Single nucleotide polymorphism determination using primer extension and time-of-flight mass spectrometry

Electrophoresis

Volumn 20, Issue 6, 1999, Pages 1258-1265

  Li, Jia ^a   Butler, John M ^a,b   Tan, Yuping ^a   Lin, H ^a   Royer, Stephanie ^a   Ohler, Lynne ^a   Shaler, Thomas A ^a   Hunter, Joanna M ^a   Pollart, Daniel J ^a   Monforte, Joseph A ^a   Becker, Christopher H ^a  

^a GeneTrace Systems Inc   (United States)

^b NONE   (United States)

Author keywords

Heterozygote determination; High throughput DNA analysis; Mitochondrial DNA; Single nucleotide polymorphism; Time of flight mass spectrometry

Indexed keywords

AUTOMATION; COST EFFECTIVENESS; DIAGNOSIS; DNA; GENES; MASS SPECTROMETRY; NUCLEOTIDES; THROUGHPUT;

DNA ANALYSIS; GENETIC MARKERS; HETEROZYGOTE DETERMINATION; HIGH-THROUGHPUT; HIGH-THROUGHPUT DNA ANALYSE; MITOCHONDRIAL DNA; PRIMER EXTENSION; SINGLE NUCLEOTIDE POLYMORPHISM SITES; SINGLE NUCLEOTIDE POLYMORPHISMS; TIME OF FLIGHT MASS SPECTROMETRY;

POLYMERASE CHAIN REACTION;

MITOCHONDRIAL DNA;

CONFERENCE PAPER; COST EFFECTIVENESS ANALYSIS; DNA DETERMINATION; GENE FREQUENCY; GENE MAPPING; GENETIC MARKER; HETEROZYGOSITY; HUMAN;

EID: 0033020685     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1522-2683(19990101)20:6<1258::AID-ELPS1258>3.0.CO;2-V     Document Type: Conference Paper

References (28)

1. Kruglyak, L., Nature Genet. 1997, 17, 21-24.
2. Landegren, U., Nilsson, M., Kwok, P.-Y., Genome Res. 1998, 8, 769-776.
3. Wang, D. G., Fan, J.-B., Siao, C.-J., Berno, A., Young, P., Sapolsky, R., Ghandour, G., Perkins, N., Winchester, E., Spencer, J., Kruglyak, L., Stein, K., Hsie, L., Topaloglou, T., Mubbell, E., Robinson, E., Mittmann, M., Morris, M. S., Shen, N., Kilburn, D., Rioux, J., Nusbaum, C., Rozen, S., Hudson, T. J., Lipshutz, R., Chee, M., Lander, E. S., Science 1998, 280, 1077-1082.
4. Delahunty, C., Ankener, W., Deng, Q., Eng, J., Nickerson, D. A., Am. J. Hum. Genet. 1996, 58, 1239-1246.
5. Cooper, D. N., Smith, B. A., Cooke, H. J., Niemann, S., Schmidtke, J., Hum. Genet. 1985, 69, 201-205.
6. Kwok, P.-Y., Carlson, C., Yager, T. D., Ankener, W., Nickerson, D. A., Genomics 1994, 23, 138-144.
7. Nollau, P., Wagener, C., Clin. Chem. 1997, 43, 1114-1128.
8. Underhill, P. A., Jin, L., Lin, A. A., Mehdi, S. Q., Jenkins, T., Vollrath, D., Davis, R. W., Cavalli-Sforza, L. L., Oefner, P. J., Genome Res. 1997, 7, 996-1005.
9. Nikiforov, T. T., Rendle, R. B., Goelet, P., Rogers, Y.-H., Kotewicz, M. L., Anderson, S., Trainor, G. L., Knapp, M. R., Nucleic Acids Res. 1994, 22, 4167-4175.
10. Chen, X., Zehnbauer, B., Gnirke, A., Kwok, P.-Y., Proc. Natl. Acad. Sci. USA 1997, 94, 10756-10761.
11. Piggee, C. A., Muth, J., Carrilho, E., Karger, B. L., J. Chromatogr. A 1997, 781, 367-375.
12. Tully, G., Sullivan, K. M., Nixon, P., Stones, R. E., Gill, P., Genomics 1996, 34, 107-113.
13. Haff, L. A., Smirnov, I. P., Genome Res. 1997, 7, 378-388.
14. Giesendorf, B. A. J., Vet, J. A. M., Tyagi, S., Mensink, E. J. M. G., Trijbels, F. J. M., Blom, H. J., Clin. Chem. 1998, 44, 482-486.
15. Livak, K. J., Flood, S. J. A., Marmaro, J., Giusti, W., Deetz, K., PCR Methods Appl. 1995, 4, 357-362.
16. Monforte, J. A., Becker, C. H., Nature Med. 1997, 3, 360-362.
17. Little, D. P., Braun, A., O'Donnell, M. J., Koster, H., Nature Med. 1997, 3, 1413-1416.
18. Little, D. P., Braun, A., Darnhofer-Demar, B., Frilling, A., Li, Y., McIver, R. T., Koster, H., J. Mol. Med. 1997, 75, 745-750.
19. Haff, L. A., Smirnov, I. P., Nucleic Acids Res. 1997, 25, 3749-3750.
20. Fei, Z., Ono, T., Smith, L. M., Nucleic Acids Res. 1998, 26, 2827-2828.
21. Ross, P. L., Lee, K., Belgrader, P., Anal. Chem. 1997, 69, 4197-4202.
22. Jiang-Baucom, P., Girard, J. E., Butler, J. M., Belgrader, P., Anal. Chem. 1997, 69, 4894-4898.
23. Griffin, T. J., Tang, W., Smith, L. M., Nature Biotechnol. 1997, 15, 1368-1372.
24. Shaler, T. A., Wickham, J. N., Sannes, K. W., Wu, K. J., Becker, C. H., Anal. Chem. 1996, 68, 576-579.
25. Wu, K. J., Steding, A., Becker, C. H., Rapid Commun. Mass Spectrom. 1993, 7, 142-146.
26. Wu, K. J., Shaler, T. A., Becker, C. H., Anal. Chem. 1994, 66, 1637-1645.
27. Monforte, J. A., Becker, C. H., Shaler, T. A., Pollart, D. J., US Patent 5, 700, 642 (1997).
28. Jurinke, C., van der Boom, D., Jacob, A., Tang, K., Worl, R., Koster, H., Anal. Biochem. 1996, 237, 174-181.