Genome-wide analysis of sex-enriched gene expression during C. elegans larval development

Developmental Biology

Volumn 284, Issue 2, 2005, Pages 500-508

  Thoemke, Kara ^a   Yi, Woelsung ^a   Ross, Jennifer M ^a   Kim, Shinseog ^a   Reinke, Valerie ^b   Zarkower, David ^a  

^a UNIVERSITY OF MINNESOTA MEDICAL SCHOOL   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

C. elegans; Sex determination; Sex enriched; Sexual dimorphism; tra 1

Indexed keywords

COMPLEMENTARY DNA; DNA; MESSENGER RNA; PROTEIN TRA 1; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

ANIMAL TISSUE; ARTICLE; AUTOSOME; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; DEVELOPMENTAL STAGE; DNA MICROARRAY; GENE CONTROL; GENE EXPRESSION; GENETIC TRANSCRIPTION; GENOME; GENOME ANALYSIS; GERM LINE; LARVAL DEVELOPMENT; MALE; NONHUMAN; NUCLEOTIDE BINDING SITE; PARASITE DEVELOPMENT; PRIORITY JOURNAL; PROTEIN FUNCTION; REGULATOR GENE; REPORTER GENE; SEX DIFFERENTIATION; SEXUAL DEVELOPMENT; X CHROMOSOME;

EID: 23944458126     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ydbio.2005.05.017     Document Type: Article

References (34)

1. M.N. Arbeitman, A.A. Fleming, M.L. Siegal, B.H. Null, and B.S. Baker A genomic analysis of Drosophila somatic sexual differentiation and its regulation Development 131 2004 2007 2021
2. M.M. Barr, and P.W. Sternberg A polycystic kidney-disease gene homologue required for male mating behaviour in C. elegans Nature 401 1999 386 389
3. S. Brenner The genetics of Caenorhabditis elegans Genetics 77 1974 71 94
4. W. Chang, C. Tilmann, K. Thoemke, F.H. Markussen, L.D. Mathies, J. Kimble, and D. Zarkower A forkhead protein controls sexual identity of the C. elegans male somatic gonad Development 131 2004 1425 1436
5. A.E. Christiansen, E.L. Keisman, S.M. Ahmad, and B.S. Baker Sex comes in from the cold: the integration of sex and pattern Trends Genet 18 2002 510 516
6. B. Conradt, and H.R. Horvitz The C. elegans protein EGL-1 is required for programmed cell death and interacts with the Bcl-2-like protein CED-9 Cell 93 1998 519 529
7. B. Conradt, and H.R. Horvitz The TRA-1A sex determination protein of C. elegans regulates sexually dimorphic cell deaths by repressing the egl-1 cell death activator gene Cell 98 1999 317 327
8. E.L. Ferguson, and H.R. Horvitz Identification and characterization of 22 genes that affect the vulval cell lineages of the nematode Caenorhabditis elegans Genetics 110 1985 17 72
9. H.B. Ferreira, Y. Zhang, C. Zhao, and S.W. Emmons Patterning of Caenorhabditis elegans posterior structures by the Abdominal-B homolog, egl-5 Dev. Biol. 207 1999 215 228
10. A. Garofalo, M.C. Rowlinson, N.A. Amambua, J.M. Hughes, S.M. Kelly, N.C. Price, A. Cooper, D.G. Watson, M.W. Kennedy, and J.E. Bradley The FAR protein family of the nematode Caenorhabditis elegans. Differential lipid binding properties, structural characteristics, and developmental regulation J. Biol. Chem. 278 2003 8065 8074
11. M. Jiang, J. Ryu, M. Kiraly, K. Duke, V. Reinke, and S.K. Kim Genome-wide analysis of developmental and sex-regulated gene expression profiles in Caenorhabditis elegans Proc. Natl. Acad. Sci. U. S. A. 98 2001 218 223
12. H. Kagoshima, G. Cassata, and T.R. Burglin A Caenorhabditis elegans homeobox gene expressed in the male tail, a link between pattern formation and sexual dimorphism? Dev. Genes Evol. 209 1999 59 62
13. W.G. Kelly, C.E. Schaner, A.F. Dernburg, M.H. Lee, S.K. Kim, A.M. Villeneuve, and V. Reinke X-chromosome silencing in the germline of C. elegans Development 129 2002 479 492
14. P.P. Khil, N.A. Smirnova, P.J. Romanienko, and R.D. Camerini-Otero The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation Nat. Genet. 36 2004 642 646
15. J. Kimble, and D. Hirsh The postembryonic cell lineages of the hermaphrodite and male gonads in Caenorhabditis elegans Dev. Biol. 70 1979 396 417
16. J. Kimble, and S. Ward Germ-line development and fertilization W.B. Wood The Nematode Caenorhabditis Elegans 1988 Cold Spring Harbor Laboratory Cold Spring Harbor, NY 191 214
17. R. Lints, and S.W. Emmons Regulation of sex-specific differentiation and mating behavior in C. elegans by a new member of the DM domain transcription factor family Genes Dev. 16 2002 2390 2402
18. C. Mello, and A. Fire DNA transformation Methods Cell Biol. 48 1995 451 482
19. L.M. Miller, J.D. Plenefisch, L.P. Casson, and B.J. Meyer xol-1: a gene that controls the male modes of both sex determination and X chromosome dosage compensation in C. elegans Cell 55 1988 167 183
20. M. Parisi, R. Nuttall, D. Naiman, G. Bouffard, J. Malley, J. Andrews, S. Eastman, and B. Oliver Paucity of genes on the Drosophila X chromosome showing male-biased expression Science 299 2003 697 700
21. D.S. Portman, and S.W. Emmons Identification of C. elegans sensory ray genes using whole-genome expression profiling Dev. Biol. 270 2004 499 512
22. V. Reinke, H.E. Smith, J. Nance, J. Wang, C. Van Doren, R. Begley, S.J. Jones, E.B. Davis, S. Scherer, S. Ward, and S.K. Kim A global profile of germline gene expression in C. elegans Mol. Cell 6 2000 605 616
23. V. Reinke, I.S. Gil, S. Ward, and K. Kazmer Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans Development 131 2004 311 323
24. P.J. Roy, J.M. Stuart, J. Lund, and S.K. Kim Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans Nature 418 2002 975 979
25. M.M. Shen, and J. Hodgkin Mab-3, a gene required for sex-specific yolk protein expression and a male-specific lineage in C. elegans Cell 54 1988 1019 1031
26. J.E. Sulston, D.G. Albertson, and J.N. Thompson The Caenorhabditis elegans male: postembryonic development of nongonadal structures Dev. Biol. 78 1980 542 576
27. E.R. Troemel, J.H. Chou, N.D. Dwyer, H.A. Colbert, and C.I. Bargmann Divergent seven transmembrane receptors are candidate chemosensory receptors in C. elegans Cell 83 1995 207 218
28. A. Woollard, and J. Hodgkin The Caenorhabditis elegans fate-determining gene mab-9 encodes a T-box protein required to pattern the posterior hindgut Genes Dev. 14 2000 596 603
29. W. Yi, J.M. Ross, and D. Zarkower Mab-3 is a direct tra-1 target gene regulating diverse aspects of C. elegans male sexual development and behavior Development 127 2000 4469 4480
30. R.Y. Yu, C.Q. Nguyen, D.H. Hall, and K.L. Chow Expression of ram-5 in the structural cell is required for sensory ray morphogenesis in Caenorhabditis elegans male tail EMBO J. 19 2000 3542 3555
31. D. Zarkower Establishing sexual dimorphism: conservation amidst diversity? Nat. Rev., Genet. 2 2001 175 185
32. D. Zarkower, and J. Hodgkin Molecular analysis of the C. elegans sex-determining gene tra-1: a gene encoding two zinc finger proteins Cell 70 1992 237 249
33. D. Zarkower, and J. Hodgkin Zinc fingers in sex determination: only one of the two C. elegans Tra-1 proteins binds DNA in vitro Nucleic Acids Res. 21 1993 3691 3698
34. Y. Zhang, C. Ma, T. Delohery, B. Nasipak, B.C. Foat, A. Bounoutas, H.J. Bussemaker, S.K. Kim, and M. Chalfie Identification of genes expressed in C. elegans touch receptor neurons Nature 418 2002 331 335