Typing of multiple single-nucleotide polymorphisms using ribonuclease cleavage of DNA/RNA chimeric single-base extension primers and detection by MALDI-TOF mass spectrometry

Analytical Chemistry

Volumn 77, Issue 16, 2005, Pages 5229-5235

  Mengel Jorgensen J ^a   Sanchez, J J ^a   Borsting C ^a   Kirpekar, F ^b   Morling, N ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

CHIMERIC PRIMERS; MATRIX-ASSISTED LASER DESORPTION IONIZATION (MALDI); SINGLE-BASE EXTENSION (SBE); TRIETHYLAMINE;

AMINES; BIOASSAY; DESORPTION; DNA; IONIZATION; LASERS; MASS SPECTROMETRY; MONOMERS; NUCLEIC ACIDS; PURIFICATION; RNA;

GENETIC ENGINEERING;

BIOTIN; DNA; OLIGONUCLEOTIDE; RIBONUCLEASE; RNA;

ARTICLE; ASSAY; CHIMERA; DNA SEQUENCE; ENZYME ACTIVITY; HUMAN; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; POLYMERASE CHAIN REACTION; SINGLE BASE EXTENSION ASSAY; SINGLE NUCLEOTIDE POLYMORPHISM; SPECTROMETER;

BASE SEQUENCE; DNA PRIMERS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, SINGLE NUCLEOTIDE; RIBONUCLEASES; RNA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 23744439435     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac0502044     Document Type: Article

References (25)

1. Shahgholi, M.; Garcia, B. A.; Chiu, N. H. L.; Heaney, P. J.; Tang, K. Nucleic Acids Res. 2001, 29, E91.
2. Fei, Z.; Ono, T.; Smith L. M. Nucleic Acids Res. 1998, 26, 2827-2828.
3. Mengel-Jørgensen, J.; Sanchez, J. J.; Børsting, C.; Kirpekar, F.; Morling, N. Anal. Chem. 2004, 76, 6039-6045.
4. Sun, X.; Ding, H.; Hung, K.; Guo, B. Nucleic Acids Res. 2000, 28, E68.
5. Kostrzewa, M.; Elssner, T.; Fahr, K.; Wenzel, T. 50th ASMS Conference on Mass Spectrometry, Orlando, FL, 2002; http://www.inmerged.com/aspfolder/ ASMSarcresults.asp.
6. Li, J.; Butler, J. M.; Tan, Y.; Un, H.; Royer, S.; Ohler, L.; Shaler, T. A.; Hunter, J. M.; Pollart, D. J.; Monforte, J. A.; Becker, C. H. Electrophoresis 1999, 20, 1258-1265.
7. Sauer, S.; Lechner, D.; Berlin, K.; Lehrach, H.; Escary, J. L.; Fox, N.; Gut, I. G. Nucleic Acids Res. 2000, 28, e13.
8. Sauer, S.; Lechner, D.; Berlin, K.; Plancon, C.; Heuermann, A.; Lehrach, H.; Gut, I. G. Nucleic Acids Res. 2000, 28, e100.
9. Sanchez, J. J.; Børsting, C.; Hallenberg, C.; Buchard, A.; Hernandez, A.; Morling, N. Forensic Sci. Int. 2003, 137, 74-84.
10. Sanchez, J. J.; Børsting, C.; Morling N. Methods Mol. Biol. 2005, 297, 209-228.
11. Kirpekar, F.; Nordhoff, E.; Larsen, L. K.; Kristiansen, K.; Roepstorff, P.; Hillenkamp, F. Nucleic Acids Res. 1998, 26, 2554-2559.
12. Nordhoff, E.; Ingendoh, A.; Cramer, R.; Overberg, A.; Stahl, B.; Karas, M.; Hillenkamp, F.; Crain, P. F. Rapid Commun. Mass Spectrom. 1992, 6, 771-776.
13. Raines, R. T. Chem. Rev. 1998, 98, 1045-1066.
14. Backmann, J.; Doray, C. C.; Grunert, H. P.; Landt, O.; Hahn, U. Biochem. Biophys. Res. Commun. 1994, 199, 213-2199.
15. Erratum in: Biochem. Biophys. Res. Commun. 203, 1362.
16. Heinemann, U.; Saenger, W. J. Biomol. Struct. Dyn. 1983, 1, 523-538.
17. Deshpande, R. A.; Shankar, V. Crit. Rev. Microbiol. 2002, 28, 79-122.
18. Struhalla, M.; Czaja, R.; Hahn, U. Chembiochem 2004, 5, 200-205.
19. Czaja, R.; Struhalla, M.; Hoschler, K.; Saenger, W.; Strater, N.; Hahn, U. Biochemistry 2004, 43, 2854-2862.
20. Sanchez, J. J.; Brion, M.; Parson, W.; Blanco-Verea, A. J.; Børsting, C.; Lareu, M.; Niederstätter, H.; Oberacher, H.; Morling, N.; Carrecedo, A. Forensic Sci. M. 2004, 140, 241-250.
21. Kim, S.; Edwards, J. R.; Deng, L.; Chung, W.; Ju, J. Nucleic Acids Res. 2002, 30, e85.
22. Jenkins, L. A.; Bashkin, J. A.; Autry, M. E. J. Am. Chem. Soc. 1996, 118, 6822-6825.
23. Tost, J.; Gut, I. G. Mass Spectrom. Rev. 2000, 21, 388-418.
24. Haff, L. A.; Smirnov, I. P. Genome Res. 1997, 7, 378-388.
25. Jobling, M. A.; Tyler-Smith, C. Nat. Rev. Genet. 2003, 4, 598-612.