to film: rapid sequencing methods for field collected plant species. BioTechniques 16: 470-475 (1994).
    • (1994) BioTechniques , vol.16 , pp. 470-475
    • Nickrent, D.L.1
  • 36
    • 0002171845 scopus 로고    scopus 로고
    • Molecular studies of parasitic plants using ribosomal RNA
    • Moreno MT, Cubero JI, Berner D, Joel D, Musselman LJ, Parker C (eds) Junta de Andalucia, Dirección General de Investigación Agraria, Cordoba, Spain
    • Nickrent DL, Duff RJ: Molecular studies of parasitic plants using ribosomal RNA. In: Moreno MT, Cubero JI, Berner D, Joel D, Musselman LJ, Parker C (eds) Advances in Parasitic Plant Research, pp. 28-52. Junta de Andalucia, Dirección General de Investigación Agraria, Cordoba, Spain (1996).
    • (1996) Advances in Parasitic Plant Research , pp. 28-52
    • Nickrent, D.L.1    Duff, R.J.2
  • 37
  • 38
    • 0028275088 scopus 로고
    • High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants
    • Nickrent DL, Starr EM: High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants. J Mol Evol 39: 62-70 (1994).
    • (1994) J Mol Evol , vol.39 , pp. 62-70
    • Nickrent, D.L.1    Starr, E.M.2
  • 39
    • 0026639881 scopus 로고
    • Unusual resistance of peptidyl transferase to protein extraction procedures
    • Noller HF, Hoffarth V, Zimniak L: Unusual resistance of peptidyl transferase to protein extraction procedures. Science 256: 1416-1419 (1992).
    • (1992) Science , vol.256 , pp. 1416-1419
    • Noller, H.F.1    Hoffarth, V.2    Zimniak, L.3
  • 40
    • 0025249858 scopus 로고
    • Contrasting modes and tempos of genome evolution in land plant organelles
    • Palmer JD: Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet 6: 115-120 (1990).
    • (1990) Trends Genet , vol.6 , pp. 115-120
    • Palmer, J.D.1
  • 41
    • 0027185688 scopus 로고
    • A genetic rainbow of plastids
    • Palmer JD: A genetic rainbow of plastids. Nature 364: 762-763 (1993).
    • (1993) Nature , vol.364 , pp. 762-763
    • Palmer, J.D.1
  • 42
    • 0025303416 scopus 로고
    • Organization and nucleotide sequence of ribosomal RNA genes on a circular 73 kbp DNA from the colourless flagellate Astasia longa
    • Siemeister G, Hachtel W: Organization and nucleotide sequence of ribosomal RNA genes on a circular 73 kbp DNA from the colourless flagellate Astasia longa. Curr Genet 17: 433-438 (1990).
    • (1990) Curr Genet , vol.17 , pp. 433-438
    • Siemeister, G.1    Hachtel, W.2
  • 43
    • 0029935170 scopus 로고    scopus 로고
    • Mutator tRNAs are encoded by the Escherichia coli mutator genes mutA and mutC: A novel pathway for mutagenesis
    • Slupska MM, Baikalov C, Lloyd R, Miller JH: Mutator tRNAs are encoded by the Escherichia coli mutator genes mutA and mutC: a novel pathway for mutagenesis. Proc Natl Acad Sci USA USA 93: 4380-4385 (1996).
    • (1996) Proc Natl Acad Sci USA USA , vol.93 , pp. 4380-4385
    • Slupska, M.M.1    Baikalov, C.2    Lloyd, R.3    Miller, J.H.4
  • 46
    • 0017148262 scopus 로고
    • Complementary base pairing and the origin of substitution mutations
    • Topal M, Fresco J: Complementary base pairing and the origin of substitution mutations. Nature 263: 285-289 (1976).
    • (1976) Nature , vol.263 , pp. 285-289
    • Topal, M.1    Fresco, J.2
  • 49
    • 0021012648 scopus 로고
    • Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids
    • Woese CR, Gutell R, Gupta R, Noller HF: Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids. Microbiol Rev 47: 621-669 (1983).
    • (1983) Microbiol Rev , vol.47 , pp. 621-669
    • Woese, C.R.1    Gutell, R.2    Gupta, R.3    Noller, H.F.4
  • 50
    • 0026843896 scopus 로고
    • Evolution of the plastid ribosomal RNA operon in a nongreen parasitic plant: Accelerated sequence evolution, altered promoter structure, and tRNA pseudogenes
    • Wolfe KH, Katz-Downie DS, Morden CW, Palmer JD: Evolution of the plastid ribosomal RNA operon in a nongreen parasitic plant: accelerated sequence evolution, altered promoter structure, and tRNA pseudogenes. Plant Mol Biol 18: 1037-1048 (1992).
    • (1992) Plant Mol Biol , vol.18 , pp. 1037-1048
    • Wolfe, K.H.1    Katz-Downie, D.S.2    Morden, C.W.3    Palmer, J.D.4
  • 51
    • 0026447426 scopus 로고
    • Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant
    • Wolfe KH, Morden CW, Palmer JD: Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. Proc Natl Acad Sci USA USA 89: 10648-10652 (1992).
    • (1992) Proc Natl Acad Sci USA USA , vol.89 , pp. 10648-10652
    • Wolfe, K.H.1    Morden, C.W.2    Palmer, J.D.3
  • 52
    • 0026565485 scopus 로고
    • Small single-copy region of plastid DNA in the non-photosynthetic angiosperm Epifagus virginiana contains only two genes
    • Wolfe KH, Morden CW, Palmer JD: Small single-copy region of plastid DNA in the non-photosynthetic angiosperm Epifagus virginiana contains only two genes. J Mol Biol 223: 95-104 (1992).
    • (1992) J Mol Biol , vol.223 , pp. 95-104
    • Wolfe, K.H.1    Morden, C.W.2    Palmer, J.D.3
  • 53
    • 0025731211 scopus 로고
    • A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison
    • Zuker M, Jaeger JA, Turner DH: A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison. Nucl Acids Res 19: 2707-2714 (1991).
    • (1991) Nucl Acids Res , vol.19 , pp. 2707-2714
    • Zuker, M.1    Jaeger, J.A.2    Turner, D.H.3


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