Psoralen interstrand cross-link repair is specifically altered by an adjacent triple-stranded structure

Nucleic Acids Research

Volumn 32, Issue 3, 2004, Pages 1143-1153

  Guillonneau, F ^b   Guieysse, A L ^b   Nocentini, S ^a   Giovannangeli, C ^b   Praseuth, D ^b  

^a CNRS   (France)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA REPAIR PROTEIN; NUCLEIC ACID BINDING PROTEIN; OLIGONUCLEOTIDE; PSORALEN; UNCLASSIFIED DRUG; CROSS LINKING REAGENT; DNA BINDING PROTEIN; TRIPLEX DNA; XERODERMA PIGMENTOSUM GROUP A PROTEIN; XPA PROTEIN, HUMAN;

ARTICLE; CELL ACTIVITY; CONTROLLED STUDY; DNA CROSS LINKING; DNA DAMAGE; DNA MODIFICATION; DNA REPAIR; DNA STRAND; DNA STRUCTURE; EXCISION REPAIR; GENE TARGETING; GENETIC RECOMBINATION; HELA CELL; HUMAN; HUMAN CELL; IN VITRO STUDY; INHIBITION KINETICS; MAMMAL CELL; MUTAGENESIS; PHOTOACTIVATION; PRIORITY JOURNAL; PROTEIN BINDING; BIOSYNTHESIS; DRUG EFFECT; METABOLISM;

MAMMALIA;

CROSS-LINKING REAGENTS; DNA; DNA REPAIR; DNA-BINDING PROTEINS; FICUSIN; HELA CELLS; HUMANS; XERODERMA PIGMENTOSUM GROUP A PROTEIN;

EID: 2342647391     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh267     Document Type: Article

References (41)

1. Faria,M. and Giovannangeli,C. (2001) Triplex-forming molecules: from concepts to applications. J. Gene Med., 3, 299-310.
2. Knauert,M.P. and Glazer,P.M. (2001) Triplex forming oligonucleotides: sequence-specific tools for gene targeting. Hum. Mol. Genet., 10, 2243-2251.
3. Seidman,M.M. and Glazer,P.M. (2003) The potential for gene repair via triple helix formation. J. Clin. Invest., 112, 487-494.
4. De Silva,I.U., McHugh,P.J., Clingen,P.H. and Hartley,J.A. (2000) Defining the roles of nucleotide excision repair and recombination in the repair of DNA interstrand cross-links in mammalian cells. Mol. Cell. Biol., 20, 7980-7990.
5. Wang,G., Chen,Z., Zhang,S., Wilson,G.L. and Jing,K. (2001) Detection and determination of oligonucleotide triplex formation-mediated transcription-coupled DNA repair in HeLa nuclear extracts. Nucleic Acids Res., 29, 1801-1807.
6. Li,L., Peterson,C.A., Lu,X., Wei,P. and Legerski,R.J. (1999) Interstrand cross-links induce DNA synthesis in damaged and undamaged plasmids in mammalian cell extracts. Mol. Cell. Biol., 19, 5619-5630.
7. Zhang,N., Lu,X., Zhang,X., Peterson,C.A. and Legerski,R.J. (2002) hMutSbeta is required for the recognition and uncoupling of psoralen interstrand cross-links in vitro. Mol. Cell. Biol., 22, 2388-2397.
8. Kumaresan,K.R., Hang,B. and Lambert,M.W. (1995) Human endonucleolytic incision of DNA 3′ and 5′ to a site-directed psoralen monoadduct and interstrand cross-link. J. Biol. Chem., 270, 30709-30716.
9. Bessho,T., Mu,D. and Sancar,A. (1997) Initiation of DNA interstrand cross-link repair in humans: the nucleotide excision repair system makes dual incisions 5′ to the cross-linked base and removes a 22- to 28-nucleotide-long damage-free strand. Mol. Cell. Biol., 17, 6822-6830.
10. Guieysse,A.L., Praseuth,D., Giovannangeli,C., Asseline,U. and Hélène,C. (2000) Psoralen adducts induced by triplex-forming oligonucleotides are refractory to repair in HeLa cells. J. Mol. Biol., 296, 373-383.
11. Kuraoka,I., Kobertz,W.R., Ariza,R.R., Biggerstaff,M., Essigmann,J.M. and Wood,R.D. (2000) Repair of an interstrand DNA cross-link initiated by ERCC1-XPF repair/recombination nuclease J. Biol. Chem., 275, 26632-26636.
12. Mu,D., Bessho,T., Nechev,L.V., Chen,D.J., Harris,T.M., Hearst,J.E. and Sancar,A. (2000) DNA interstrand cross-links induce futile repair synthesis in mammalian cell extracts. Mol. Cell. Biol., 20, 2446-2454.
13. Barre,F.X., Asseline,U. and Harel-Bellan,A. (1999) Asymmetric recognition of psoralen interstrand crosslinks by the nucleotide excision repair and the error-prone repair pathways. J. Mol. Biol., 286, 1379-1387.
14. Faruqi,A.F., Datta,H.J., Carroll,D., Seidman,M.M. and Glazer,P.M. (2000) Triple-helix formation induces recombination in mammalian cells via a nucleotide excision repair-dependent pathway. Mol. Cell. Biol., 20, 990-1000.
15. Raha,M., Wang,G., Seidman,M.M. and Glazer,P.M. (1996) Mutagenesis by third-strand-directed psoralen adducts in repair-deficient human cells: high frequency and altered spectrum in a xeroderma pigmentosum variant. Proc. Natl Acad. Sci. USA, 93, 2941-2946.
16. Wang,G., Seidman,M.M. and Glazer,P.M. (1996) Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair. Science, 271, 802-805.
17. Wang,G. and Glazer,P.M. (1995) Altered repair of targeted psoralen photoadducts in the context of an oligonucleotide-mediated triple helix. J. Biol. Chem., 270, 22595-22601.
18. Giovannangeli,C., Perrouault,L., Escude,C., Nguyen,T. and Hélène,C. (1996) Specific inhibition of in vitro transcription elongation by triplexforming oligonucleotide-intercalator conjugates targeted to HIV proviral DNA. Biochemistry, 35, 10539-10548.
19. Giovannangeli,C., Thuong,N.T. and Hélène,C. (1992) Oligodeoxynucleotide-directed photo-induced cross-linking of HIV proviral DNA via triple-helix formation. Nucleic Acids Res., 20, 4275-4281.
20. Wood,R.D., Robins,P. and Lindahl,T. (1988) Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts. Cell, 53, 97-106.
21. Faria,M., Wood,C.D., Perrouault,L., Nelson,J.S., Winter,A., White,M.R., Hélène,C. and Giovannangeli,C. (2000) Targeted inhibition of transcription elongation in cells mediated by triplex-forming oligonucleotides. Proc. Natl Acad. Sci. USA, 97, 3862-3867.
22. Faria,M., Wood,C.D., White,M.R., Hélène,C. and Giovannangeli,C. (2001) Transcription inhibition induced by modified triple helix-forming oligonucleotides: a quantitative assay for evaluation in cells. J. Mol. Biol., 306, 15-24.
23. Saijo,M., Kuraoka,I., Masutani,C., Hanaoka,F. and Tanaka,K. (1996) Sequential binding of DNA repair proteins RPA and ERCC1 to XPA in vitro. Nucleic Acids Res., 24, 4719-4724.
24. Nocentini,S., Coin,F., Saijo,M., Tanaka,K. and Egly,J.M. (1997) DNA damage recognition by XPA protein promotes efficient recruitment of transcription factor II H. J. Biol. Chem., 272, 22991-22994.
25. Missura,M., Buterin,T., Hindges,R., Hubscher,U., Kasparkova,J., Brabec,V. and Naegeli,H. (2001) Double-check probing of DNA bending and unwinding by XPA-RPA: an architectural function in DNA repair. EMBO J., 20, 3554-3564.
26. Vasquez,K.M., Christensen,J., Li,L., Finch,R.A. and Glazer,P.M. (2002) Human XPA and RPA DNA repair proteins participate in specific recognition of triplex-induced helical distortions. Proc. Natl Acad. Sci. USA, 99, 5849-5853.
27. Wakasugi,M. and Sancar,A. (1998) Assembly, subunit composition and footprint of human DNA repair excision nuclease. Proc. Natl Acad. Sci. USA, 95, 6669-6674.
28. Jones,C.J. and Wood,R.D. (1993) Preferential binding of the xeroderma pigmentosum group A complementing protein to damaged DNA. Biochemistry, 32, 12096-12104.
29. Moggs,J.G., Szymkowski,D.E., Yamada,M., Karran,P. and Wood,R.D. (1997) Differential human nucleofide excision repair of paired and mispaired cisplatin-DNA adducts. Nucleic Acids Res., 25, 480-491.
30. Branum,M.E., Reardon,J.T. and Sancar,A. (2001) DNA repair excision nuclease attacks undamaged DNA. A potential source of spontaneous mutations. J. Biol. Chem., 276, 25421-25426.
31. Coudore,F., Calsou,P. and Salles,B. (1997) DNA repair activity in protein extracts from rat tissues. FEBS Lett., 414, 581-584.
32. Takasugi,M., Guendouz,A., Chassignol,M., Decout,J.L., Lhomme,J., Thuong,N.T. and Hélène,C. (1991) Sequence-specific photo-induced cross-linking of the two strands of double-helical DNA by a psoralen covalently linked to a triple helix-forming oligonucleotide. Proc. Natl Acad. Sci. USA, 88, 5602-5606.
33. Guieysse,A.L., Praseuth,D., Grigoriev,M., Harel-Bellan,A. and Hélène,C. (1996) Detection of covalent triplex within human cells. Nucleic Acids Res., 24, 4210-4216.
34. Giovannangeli,C., Thuong,N.T. and Hélène,C. (1993) Oligonucleotide clamps arrest DNA synthesis on a single-stranded DNA target. Proc. Natl Acad. Sci. USA, 90, 10013-10017.
35. Volker,M., Mone,M.J., Karmakar,P., van Hoffen,A., Schul,W., Vermeulen,W., Hoeijmakers,J.H., van Driel,R., van Zeeland,A.A. and Mullenders,L.H. (2001) Sequential assembly of the nucleotide excision repair factors in vivo. Mol. Cell, 8, 213-224.
36. Wakasugi,M. and Sancar,A. (1999) Order of assembly of human DNA repair excision nuclease. J. Biol. Chem., 274, 18759-18768.
37. Araujo,S.J. and Wood,R.D. (1999) Protein complexes in nucleotide excision repair. Mutat. Res., 435, 23-33.
38. Escudé,C., Giovannangeli,C., Sun,J.S., Lloyd,D.H., Gryaznov,S.M., Garestier,T. and Hélène,C. (1996) Stable triple helices formed by oligonucleotide N3′ → P5′ phosphoramidates inhibit transcription elongation. Proc. Natl Acad. Sci. USA, 93, 4365-4369.
39. Duval-Valentin,G., Takasugi,M., Hélène,C. and Sage,E. (1998) Triple helix-directed psoralen crosslinks are recognized by Uvr(A)BC excinuclease. J. Mol. Biol., 278, 815-825.
40. Woodgate,R. (1999) A plethora of lesion-replicating DNA polymerases. Genes Dev., 13, 2191-2195.
41. McHugh,P.J., Sones,W.R. and Hartley,J.A. (2000) Repair of intermediate structures produced at DNA interstrand cross-links in Saccharomyces cerevisiae. Mol. Cell. Biol., 20, 3425-3433.