Characterisation and typing of Saccharomyces strains by DNA fingerprinting

Annals of Microbiology

Volumn 50, Issue 2, 2000, Pages 191-203

  Viti, C ^a   Forni, D ^a   Ventura, S ^a   Messini, A ^a   Materassi, R ^a   Giovannetti, L ^a  

^a UNIVERSITY OF FLORENCE   (Italy)

Author keywords

DNA fingerprinting; Identification; Saccharomyces; Strain typing; Yeast

Indexed keywords

EID: 0039333440     PISSN: 15904261     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (48)

1. Barberio C., Fani R., Raso A., Carli A., Polsinelli M. (1994). DNA fingerprinting of yeast strains by restriction enzyme analysis. Res. Microbiol., 145: 659-666.
2. Barnett J.A. (1992). The taxonomy of the genus Saccharomyces Meyen ex Reess: a short review for non-taxonomists. Yeast, 8: 1-23.
3. Berardi E., Fatichenti F. (1989). Thermal profile of Saccharomyces sensu stricto type-strains. Yeast, 5: S387-S391.
4. Cardinali G., Martini A. (1994). Electrophoretic karyotypes of authentic strains of the sensu stricto group of the genus Saccharomyces. Int. J. Syst. Bacteriol., 44: 791-797.
5. Castellari L., Ferruzzi M., Magrini A., Zambonelli C. (1994). Effetti della temperatura di fermentazione sulla composizione dei vini prodotti da differenti ceppi di Saccharomyces cerevisiae. Vitivinicoltura, 37: 19-25.
6. Castellari L., Tini V., Zambonelli C., Rainieri S. (1998). Oenological properties of cryotolerant and thermotolerant Saccharomyces strains. Food Technol. Biotechnol., 4: 319-323.
7. de Barros Lopes M., Rainieri S., Henschke P.A., Langridge P. (1999). AFLP fingerprinting for analysis of yeast genetic variation. Int. J. Syst. Bacteriol., 49: 915-924.
8. Degli-Innocenti F., Ferdani E., Pesenti-Barili B., Dani M., Giovannetti L., Ventura S. (1990). Identification of microbial isolates by DNA fingerprinting: analysis of ATCC Zymomonas strains. J. Biotechnol., 13: 335-346.
9. De Philippis R., Messini A., Vincenzini M., Materassi R. (1994). Cinetiche di fermentazione e caratteristiche enologiche di lieviti vinari fermentanti a bassa temperatura. Ann. Microbiol. Enzimol., 44: 291-303.
10. Dlauchy D., Tornai-Lehoczki J., Gabor P. (1999). Restriction enzyme analysis of PCR amplified rDNA as a taxonomic tool in yeast identification. System. Appl. Microbiol., 22: 445-453.
11. Duim B., Wassenaar T.M., Rigter A., Wagenaar J. (1999). High-resolution genotyping of Campilobacter strains isolated from poultry and humans with amplified fragment length polymorphism fingerprinting. Appl. Environ. Microbiol., 65: 2369-2375.
12. Fernández-Espinar T., Barrio E., Ramón D., Querol A. (1998). Genetic variability and identification among species of the Saccharomyces sensu stricto by RAPDS. In: Abstract Book of 19 ISSY, Yeast in the Production and Spoilage of Food and Beverage. Braga, Portugal, p. 216.
13. Giovannetti L., Ventura S., Bazzicalupo M., Fani R., Materassi R. (1990). DNA restriction fingerprint analysis of the soil bacterium Azospirillum. J. Gen. Microbiol., 136: 1161-1166.
14. Giovannetti L., Ventura S. (1995). Application of total DNA restriction pattern analysis to identification and differentiation of bacterial strains. In: Howard J., Whitcombe D.M. eds, Diagnostic Bacteriology Protocols. Humana Press, Totowa, N.J., pp. 165-179.
15. Guillamón J.M., Barrio E., Huerta T., Querol A. (1994). Rapid characterization of four species of Saccharomyces sensu stricto complex according to mitochondrial DNA patterns. Int. J. Syst. Bacteriol., 44: 708-714.
16. Guillamón J.M., Barrio E., Querol A. (1996). Characterization of wine yeast strains of Saccharomyces genus on the basis of molecular markers: relationships between genetic distance and geographic or ecological origin. Syst. Appl. Microbiol., 19: 122-132.
17. Janssen P., Coopman R., Huys G., Swings J., Bleeker M., Vos P., Zabeau M., Kersters K. (1996). Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiology, 142: 1881-1893.
18. Kishimoto M., Goto S. (1995). Growth temperatures and electrophoretic karyotyping as tools tor practical discrimination of Saccharomyces bayanus and Saccharomyces cerevisiae. J. Gen. Appl. Microbiol., 41: 239-247.
19. Madeira-Lopes A., van Uden N. (1979) Thermal association and dissociation in thermosensitive mutants of Saccharomyces cerevisiae. Z. Allg. Mikrobiol., 19: 303-305.
20. Messner R., Prillinger H. (1995). Saccharomyces species assignment by long range ribotyping. Antonie van Leeuwenhoek, 67: 363-370.
21. Molina F.I., Inoe T., Jong S.-C. (1992a) Restriction polymorphisms in the internal transcribed spacers and 5.8S rDNA of Saccharomyces. Curr. Microbiol., 25: 251-255.
22. Molina F.I., Inoe T., Jong S.-C. (1992b). Ribosomal DNA restriction analysis reveals genetic heterogeneity in Saccharomyces cerevisiae Meyen ex Hansen. Int. J. Syst. Bacteriol., 42: 499-502.
23. Molnár O., Messner R., Prillinger H., Stahl U., Slavikova E. (1995). Genotypic identification of Saccharomyces species using random amplified polymorphic DNA analysis. Syst. Appl. Microbiol., 18: 136-145.
24. Montrocher R., Verner M., Briolay J., Gautier C., Marmeisse R. (1998). Phylogenetic analysis of Saccharomyces cerevisiae group based on polymorphisms of rDNA spacer sequences. Int. J. Syst. Bacteriol., 48: 295-303.
25. Naumov G., Naumova E.S., Gaillardin C. (1993). Genetic and karyotypic identification of wine Saccharomyces bayanus yeast isolated in France and Italy. Syst. Appl. Microbiol., 16: 274-279.
26. Oakey H.J., Gibson L.F., George A.M. (1998). Co-migration of RAPD-PCR amplicons from Aeromonas hydrophila. FEMS Microbiol. Lett., 164: 35-38.
27. Paffetti D., Barberio C., Casalone E., Cavalieri D., Fani R., Fia G., Mori E., Polsinelli M. (1995). DNA fingerprinting by random amplified polymorphic DNA and restriction fragment length polymorphism is useful for yeast typing. Res. Microbiol., 146: 587-594.
28. Phaff H.J. (1984). DNA, enzymes and cell wall. In: Kreger-van Rij, N.J.W. ed, The Yeast, A Taxonomic Study. 3th edn., Elsevier Science Publishers, Amsterdam, pp. 17-24.
29. Querol A., Barrio E., Ramón D. (1992). A comparative study of different methods of yeast strain characterization. Syst. Appl. Microbiol., 15: 439-446.
30. Rodrigues De Sousa M., Madeira-Lopes A., Spencer-Martins I. (1995). The significance of active fructose transport and maximum temperature for growth in the taxonomy of Saccharomyces sensu stricto. Syst. Appl. Microbiol., 18: 44-51.
31. SAS Institute Inc. (1987). SAS/STAT Guide for Personal Computer. 6th edn., SAS Institute Inc. Cary, N. C., USA.
32. Scheda R., Yarrow D. (1966). The instability of physiological properties used as criteria in the taxonomy of the yeasts. Arch. Mikrobiol., 55: 209-225.
33. Scheda R., Yarrow D. (1968). Variations in the fermentative pattern of some Saccharomyces species. Arch. Microbiol., 61: 310-316.
34. Sneat P.H.A., Sokal R.R., eds (1973). Numerical taxonomy. The Principles and the Practice of Numerical Classification. W.H. Freeman & Co, San Francisco.
35. Tornai-Lehoczki J., Gábor P. Dlauchy D., Deák T. (1996). Some remarks on "a taxonomic key for the genus Saccharomyces" (Vaughan-Martini and Martini 1993). Antonie van Leeuwenhoek, 69: 229-233.
36. Torriani S., Zapparoli G., Suzzi G. (1999). Genetic and phenotypic diversity of Saccharomyces sensu stricto strains isolated from Amarone wine. Antonie van Leeuwenhoek, 75: 207-215.
37. Van der Walt J.P. (1970). Saccharomyces Meyen emend. Reess. In: Lodder J., ed, The Yeast, a Taxonomic Study, 2th edn., North-Holland Publishing Co, Amsterdam, pp. 555-718.
38. Vaughan-Martini A. (1989). Saccharomyces paradoxus comb, nov., a newly separated species of the Saccharomyces sensu stricto complex based upon nDNA/nDNA homologies. Syst. Appl. Microbiol., 12: 179-182.
39. Vaughan-Martini A., Kurtzman C.P. (1985). Deoxyribonucleic acid relatedness among species of the genus Saccharomyces sensu stricto. Int. J. Syst. Bacteriol., 35: 508-511.
40. Vaughan-Martini A., Martini, A. (1987). Three newly delimited species of Saccharomyces sensu stricto. Antonie van Leeuwenhoek, 53: 77-84.
41. Vaughan-Martini A., Martini A. (1993). A taxonomic key for the genus Saccharomyces. Syst. Appl. Microbiol., 16: 113-119.
42. Vaughan-Martini A., Martini A., (1998). Saccharomyces Meyen ex Reess. In: Kurtzman C.P., Fell J.W., eds, The Yeast, a Taxonomic Study, 4th edn., Elsevier Science Publishers, Amsterdam, pp. 358-371.
43. Ventura S., Giovannetti L., Gori A., Viti C., Materassi R. (1993). Total DNA restriction pattern and quinone composition of member of the family Ectothiorhodospiraceae. Syst. Appl. Microbiol., 16: 405-410.
44. Viti C., Giovannetti L., Granchi L., Ventura S. (1996). Species attribution and strain typing of Oenococcus oeni (formerly Leuconostoc oenos) with restriction endonuclease fingerprints. Res. Microbiol., 147: 651-660.
45. Xufre A., Simoes F., Clemente A., Gírio F., Amaral-Collaço T. (1998). Screening of specific DNA fingerprints to characterise wine yeast selected strains. In: Abstract Book of 19 ISSY, Yeast in the Production and Spoilage of Food and Beverage. Braga, Portugal, p. 223.
46. Yamamoto N., Yamamoto N., Amemiya H., Yokomori Y., Shimizu K., Totsuka A. (1991). Electrophoretic karyotypes of wine yeast. Am. J. Enol. Vitic., 42: 358-363.
47. Yarrow D. (1984). Saccharomyces Meyen ex Reess. In: Kreger-van Rij N.J.W., ed, The Yeast, a Taxonomic Study, 3th edn., Elsevier Science Publishers, Amsterdam, pp. 379-395.
48. Zambonelli C., Castellari L., Ferruzzi M., Magrini A., Passarelli P., Giudici P., Grazia L., Tini V. (1994). I ceppi criotolleranti di Saccharomyces per il miglioramento e la modificazione della composizione chimica dei vini. Vitivinicoltura, 37: 10-17.