Bacillus subtilis τ subunit of DNA polymerase III interacts with bacteriophage SPP1 replicative DNA helicase G40P

Nucleic Acids Research

Volumn 30, Issue 23, 2002, Pages 5056-5064

  Martínez Jiménez, María I ^a   Mesa, Pablo ^a   Alonso, Juan C ^a  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; DIMER; DNA; DNA DIRECTED DNA POLYMERASE GAMMA; HELICASE; NUCLEOTIDE; SINGLE STRANDED DNA; TETRAMER;

AMINO TERMINAL SEQUENCE; BACILLUS SUBTILIS; BACTERIOPHAGE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DNA REPLICATION; GENETIC CODE; IONIC STRENGTH; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; REPLICON; REVIEW; STOICHIOMETRY;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; BACILLUS SUBTILIS; BACTERIAL PROTEINS; BACTERIOPHAGES; DNA; DNA HELICASES; DNA POLYMERASE III; HISTIDINE; MUTATION; PROTEIN STRUCTURE, TERTIARY; PROTEIN SUBUNITS; VIRAL PROTEINS; VIRUS REPLICATION;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); POSIBACTERIA;

EID: 0036930209     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf650     Document Type: Review

References (40)

1. Jacob,F., Brenner,S. and Cuzin,F. (1963) On the regulation of DNA replication in bacteria. Cold Spring Harbor Symp. Quant. Biol., 28, 329-348.
2. Kornberg,A. and Baker,T.A. (1992) DNA Replication, 2nd Edn. W.H.Freeman and Co., New York.
3. Messer,W. and Weigel C. (1996) Initiation of chromosome replication. In Neidhardt,F.C (ed.), Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edn. ASM Press, Washington, DC, Vol. II, pp. 1579-1601.
4. Wahle,E., Lasken,R.S. and Kornberg,A. (1989) The dnaB-dnaC replication protein complex of Escherichia coli. II. Role of the complex in mobilizing dnaB functions. J. Biol. Chem., 264, 2469-2475.
5. Marszalek,J. and Kaguni,J.M. (1994) DnaA protein directs the binding of DnaB protein in initiation of DNA replication in Escherichia coli. J. Biol. Chem., 269, 4883-4890.
6. Learn,B.A., Um,S.J., Huang,L. and McMacken,R. (1997) Cryptic single-stranded DNA binding activities of the phage Lambda P and Escherichia coli DnaC replication initiation proteins facilitate the transfer of E. coli DnaB helicase onto DNA. Proc. Natl Acad. Sci. USA, 94, 1154-1159.
7. Baker,T.A. and Bell,S.P. (1998) Polymerases and the replisome: machines within machines. Cell, 92, 295-305.
8. Chang,P. and Marians,K.J. (2000) Identification of a region of Escherichia coli DnaB required for functional interaction with DnaG at the replication fork. J. Biol. Chem., 275, 26187-26195.
9. Kim,S., Dallmann,H.G., McHenrik,C.S. and Marians,K.J. (1996) Coupling of replicative polymerase and helicase: a τ-DnaB interaction mediates rapid replication fork movement. Cell, 84, 643-650.
10. Zechner,E.L., Wu,C.A. and Marians,K.J. (1992) Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. II. Frequency of primer synthesis and efficiency of primer utilization control Okazaki fragment size. J. Biol. Chem., 267, 4045-4053.
11. Kong,X.P., Onrust,R., O'Donnell,M. and Kuriyan,J. (1992) Three-dimensional structure of the subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell, 69, 425-437.
12. Dallmann,H.G. and McHenry,C.S. (1995). DnaX complex of Escherichia coli DNA polymerase III holoenzyme. J. Biol. Chem., 270, 29563-29569.
13. O'Donnell,M., Jeruzalmi,D. and Kuriyan,J. (2001) Clamp loader structure predicts the architecture of DNA polymerase III holoenzyme and RFC. Curr. Biol., 11, 935-946.
14. Kim,D.R. and McHenry,C.S. (1996) In vivo assembly of overproduced DNA polymerase III. Overproduction, purification and characterization of the alpha, alpha-epsilon and alpha-epsilon-theta subunits. J. Biol. Chem., 271, 20681-2089.
15. Jeruzalmi,D., O'Donnell,M. and Kuriyan,J. (2001) Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III. Cell, 106, 429-441.
16. Glover,B.P. and McHenry,C.S. (2001) The DNA polymerase III holoenzyme: an asymmetric dimeric replicative complex with leading and lagging strand polymerises. Cell, 105, 925-934.
17. Gao,D. and McHenry,C.S. (2001) τ Binds and organizes Escherichia coli replication proteins through distinct domains. Partial proteolysis of terminally tagged τ to determine candidate domains and to assign domain V as the α binding domain. J. Biol. Chem., 276, 4433-4440.
18. Gao,D. and McHenry,C.S. (2001) τ Binds and organizes Escherichia coli replication proteins through distinct domains. Domain IV, located within the unique C terminus of τ, binds the replication fork helicase, DnaB. J. Biol. Chem., 276, 4441-4446.
19. Gao,D. and McHenry,C.S. (2001) τ Binds and organizes Escherichia coli replication proteins through distinct domains. Domain III, shared by γ and τ, binds δδ′ and χΨ. J. Biol. Chem., 276, 4447-4453.
20. Bruck,I. and O'Donnell,M. (2000) The DNA replication machine of a Gram-positive organism. J. Biol. Chem., 275, 28971-28983.
21. Alonso,J.C., Shirahige,K. and Ogasawara,N. (1990) Molecular cloning, genetic characterization and DNA sequence analysis of the recM region of Bacillus subtilis. Nucleic Acids Res., 18, 6771-6777.
22. Imai,Y., Ogasawara,N., Ishigo-oka,D., Kadoya,R., Daito,T. and Moriya,S. (2000) Subcellular localization of DNA-initiation proteins of Bacillus subtilis: evidence that chromosome replication begins at either edge of the nucleoids. Mol. Microbiol., 36, 1037-1048.
23. Noirot-Gros,M.-F., Dervyn,E., Wu,L.J., Mervelet,P., Errington,J., Ehrlich,S.D. and Noirot,P. (2002) An expanded view of bacterial DNA replication. Proc. Natl Acad. Sci. USA, 99, 8342-8347.
24. Dervyn,E., Suski,C., Daniel,R., Bruand,C., Chapuis,J., Errington,J., Jannière,L. and Ehrlich,S.D. (2001) Two essential DNA polymerases at the bacterial replication fork. Science, 294, 1716-1719.
25. Pedre,X., Weise,F., Chai,S., Luder,G. and Alonso,J.C. (1994) Analysis of cis and trans acting elements required for the initiation of DNA replication in the Bacillus subtilis bacteriophage SPP1. J. Mol. Biol., 236, 1324-1340.
26. Missich,R., Weise,F., Chai,S., Lurz,R., Pedre,X. and Alonso,J.C. (1997) The replisome organizer (G38P) of Bacillus subtilis bacteriophage SPP1 forms specialized nucleoprotein complexes with two discrete distant regions of the SPP1 genome. J. Mol. Biol., 270, 50-64.
27. Ayora,S., Stasiak,A. and Alonso,J.C. (1999) The Bacillus subtilis bacteriophage SPP1 G39P delivers and activates the G40P DNA helicase upon interacting with the G38P-bound replication origin. J. Mol. Biol., 288, 71-85.
28. Ayora,S., Langer,U. and Alonso,J.C. (1998) Bacillus subtilis DnaG primase stabilises the bacteriophage SPP1 G40P helicase-ssDNA complex. FEBS Lett., 439, 59-62.
29. Studier,F.W. (1991). Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J. Mol. Biol., 219, 37-44.
30. Struck,J.C.R., Alonso,J.C., Toschka,H.Y. and Erdmann,V.A. (1990) The Bacillus subtilis small cytoplasmic RNA gene and dnaX map near the chromosomal replication region. Mol. Gen. Genet., 222, 470-472.
31. Haima,P., Bron,S. and Venema,G. (1987) The effect of restriction on shotgun cloning and plasmid stability in Bacillus subtilis. Mol. Gen. Genet., 209, 335-342.
32. Ayora,S., Weise,F.,Mesa,P., Stasiak,A. and Alonso,J.C. (2002) Bacillus subtilis bacteriophage SPP1 hexameric DNA helicase, G40P, interacts with forked DNA Nucleic Acids Res., 30, 2280-2289.
33. Rojo,F. and Alonso,J.C. (1994) A novel site-specific recombinase encoded by the Streptococcus pyogenes plasmid pSM19035. J. Mol. Biol., 238, 159-172.
34. Lemon,K.P. and Grossman,A.D. (1998) Localization of bacterial DNA polymerase: evidence for a factory model of replication. Science, 282, 1516-1519.
35. Dallmann,H.G. and McHenry,C.S. (1995) DnaX complex of Escherichia coli DNA polymerase III holoenzyme. Physical characterization of the DnaX subunits and complexes. J. Biol. Chem., 270, 29563-29569.
36. Glover,B.P., Pritchard,A.E. and McHenry,C.S. (2001) τ binds and organizes Escherichia coli replication proteins through distinct domains: domain III, shared by γ and τ, oligomerizes DnaX. J. Biol. Chem., 276, 35842-35846.
37. Dallmann,H.G., Kim,S., Pritchard,A.E., Marians,K.J. and McHenry,C.S. (2000) Characterization of the unique C terminus of the Escherichia coli τ DnaX protein. Monomeric C-τ binds α and DnaB and can partially replace τ in reconstituted replication forks. J. Biol. Chem., 275, 15512-15519.
38. Bárcena,M., Martin,C.S., Weise,F., Ayora,S., Alonso,J.C. and Carazo,J.M. (1998) Polymorphic quaternary organization of the Bacillus subtilis bacteriophage SPP1 replicative helicase (G40P). J. Mol. Biol., 283, 809-819.
39. Jezewska,M.J., Rajendran,S. and Bujalowski,W. (1998) Functional and structural heterogeneity of the DNA binding of the E. coli primary replicative helicase DnaB protein. J. Biol. Chem., 273, 9058-9069.
40. Lee,S.H. and Walker,J.R. (1987) Escherichia coli DnaX product, the τ subunit of DNA polymerase III, is a multifunctional protein with single-stranded DNA-dependant ATPase activity. Proc. Natl Acad. Sci. USA, 84, 2713-2717.