Automated genotyping of Saccharomyces cerevisiae using the RiboPrinter®

International Journal of Food Microbiology

Volumn 104, Issue 1, 2005, Pages 35-41

  Arvik, Torey ^a   Henick Kling, Thomas ^a   Gafner, Jürg ^b  

^a New York State Agricultural Experiment Station   (United States)

^b Swiss Federal Research Station for Fruit Growing Viticulture and Horticulture   (Switzerland)

Author keywords

Automated typing; DNA probes; RiboPrinter ; Saccharomyces

Indexed keywords

ANALYTICAL EQUIPMENT; ARTICLE; AUTOANALYSIS; AUTOMATION; CHEMICAL LABELING; ENVIRONMENT; EXPERIMENT; FOOD; GENE PROBE; GENOTYPE; MICROBIOLOGICAL EXAMINATION; MOLECULAR TYPING; MULTIGENE FAMILY; NONHUMAN; RIBOTYPING; SACCHAROMYCES CEREVISIAE; YEAST;

DNA, FUNGAL; FOOD CONTAMINATION; FOOD MICROBIOLOGY; GENOTYPE; RIBOTYPING; SACCHAROMYCES CEREVISIAE; SPECIES SPECIFICITY;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 23944495262     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2004.12.030     Document Type: Article

References (38)

1. T. Arvik, J. Gafner, and T. Henick-Kling Comparison of manual and automated methods for typing of Oenococcus oeni American Journal of Enology and Viticulture 51 3 2000 300 301
2. F.M. Ausubel, R. Brent, R.E. Kinston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl Preparation of yeast DNA F.M. Ausubel R. Brent R.E. Kinston D.D. Moore J.G. Seidman J.A. Smith K. Struhl Current protocols in molecular biology 1989 John Wiley and Sons New York
3. V.I. Barna, L. Solti, J. Teren, A. Gyongyosi, E. Szabo, and A. Wolfling Sensitive ELISA test for determination of ochratoxin A Journal of Agricultural and Food Chemistry 44 12 1996 4071 4074
4. S. Casaregola, H. Nguyen, G. Lapathitis, A. Kotyk, and C. Gaillardin Analysis of the beer yeast genome by PCR, sequencing and subtelomeric sequence hybridization International Journal of Systematic Evolutionary Microbiology 51 2001 1607 1618
5. C.S. Chiou, H.L. Wei, and L.C. Yang Comparison of pulsed-field gel electrophoresis and coagulase gene restriction profile analysis techniques in the molecular typing of Staphylococcus aureus Journal of Clinical Microbiology 38 6 2000 2186 2190
6. A. Dalsgaard, A. Forslund, and V. Fussing Traditional ribotyping shows a higher discrimination than the automated RiboPrinter® system in typing Vibrio cholerae O1 Letters in Applied Microbiology 28 4 1999 327 333
7. J. Decock, and D. Iserenant Ty hybridization patterns of yeast and their use for strain identification EBC Congress 1985
8. H. Eibel, J. Gafner, A. Stotz, and P. Philippsen Characterization of the yeast mobile element Ty1 Cold Spring Harbor Symposium for Quantitative Biology 45 1981 609 617
9. S.J. Fritschel, T.R. Dambaugh, and E. Mangiaterra Ribotype characterization of Salmonella and E. coli O157:H7 with PvuII on the RiboPrinter® Microbial Characterization System™ Abstracts of the General Meeting of the American Society for Microbiology 97 0 1997 439
10. D.Y.C. Fung Rapid methods and automation in food microbiology: a review Food Reviews International 10 3 1994 357 375
11. Gafner, J. 1982. PhD thesis, Biozentrum, Universität Basel, Schweiz.
12. J. Gafner, and P. Philippsen The yeast transposon Ty1 generates duplications of target DNA on insertion Nature 24 1980 414 418
13. C. Grimm, and R. Geisen A PCR-ELISA for the detection of potential fumonisin producing Fusarium species Letters in Applied Microbiology 26 6 1998 456 462
14. W.E. Hill The polymerase chain reaction: applications for the detection of foodborne pathogens Critical Reviews in Food Science and Nutrition 36 2 1996 123 173
15. N.J. Holton, T.J. Goodwin, M.I. Butler, and R.T. Poulter An active retrotransposon in Candida albicans Nucelic Acids Research 29 19 2001 4014 4024
16. H. Horowitz, and J.E. Haber Sub-telomeric region of yeast chromosomes contain a 36-bp tandemly repeated sequence Nucelic Acids Research 12 1984 7107 7117
17. N.P. Jolly, B.J.H. Janse, T.J. Van Rooyen, and J.H. Luow Hybridization and typing of yeast used in sparkling wine fermentations American Journal of Enology and Viticulture 44 2 1993 217 226
18. S. Joly, C. Pujol, M. Rysz, K. Vargas, and D.R. Soll Development and characterization of complex DNA fingerprinting probes for the infectious yeast Candida albicans Journal of Clinical Microbiology 37 4 1999 1035 1044
19. J.M. Kim, S. Vanguri, J.D. Boeke, A. Gabriel, and D.F. Voytas Transposable elelments and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence Genome Research 8 1998 464 478
20. A.L. Kruckeberg The hexose transporter family of Saccharomyces cerevisiae Archives of Microbiology 166 1996 283 292
21. F. Levallée, Y. Salvas, S. Lamy, D.Y. Thomas, R. Degre, and L. Dulau PCR and DNA fingerprinting used as quality control in the production of wine yeast strains American Journal of Enology and Viticulture 45 1 1994 86 91
22. B. Llorente, A. Malpertuy, G. Blandin, F. Atguenave, P. Wincker, and B. Dujon Genomic exploration of the hemiascomycotous yeasts: Kluyveromyces marxianus var. marxianus FEBS Letters 487 1 2000 71 75
23. J. Melior, A.J. Kingsman, and S.M. Kingsman Ty: an endogenous retrovirus of yeast Yeast 2 1986 145 152
24. R.K. Mortimer Evolution and variation of the yeast (Saccharomyces) genome Genome Research 10 2000 403 409
25. C.A. Moser, T.L. Stull, and K.A. Pidcock Sub-cloned ribosomal RNA probe for bacterial ribotype analysis Journal of Infectious Diseases 169 6 1994 1413 1414
26. D.M. Olive, and P. Bean Principles and applications of methods for DNA-based typing of microbial organisms Journal of Clinical Microbiology 37 6 1999 1661 1669
27. E.P. Plant, T.J. Goodwin, and R.T. Poulter Tca5, a Ty5-like retrotransposon from Candida albicans Yeast 16 16 2000 1509 1518
28. C. Pujol, S. Joly, B. Nolan, T. Srikantha, and D.R. Soll Microevolutionary changes in Candida albicans identified by the complex Ca3 fingerprinting probe involve insertions and deletions of full-length repetitive sequence RPS at specific genome sites Microbiology 145 1999 2635 2646
29. J. Sambrook, E.E. Fritsch, and T. Maniatus Molecular cloning, a laboratory manual 1989 Cold Spring Harbor Laboratory Press Woodbury, NY
30. D.R. Soll The ins and outs of DNA fingerprinting the infectious fungi Clinical Microbiology 13 2 2000 332 370
31. E.M. Southern Detection of specific sequences among DNA fragments separated by gel electrophoresis Journal of Molecular Biology 98 1975 503 517
32. T.L. Stull, J.J. LiPuma, and T.D. Edlind A broad-spectrum probe for molecular epidemiology of bacteria: ribosomal RNA Journal of Infectious Diseases 157 2 1988 280 286
33. B. Theelen, M. Sylvestri, E. Gueho, A. van Belkum, and T. Boekhout Identification and typing of Malassezia yeast using amplified fragment length polymorphism (AFLP), random amplified polymorphic DNA (RAPD) and denaturing gradient gel electrophoresis (DGGE) FEMS Yeast Research 1 2 2001 79 86
34. H.Y. Tsen, and J.S. Lin Analysis of Salmonella enteriditis strains isolated from food-poisoning cases in Taiwan by pulsed-field gel electrophoresis, plasmid profile and phage typing Journal of Applied Microbiology 91 1 2001 72 79
35. C. Viti, D. Forni, S. Ventura, A. Messini, R. Materassi, and L. Giovanetti Characterization of Saccharomyces strains by DNA fingerprinting Annals of Microbiology 50 2 2000 191 203
36. B.F. Vogel, H.H. Huss, B. Ojeniyi, P. Ahrens, and L. Gram Elucidation of Listeria monocytogenes contamination routes in cold-smoked salmon processing plants detected by DNA-based typing methods Applied and Environmental Microbiology 67 6 2001 2586 2595
37. P. Wightman, D.E. Quain, and P.G. Meaden Analysis of production brewing strains of yeast by DNA fingerprinting Letters in Applied Microbiology 22 1 1996 90 94
38. J.Q. Xia, and C.L. Sutula ELISA detection of Btk endotoxin protein in transgenic plant tissue and on sprayed plant surfaces Phytopathology 87 Supplemental 1997 S105