-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S., Gish,W., Miller,W., Myers,E. and Lipman,D. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
2
-
-
0035863762
-
The estimation of statistical parameters for local alignment score distributions
-
Altschul,S., Bundschuh,R., Olsen,R. and Hwa,T. (2001) The estimation of statistical parameters for local alignment score distributions. Nucleic Acids Res., 29(2), 351-361.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.2
, pp. 351-361
-
-
Altschul, S.1
Bundschuh, R.2
Olsen, R.3
Hwa, T.4
-
3
-
-
0004493166
-
On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems
-
Amaldi,E. and Kann,V. (1998) On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems. Theoret. Comput. Sci., 209, 237-260.
-
(1998)
Theoret. Comput. Sci.
, vol.209
, pp. 237-260
-
-
Amaldi, E.1
Kann, V.2
-
4
-
-
0035991777
-
Estimating and evaluating the statistics of gapped local-alignment scores
-
Bailey,T.L. and Gribskov,M. (2002) Estimating and evaluating the statistics of gapped local-alignment scores. J. Comput. Biol., 9(3), 575-593.
-
(2002)
J. Comput. Biol.
, vol.9
, Issue.3
, pp. 575-593
-
-
Bailey, T.L.1
Gribskov, M.2
-
5
-
-
0011542799
-
The Pfam protein families database
-
Bateman,A., Birney,E., Cerruti,L., Durbin,R., Etwiller,L., Eddy,S.R., Grifths-Jones,S., Howe,K.L., Marshall,M. and Sonnhammer,E.L.L. (2002) The Pfam protein families database. Nucleic Acids Res., 30(1), 276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.1
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Grifths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.L.10
-
6
-
-
0032568596
-
Assessing comparison methods with reliable structurally identified distant evolutionary relationships
-
Brenner,S.E., Chothia,C. and Hubbard,T.J.P. (1998) Assessing comparison methods with reliable structurally identified distant evolutionary relationships. Proc. Natl Acad. Sci., USA, 95, 6073-6078.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 6073-6078
-
-
Brenner, S.E.1
Chothia, C.2
Hubbard, T.J.P.3
-
7
-
-
0033977581
-
The ASTRAL compendium for sequence and structure analysis
-
Brenner,S.E., Koehl,P. and Levitt,M. (2000) The ASTRAL compendium for sequence and structure analysis. Nucleic Acids Res., 28, 254-256.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 254-256
-
-
Brenner, S.E.1
Koehl, P.2
Levitt, M.3
-
8
-
-
0036089049
-
ASTRAL compendium enhancements
-
Chandonia,J.M., Walker,N.S., Lo Conte,L., Koehl,P., Levitt,M. and Brenner,S.E. (2002) ASTRAL compendium enhancements. Nucleic Acids Res., 30, 260-263.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 260-263
-
-
Chandonia, J.M.1
Walker, N.S.2
Lo Conte, L.3
Koehl, P.4
Levitt, M.5
Brenner, S.E.6
-
9
-
-
0000228203
-
A Model of Evolutionary Change in Proteins
-
Dayhoff,M.O., Schwartz,R.M. and Orcutt,B.C. (1978) A Model of Evolutionary Change in Proteins. Atlas Prot. Seq. Struct., 5(Suppl. 3), 345-352.
-
(1978)
Atlas Prot. Seq. Struct.
, vol.5
, Issue.SUPPL. 3
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
11
-
-
49949150022
-
Language identification in the limit
-
Gold,E.M. (1967) Language identification in the limit. Informat. Control, 10, 447-474.
-
(1967)
Informat. Control
, vol.10
, pp. 447-474
-
-
Gold, E.M.1
-
12
-
-
0026656815
-
Exhaustive matching of the entire protein sequence database
-
Gonnet,G.H., Cohen,M.A. and Benner,S.A (1992) Exhaustive matching of the entire protein sequence database. Science, 256, 1443-1445.
-
(1992)
Science
, vol.256
, pp. 1443-1445
-
-
Gonnet, G.H.1
Cohen, M.A.2
Benner, S.A.3
-
13
-
-
0001969211
-
Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
-
Gribskov,M. and Robinson,N.L. (1996) Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Comput. Chem., 20, 25-33.
-
(1996)
Comput. Chem.
, vol.20
, pp. 25-33
-
-
Gribskov, M.1
Robinson, N.L.2
-
14
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff,S. and Henikoff,J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci., USA, 89, 10915-10919.
-
(1992)
Proc. Natl. Acad. Sci., USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
15
-
-
0027317580
-
Performance evaluation of amino acid substitution matrices
-
Henikoff,S. and Henikoff,J.G. (1993) Performance evaluation of amino acid substitution matrices. Proteins, 17, 49-61.
-
(1993)
Proteins
, vol.17
, pp. 49-61
-
-
Henikoff, S.1
Henikoff, J.G.2
-
16
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones,D.T., Taylor,W.R. and Thornton,J.M. (1992) The rapid generation of mutation data matrices from protein sequences. CABIOS, 8, 275-282.
-
(1992)
CABIOS
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
17
-
-
0034562066
-
Optimization of a new score function for the detection of remote homologs
-
Kann,M., Qian,B. and Goldstein,R.A. (2000) Optimization of a new score function for the detection of remote homologs. Proteins, 41, 498-503.
-
(2000)
Proteins
, vol.41
, pp. 498-503
-
-
Kann, M.1
Qian, B.2
Goldstein, R.A.3
-
18
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karin,S. and Altschul,S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci., USA, 87, 2264-2268.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 2264-2268
-
-
Karin, S.1
Altschul, S.F.2
-
21
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia,C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
23
-
-
0025950944
-
Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
-
Pearson,W.R. (1991) Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics, 11, 635-650.
-
(1991)
Genomics
, vol.11
, pp. 635-650
-
-
Pearson, W.R.1
-
24
-
-
0004161838
-
-
Cambridge University Press
-
Press,W.H., Teukolsky,S.A., Vetterling,W.T. and Flannery,B.P. (1993) Numerical Recipes in C. Cambridge University Press.
-
(1993)
Numerical Recipes in C
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
25
-
-
0019887799
-
Identification of molecular subsequences
-
Smith,T.F. and Waterman,M.S. (1981) Identification of molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
26
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov,R.L., Koonin,E.V. and Lipman,D.J. (1997) A genomic perspective on protein families. Science, 278(5338), 631-637.
-
(1997)
Science
, vol.278
, Issue.5338
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
27
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov,R.L., Natale,D.A., Garkavtsev,I.V., Tatusova,T.A., Shankavaram,U.T., Rao,B.S., Kiryutin,B., Galperin,M.Y., Fedorova,N.D. and Koonin,E.V. (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res., 29(1), 22-28.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.1
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
|