Functional proteomics and correlated signaling pathway of the thermophilic bacterium Bacillus stearothermophilus TLS33 under cold-shock stress

Proteomics

Volumn 5, Issue 17, 2005, Pages 4456-4471

  Topanurak, Supachai ^a,b   Sinchaikul, Supachok ^a   Sookkheo, Boonyaras ^c   Phutrakuf, Suree ^b   Chen, Shui Tein ^a,d  

^a INSTITUTE OF BIOLOGICAL CHEMISTRY   (Taiwan)

^b CHIANG MAI UNIVERSITY   (Thailand)

^c RANGSIT UNIVERSITY   (Thailand)

^d NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Bacillus stearothermophilus; Cold shock; Signaling pathway; Sporulation; Thermophile

Indexed keywords

ANTI SIGMA B FACTOR; DIHYDROORTHASE; GLUCOSYLTRANSFERASE; MULTIDRUG RESISTANCE PROTEIN; PHOSPHOADENOSINE PHOSPHOSULFATE REDUCTASE; PROTEIN; PROTEIN RIBT; PROTEIN RSFA; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL STRAIN; BIOINFORMATICS; CELL METABOLISM; CELL PROTECTION; COLD; CORRELATION ANALYSIS; DATA BASE; FUNCTIONAL PROTEOMICS; GEOBACILLUS STEAROTHERMOPHILUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN SYNTHESIS; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION; SPOROGENESIS; STRESS; TEMPERATURE; THERMOPHILIC BACTERIUM; TIME; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION; UNINDEXED SEQUENCE;

AMINO ACID SEQUENCE; BACILLUS STEAROTHERMOPHILUS; BACTERIAL PROTEINS; COLD; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ENZYMES; KINETICS; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PROTEOME; PROTEOMICS;

BACTERIA (MICROORGANISMS); GEOBACILLUS STEAROTHERMOPHILUS;

EID: 23744487986     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200401250     Document Type: Article

References (70)

1. Thieringer, H. A., Jones, P. G., Inouye, M., BioEssays 1998, 20, 49-57.
2. Brock, T. D., Madigan, M. T., Biology and Microorganisms, 5th edn., Prentice Hall, Englewood Cliffs 1980, pp. 330-335.
3. Morita, R. Y., Bacteriol. Rev. 1975, 29, 144-167.
4. Graumann, P. L., Marahiel, M. A., Arch. Microbiol. 1996, 166, 293-300.
5. Jones, P. G., VanBogelen, R. A., Neidhardt, F. C., J. Bacteriol. 1987, 169, 2092-2095.
6. La Teana, A., Brandi, A., Falconi, M., Spurio, R., Pon, C. L., Gualerzi, C. O., Proc. Natl. Acad. Sci. USA 1991, 88, 10907-10911.
7. Qing, G., Ma, L. C., Khorchid, A., Swapna, G. V., Mal, T. K., Takayama, M. M., Xia, B. et al., Nat. Biotechnol. 2004, 22, 877-882.
8. Phadtare, S., Inouye, M., J. Bacteriol. 2004, 186, 7007-7014.
9. Wick, L. M., Engli, T., Adv. Biochem. Eng. Biotechnol. 2004, 80, 1-45.
10. Mihoub, F., Mistou, M. Y., Guillot, A., Leveau, J. Y., Boubetra, A., Billaux, F., Int. J. Food Microbiol. 2003, 89, 171-184.
11. Yamanaka, K. J., Mol. Microbiol. Biotechnol. 1999, 1, 193-202.
12. Phadtare, S., Alsina, J., Inouye, M., Curr. Opin. Microbiol. 1999, 2, 175-180.
13. Kaan, T., Homuth, G., Mader, U., Bandow, J., Schweder, T., Microbiol. 2002, 148, 3441-3455.
14. Beckering, C. L, Steil, L., Weber, M. H., Volker, U., Marahiel, M. A., J. Bacteriol. 2002, 284, 6395-6402.
15. Hecker, M., Adv. Biochem. Eng. Biotechnol. 2003, 83, 57-92.
16. Petersohn, A., Brigulla, M., Haas, S., Hoheisel, J. D., Volker, V., Hecker, M., J. Bacteriol. 2001, 183, 5617-5631.
17. Mueller, U., Perl, D., Schmid, F. X., Heinemann, U., J. Mol. Biol. 2000, 297, 975-988.
18. Hasegawa, Y., Kawada, N., Nosoh, Y., Arch. Microbiol. 1980, 126, 103-108.
19. Perl, D., Welker, C., Schindler, T., Schroder, K., Marahiel, M. A., Jaenicke, R., Schmid, F. X., Nat. Struct. Biol. 1998, 5, 229-235.
20. Welker, C., Bohm, G., Schurig, H., Jaenicke, R., Protein Sci. 1999, 8, 394-403.
21. Sinchaikul, S., Sookkheo, B., Pan, F. M., Phutrakul, S., Chen, S. T., Proteomics 2002, 2, 1316-1324.
22. Sinchaikul, S., Sookkheo, B., Topanuruk, S., Juan, H. F., Phutrakul, S., Chen, S. T., J. Chromatogr. B 2002, 771, 261-287.
23. VanBogelen, R. A., Sanker, P., Clark, R. L., Bogan, J. A., Neidhardt, F. C., Electrophoresis 1992, 13, 1014-1054.
24. Pasquali, C., Frutiger, S., Wilkins, M. R., Hughes, G. J., Appel, R. D., Bairoch, A., Schaller, D. et al., Electrophoresis 1996, 17, 547-555.
25. Volker, U., Englemann, S., Maul, B., Reithdorf, S., Volker, A., Schmid, R., Mach, H., Hecker, M., Microbiology 1994, 140, 741-752.
26. Büttner, K., Bernhardt, J., Scharf, C., Schmid, R., Mäder, U., Eymann, C., Antelmann, H. et al., Electrophoresis 2001, 22, 2908-2935.
27. Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F., Wilm, M., Vorm, O., Mortensen, P. et al., Proc. Natl. Acad. Sci. USA 1996, 93, 14440-14445.
28. Movahedi, S., Waites, W., J. Bacteriol. 2002, 184, 5275-5281.
29. Rabilloud, T., Electrophoresis 1998, 19, 758-760.
30. Berggren, K., Chernokalskaya, E., Steinberg, T. H., Kemper, C., Lopez, M. F., Diwu, Z., Haugland, R. P., Patton, W. F., Electrophoresis 2000, 21, 2509-2521.
31. Dainese, P., Staudenmann, W., Ouadroni, M., Korostensky, C., Gonnet, G., Kertesz, M., James, P., Electrophoresis 1997, 18, 432-442.
32. Msadek, T., Trends Microbiol. 1999, 7, 201-207.
33. Kroos, L., Zhang, B., Ichikawa, H., Yu, Y. T. N., Mol. Microbiol. 1999, 31, 1285-1294.
34. Weber, M. H. W., Marahiel, M. A., Sci. Prog. 2003, 86, 9-75.
35. Graumann, P., Schroder, K., Schmid, R., Marahiel, M. A., J. Bacteriol. 1996, 178, 4611-4619.
36. Graumann, P., Wendrich, T. M., Weber, M. H. W., Svhroder, K., Mirahiel, M. A., Mol. Microbiol. 1997, 25, 741-756.
37. Jones, P. G., VanBogelen, R. A., Neidhardt, F. C., J. Bacteriol. 1987, 169, 2092-2095.
38. Haney, P. J., Badger, J. H., Buldak, G. L., Reich, C. I., Woese, C. R., Olsen, G. J., Proc. Natl. Acad. Sci. USA 1999, 96, 3578-3583.
39. Kumar, S., Tsai, C. J., Nussinov, R., Protein Eng. 2000, 13, 179-191.
40. Price, C. W., Fawcett, P., Ceremonie, H., Su, N., Murphy, C. K., Youngman, P., Mol. Microbiol. 2001, 41, 757-774.
41. Benson, A. K., Haldenwang, W. G., J. Bacteriol. 1992, 174, 749-757.
42. Benson, A. K., Haldenwang, W. G., Proc. Natl. Acad. Sci. USA 1993, 90, 2330-2334.
43. Boylan, S. A., Redfield, A. R., Brody, M. S., Price, C. W., J. Bacteriol. 1993, 175, 7931-7937.
44. Volker, U., Voelker, A., Haldenwang, W. G., J. Bacteriol. 1996, 178, 5456-5463.
45. Akbar, S., Gaidenko, T. A., Kang, C. M., O'Reilly, M., Devine, K. M., Price, C. W., J. Bacteriol. 2001, 183, 1329-1338.
46. Dufour, A., Voelker, U., Voelker, A., Haldenwang, W. G., J. Bacteriol. 1996, 178, 3701-3709.
47. Voelker, U., Voelker, A., Maul, B., Hecker, M., Dufour, A., Haldenwang, W. G., J. Bacteriol. 1995, 177, 3771-3780.
48. Kang, C. M., Brody, M. S., Akbar, S., Yang, X., Price, C. W., J. Bacteriol. 1996, 178, 3846-3853.
49. Yang, X. Y., Kang, C. M., Brody, M. S., Price, C. W., Genes Dev. 1996, 10, 2265-2275.
50. Kang, C. M., Vijay, K., Price, C. W., Mol. Microbiol. 1998, 30, 189-196.
51. Hughes, K. T., Mathee, K., Annu. Rev. Microbiol. 1998, 52, 231-286.
52. Voelker, U., Dulfour, A., Haldenwang, W. G., J. Bacteriol. 1995, 177, 114-122.
53. Smirnova, N., Scott, J., Voelker, U., Haldenwang, W. G., J. Bacteriol. 1998, 180, 3671-3680.
54. Qi, Y., Hulett, F. M., J. Bacteriol. 1998, 180, 4007-4010.
55. Haldenwang, W. G., Microbiol. Rev. 1995, 59, 1-30.
56. Hecker, M., Volker, U., Mol. Microbiol. 1998, 29, 1129-1136.
57. Wu, L. J., Errington, J., J. Bacteriol. 2000, 182, 418-424.
58. Ito, M., Guffanti, A. A., Oudega, B., Krulwich, T. A., J. Bacteriol. 1999, 181, 2394-2402.
59. Kosono, S., Ohashi, Y., Kawamura, F., Kitada, M., Kudo, T., J. Bacteriol. 2000, 182, 898-904.
60. Switzer, R. L., Turner, R. J., Lu, Y., Prog. Nucleic Acid Res. Mol. Biol. 1999, 62, 329-367.
61. Scott, J. M., Mitchell, T., Haldenwang, W. G., J. Bacteriol. 2000, 182, 1452-1456.
62. Takami, H., Nakasone, K., Takaki, Y., Maeno, G., Sasaki, R., Masui, N., Fuji, F. et al., Nucleic Acids Res. 2000, 28, 4317-4331.
63. Gusarov, I. I., Kreneva, R. A., Podcharnniaev, D. A., Iomantas, I. V., Akalakina, E. G., Stoinava, N. V., Perumov, D. A., Kozlov, I. I., Mol. Biol. 1997, 31, 446-453.
64. Lee, J. M., Zhang, S., Saha, S., Anna, S. S., Jiang, C., Perkins, J., J. Bacteriol. 2001, 183, 7371-7380.
65. Bresler, S. E., Cherepenko, E. I., Chernik, T. P., Kalinin, V. L., Perumov, D. A., Genetika 1970, 6, 116-124.
66. Bresler, S. E., Cherepenko, E. I., Perumov, D. A., Genetika 1970, 6, 126-139.
67. Glazunov, E. A., Bresler, S. E., Perumov, D. A., Genetika 1974, 10, 83-92.
68. Bresler, S. E., Glazunov, E. A., Perumov, D. A., Chernik, T. P., Genetika 1977, 13, 2007-2016.
69. Bresler, S. E., Gorinchuk, G. F., Chernik, T. P., Perumov, D. A., Genetika 1978, 14, 2082-2090.
70. Grundy, F. J., Henkin, T. M., Mol. Microbiol. 1998, 30, 737-749.