메뉴 건너뛰기




Volumn 20, Issue 6, 2004, Pages 863-873

Optimizing substitution matrices by separating score distributions

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BAYES THEOREM; BIOINFORMATICS; CONTROLLED STUDY; GENE CLUSTER; GENETIC ALGORITHM; GENETIC DATABASE; PRIORITY JOURNAL; SCORING SYSTEM; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; STATISTICAL ANALYSIS;

EID: 2342428875     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg494     Document Type: Article
Times cited : (12)

References (27)
  • 2
    • 0035863762 scopus 로고    scopus 로고
    • The estimation of statistical parameters for local alignment score distributions
    • Altschul,S., Bundschuh,R., Olsen,R. and Hwa,T. (2001) The estimation of statistical parameters for local alignment score distributions. Nucleic Acids Res., 29(2), 351-361.
    • (2001) Nucleic Acids Res. , vol.29 , Issue.2 , pp. 351-361
    • Altschul, S.1    Bundschuh, R.2    Olsen, R.3    Hwa, T.4
  • 3
    • 0004493166 scopus 로고    scopus 로고
    • On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems
    • Amaldi,E. and Kann,V. (1998) On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems. Theoret. Comput. Sci., 209, 237-260.
    • (1998) Theoret. Comput. Sci. , vol.209 , pp. 237-260
    • Amaldi, E.1    Kann, V.2
  • 4
    • 0035991777 scopus 로고    scopus 로고
    • Estimating and evaluating the statistics of gapped local-alignment scores
    • Bailey,T.L. and Gribskov,M. (2002) Estimating and evaluating the statistics of gapped local-alignment scores. J. Comput. Biol., 9(3), 575-593.
    • (2002) J. Comput. Biol. , vol.9 , Issue.3 , pp. 575-593
    • Bailey, T.L.1    Gribskov, M.2
  • 6
    • 0032568596 scopus 로고    scopus 로고
    • Assessing comparison methods with reliable structurally identified distant evolutionary relationships
    • Brenner,S.E., Chothia,C. and Hubbard,T.J.P. (1998) Assessing comparison methods with reliable structurally identified distant evolutionary relationships. Proc. Natl Acad. Sci., USA, 95, 6073-6078.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 6073-6078
    • Brenner, S.E.1    Chothia, C.2    Hubbard, T.J.P.3
  • 7
    • 0033977581 scopus 로고    scopus 로고
    • The ASTRAL compendium for sequence and structure analysis
    • Brenner,S.E., Koehl,P. and Levitt,M. (2000) The ASTRAL compendium for sequence and structure analysis. Nucleic Acids Res., 28, 254-256.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 254-256
    • Brenner, S.E.1    Koehl, P.2    Levitt, M.3
  • 11
    • 49949150022 scopus 로고
    • Language identification in the limit
    • Gold,E.M. (1967) Language identification in the limit. Informat. Control, 10, 447-474.
    • (1967) Informat. Control , vol.10 , pp. 447-474
    • Gold, E.M.1
  • 12
    • 0026656815 scopus 로고
    • Exhaustive matching of the entire protein sequence database
    • Gonnet,G.H., Cohen,M.A. and Benner,S.A (1992) Exhaustive matching of the entire protein sequence database. Science, 256, 1443-1445.
    • (1992) Science , vol.256 , pp. 1443-1445
    • Gonnet, G.H.1    Cohen, M.A.2    Benner, S.A.3
  • 13
    • 0001969211 scopus 로고    scopus 로고
    • Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
    • Gribskov,M. and Robinson,N.L. (1996) Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Comput. Chem., 20, 25-33.
    • (1996) Comput. Chem. , vol.20 , pp. 25-33
    • Gribskov, M.1    Robinson, N.L.2
  • 14
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff,S. and Henikoff,J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci., USA, 89, 10915-10919.
    • (1992) Proc. Natl. Acad. Sci., USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 15
    • 0027317580 scopus 로고
    • Performance evaluation of amino acid substitution matrices
    • Henikoff,S. and Henikoff,J.G. (1993) Performance evaluation of amino acid substitution matrices. Proteins, 17, 49-61.
    • (1993) Proteins , vol.17 , pp. 49-61
    • Henikoff, S.1    Henikoff, J.G.2
  • 16
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones,D.T., Taylor,W.R. and Thornton,J.M. (1992) The rapid generation of mutation data matrices from protein sequences. CABIOS, 8, 275-282.
    • (1992) CABIOS , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 17
    • 0034562066 scopus 로고    scopus 로고
    • Optimization of a new score function for the detection of remote homologs
    • Kann,M., Qian,B. and Goldstein,R.A. (2000) Optimization of a new score function for the detection of remote homologs. Proteins, 41, 498-503.
    • (2000) Proteins , vol.41 , pp. 498-503
    • Kann, M.1    Qian, B.2    Goldstein, R.A.3
  • 18
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karin,S. and Altschul,S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci., USA, 87, 2264-2268.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 2264-2268
    • Karin, S.1    Altschul, S.F.2
  • 21
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia,C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 23
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
    • Pearson,W.R. (1991) Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics, 11, 635-650.
    • (1991) Genomics , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 25
    • 0019887799 scopus 로고
    • Identification of molecular subsequences
    • Smith,T.F. and Waterman,M.S. (1981) Identification of molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 26
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov,R.L., Koonin,E.V. and Lipman,D.J. (1997) A genomic perspective on protein families. Science, 278(5338), 631-637.
    • (1997) Science , vol.278 , Issue.5338 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.