메뉴 건너뛰기




Volumn 88, Issue 6, 2005, Pages 3855-3869

Coupling field theory with continuum mechanics: A simulation of domain formation in giant unilamellar vesicles

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CAHN HILLIARD MODEL; COMPOSITION FREE ENERGY; COUPLING FIELD THEORY; DOMAIN FORMATION; ELASTIC DEFORMATION MECHANICS; ENERGY; GIANT UNILAMELLAR VESICLE; LANDAU FIELD THEORY MODEL; LANDAU GINZBURG MODEL; MECHANICS; MEMBRANE STRUCTURE; MEMBRANE VESICLE; MODEL; MORPHOGENESIS; PHASE COEXISTENCE; PHYSICAL PHASE; SIMULATION; SMOOTH PARTICLE APPLIED MECHANICS; THEORY;

EID: 22244446431     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.105.059436     Document Type: Article
Times cited : (77)

References (57)
  • 1
    • 0036200766 scopus 로고    scopus 로고
    • Calculating the bulk modulus for a lipid bilayer with nonequilibrium molecular dynamics simulation
    • Ayton, G., A. M. Smondyrev, S. Bardenhagen, P. McMurtry, and G. A. Voth. 2002a. Calculating the bulk modulus for a lipid bilayer with nonequilibrium molecular dynamics simulation. Biophys. J. 82:1226-1238.
    • (2002) Biophys. J. , vol.82 , pp. 1226-1238
    • Ayton, G.1    Smondyrev, A.M.2    Bardenhagen, S.3    McMurtry, P.4    Voth, G.A.5
  • 2
    • 0035997053 scopus 로고    scopus 로고
    • Interfacing molecular dynamics and macro-scale simulations for lipid bilayer vesicles
    • Ayton, G., A. M. Smondyrev, S. Bardenhagen, P. McMurtry, and G. A. Voth. 2002b. Interfacing molecular dynamics and macro-scale simulations for lipid bilayer vesicles. Biophys. J. 83:1026-1038.
    • (2002) Biophys. J. , vol.83 , pp. 1026-1038
    • Ayton, G.1    Smondyrev, A.M.2    Bardenhagen, S.3    McMurtry, P.4    Voth, G.A.5
  • 3
    • 0036928383 scopus 로고    scopus 로고
    • Bridging microscopic and mesoscopic simulations of lipid bilayers
    • Ayton, G., and G. A. Voth. 2002. Bridging microscopic and mesoscopic simulations of lipid bilayers. Biophys. J. 83:3357-3370.
    • (2002) Biophys. J. , vol.83 , pp. 3357-3370
    • Ayton, G.1    Voth, G.A.2
  • 4
    • 16344393515 scopus 로고    scopus 로고
    • Simulation of biomolecular systems at multiple length and timescales
    • Ayton, G. S., and G. A. Voth. 2004. Simulation of biomolecular systems at multiple length and timescales. Intl. J. Mult. Comput. Eng. 2:291-311.
    • (2004) Intl. J. Mult. Comput. Eng. , vol.2 , pp. 291-311
    • Ayton, G.S.1    Voth, G.A.2
  • 5
    • 0034081731 scopus 로고    scopus 로고
    • Two photon fluorescence microscopy of coexisting lipid domains in giant unilamellar vesicles of binary phospholipid mixtures
    • Bagatolli, L. A., and E. Gratton. 2000. Two photon fluorescence microscopy of coexisting lipid domains in giant unilamellar vesicles of binary phospholipid mixtures. Biophys. J. 78:290-305.
    • (2000) Biophys. J. , vol.78 , pp. 290-305
    • Bagatolli, L.A.1    Gratton, E.2
  • 6
    • 0242331729 scopus 로고    scopus 로고
    • Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension
    • Baumgart, T., S. T. Hess, and W. W. Webb. 2004. Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension. Nature. 425:821-824.
    • (2004) Nature , vol.425 , pp. 821-824
    • Baumgart, T.1    Hess, S.T.2    Webb, W.W.3
  • 7
    • 0037051054 scopus 로고    scopus 로고
    • A simplified approach to enhance the performance of smooth particle hydrodynamics methods
    • Bonet, J., and S. Kulasegaram. 2002. A simplified approach to enhance the performance of smooth particle hydrodynamics methods. Appl. Math. Comput. 126:133-155.
    • (2002) Appl. Math. Comput. , vol.126 , pp. 133-155
    • Bonet, J.1    Kulasegaram, S.2
  • 8
    • 1842471009 scopus 로고    scopus 로고
    • Variational formulation for the smooth particle hydrodynamics (SPH) simulation of fluid and solid problems
    • Bonet, J., S. Kulasegaram, M. X. Rodriguez-Paz, and M. Profit. 2004. Variational formulation for the smooth particle hydrodynamics (SPH) simulation of fluid and solid problems. Comput. Methods Appl. Mech. Eng. 193:1245-1256.
    • (2004) Comput. Methods Appl. Mech. Eng. , vol.193 , pp. 1245-1256
    • Bonet, J.1    Kulasegaram, S.2    Rodriguez-Paz, M.X.3    Profit, M.4
  • 9
    • 0842333144 scopus 로고    scopus 로고
    • Solvent free simulations of fluid membrane bilayers
    • Brannigan, G., and F. L. H. Brown. 2004. Solvent free simulations of fluid membrane bilayers. J. Chem. Phys. 120:1059-1071.
    • (2004) J. Chem. Phys. , vol.120 , pp. 1059-1071
    • Brannigan, G.1    Brown, F.L.H.2
  • 10
    • 0037305931 scopus 로고    scopus 로고
    • Regulation of protein mobility via thermal membrane undulations
    • Brown, F. L. H. 2003. Regulation of protein mobility via thermal membrane undulations. Biophys. J. 84:842-853.
    • (2003) Biophys. J. , vol.84 , pp. 842-853
    • Brown, F.L.H.1
  • 11
    • 33746012315 scopus 로고
    • Free energy of a nonuniform system. I. Interfacial free energy
    • Cahn, J., and J. E. Hilliard. 1958. Free energy of a nonuniform system. I. Interfacial free energy. J. Chem. Phys. 28:258-267.
    • (1958) J. Chem. Phys. , vol.28 , pp. 258-267
    • Cahn, J.1    Hilliard, J.E.2
  • 13
    • 0037426217 scopus 로고    scopus 로고
    • The bending rigidity of an amphiphilic bilayer from equilibrium and nonequilibrium molecular dynamics
    • den Otter, W. K., and W. J. Briels. 2003. The bending rigidity of an amphiphilic bilayer from equilibrium and nonequilibrium molecular dynamics. J. Chem. Phys. 118:4712-4720.
    • (2003) J. Chem. Phys. , vol.118 , pp. 4712-4720
    • Den Otter, W.K.1    Briels, W.J.2
  • 14
    • 0037130433 scopus 로고    scopus 로고
    • Viscoelastic flow studies by smoothed particle dynamics
    • Ellero, M., M. Kröger, and S. Hess. 2002. Viscoelastic flow studies by smoothed particle dynamics. J. Non-Newtonian Fluid Mech. 105:35-51.
    • (2002) J. Non-Newtonian Fluid Mech. , vol.105 , pp. 35-51
    • Ellero, M.1    Kröger, M.2    Hess, S.3
  • 15
    • 36549093652 scopus 로고
    • The Nose-Hoover thermostat
    • Evans, D. J., and B. L. Holian. 1985. The Nose-Hoover thermostat. J. Chem. Phys. 83:4069-4074.
    • (1985) J. Chem. Phys. , vol.83 , pp. 4069-4074
    • Evans, D.J.1    Holian, B.L.2
  • 17
    • 33845281853 scopus 로고
    • Physical properties of surfactant bilayer membranes: Thermal transitions, elasticity, rigidity, cohesion and colloidal interactions
    • Evans, E., and D. Needham. 1987. Physical properties of surfactant bilayer membranes: thermal transitions, elasticity, rigidity, cohesion and colloidal interactions. J. Phys. Chem. 91:4219-4228.
    • (1987) J. Phys. Chem. , vol.91 , pp. 4219-4228
    • Evans, E.1    Needham, D.2
  • 18
    • 0001576450 scopus 로고    scopus 로고
    • Elasticity of "fuzzy" biomembranes
    • Evans, E., and W. Rawicz. 1997. Elasticity of "fuzzy" biomembranes. Phys. Rev. Lett. 79:2379-2382.
    • (1997) Phys. Rev. Lett. , vol.79 , pp. 2379-2382
    • Evans, E.1    Rawicz, W.2
  • 19
    • 0035016931 scopus 로고    scopus 로고
    • Ternary phase diagram of dipalmitoyl-PC/dilauroyl-PC/cholesterol: Nanoscopic domain formation driven by cholesterol
    • Feigenson, G. W., and J. T. Buboltz. 2001. Ternary phase diagram of dipalmitoyl-PC/dilauroyl-PC/cholesterol: nanoscopic domain formation driven by cholesterol. Biophys. J. 80:2775-2788.
    • (2001) Biophys. J. , vol.80 , pp. 2775-2788
    • Feigenson, G.W.1    Buboltz, J.T.2
  • 20
    • 0027526308 scopus 로고
    • Mechanical properties of vesicles. II. A model for osmotic swelling and lysis
    • Hallet, F. R., J. Marsh, B. G. Nickel, and J. M. Wood. 1993. Mechanical properties of vesicles. II. A model for osmotic swelling and lysis. Biophys. J. 64:435-442.
    • (1993) Biophys. J. , vol.64 , pp. 435-442
    • Hallet, F.R.1    Marsh, J.2    Nickel, B.G.3    Wood, J.M.4
  • 21
    • 0001538909 scopus 로고
    • Canonical dynamics: Equilibrium phase-space distributions
    • Hoover, W. G. 1985. Canonical dynamics: equilibrium phase-space distributions. Phys. Rev. A. 31:1695-1697.
    • (1985) Phys. Rev. A , vol.31 , pp. 1695-1697
    • Hoover, W.G.1
  • 22
    • 1542287269 scopus 로고    scopus 로고
    • Links between microscopic and macroscopic fluid mechanics
    • Hoover, W. G., and C. G. Hoover. 2003. Links between microscopic and macroscopic fluid mechanics. Mol. Phys. 101:1559-1573.
    • (2003) Mol. Phys. , vol.101 , pp. 1559-1573
    • Hoover, W.G.1    Hoover, C.G.2
  • 23
    • 0030286703 scopus 로고    scopus 로고
    • Numerical heat conductivity in smooth particle applied mechanics
    • Hoover, W. G., and H. A. Posch. 1996. Numerical heat conductivity in smooth particle applied mechanics. Phys. Rev. E. 54:5142-5145.
    • (1996) Phys. Rev. E , vol.54 , pp. 5142-5145
    • Hoover, W.G.1    Posch, H.A.2
  • 24
    • 0002217438 scopus 로고    scopus 로고
    • Phase separation and shape deformation of two-phase membranes
    • Jiang, Y., T. Lookman, and A. Saxena. 2000. Phase separation and shape deformation of two-phase membranes. Phys. Rev. E. 61:R57-R61.
    • (2000) Phys. Rev. E , vol.61
    • Jiang, Y.1    Lookman, T.2    Saxena, A.3
  • 25
    • 0000692927 scopus 로고
    • Domain-induced budding of vesicles
    • Julicher, F., and R. Lipowsky. 1993. Domain-induced budding of vesicles. Phys. Rev. Lett. 70:2964-2967.
    • (1993) Phys. Rev. Lett. , vol.70 , pp. 2964-2967
    • Julicher, F.1    Lipowsky, R.2
  • 26
    • 0033587719 scopus 로고    scopus 로고
    • Characterization of lipid bilayer phases by confocal microscopy and fluorescence correlation spectroscopy
    • Korlach, J., P. Schwille, W. Webb, and G. W. Feigenson. 1999. Characterization of lipid bilayer phases by confocal microscopy and fluorescence correlation spectroscopy. Proc. Natl. Acad. Sci. USA. 96: 8461-8466.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8461-8466
    • Korlach, J.1    Schwille, P.2    Webb, W.3    Feigenson, G.W.4
  • 27
    • 0000911212 scopus 로고
    • Viscous conducting flows with smooth-particle applied mechanics
    • Kum, O., W. G. Hoover, and H. A. Posch. 1995. Viscous conducting flows with smooth-particle applied mechanics. Phys. Rev. E. 52:4899-4908.
    • (1995) Phys. Rev. E , vol.52 , pp. 4899-4908
    • Kum, O.1    Hoover, W.G.2    Posch, H.A.3
  • 28
    • 0001403502 scopus 로고    scopus 로고
    • Budding dynamics of multicomponent membranes
    • Kumar, P. B. S., G. Gompper, and R. Lipowsky. 2001. Budding dynamics of multicomponent membranes. Phys. Rev. Lett. 86:3911-3914.
    • (2001) Phys. Rev. Lett. , vol.86 , pp. 3911-3914
    • Kumar, P.B.S.1    Gompper, G.2    Lipowsky, R.3
  • 29
    • 4244115501 scopus 로고    scopus 로고
    • Shape instabilities in the domains of a two-component fluid membrane
    • Kumar, P. B. S., and M. Rao. 1998. Shape instabilities in the domains of a two-component fluid membrane. Phys. Rev. Lett. 80:2489-2492.
    • (1998) Phys. Rev. Lett. , vol.80 , pp. 2489-2492
    • Kumar, P.B.S.1    Rao, M.2
  • 30
    • 0001946235 scopus 로고
    • Theory of spinodal decomposition in alloys
    • Langer, J. 1971. Theory of spinodal decomposition in alloys. Ann. Phys. 65:53-86.
    • (1971) Ann. Phys. , vol.65 , pp. 53-86
    • Langer, J.1
  • 31
    • 19744364063 scopus 로고    scopus 로고
    • Dynamics of domain growth in self-assembled fluid vesicles
    • Laradji, M., and P. B. S. Kumar. 2004. Dynamics of domain growth in self-assembled fluid vesicles. Phys. Rev. Lett. 93:1981051-1981054.
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 1981051-1981054
    • Laradji, M.1    Kumar, P.B.S.2
  • 32
    • 1142298541 scopus 로고    scopus 로고
    • Dynamics of pinned membranes with application to protein diffusion on the surface
    • Lin, L. C.-L., and F. L. H. Brown. 2004. Dynamics of pinned membranes with application to protein diffusion on the surface. Biophys. J. 86:764-780.
    • (2004) Biophys. J. , vol.86 , pp. 764-780
    • Lin, L.C.-L.1    Brown, F.L.H.2
  • 33
    • 0033932839 scopus 로고    scopus 로고
    • Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations
    • Lindahl, E., and O. Edholm. 2000. Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations. Biophys. J. 79:426-433.
    • (2000) Biophys. J. , vol.79 , pp. 426-433
    • Lindahl, E.1    Edholm, O.2
  • 35
    • 0001765873 scopus 로고
    • A numerical approach to the testing of the fission hypothesis
    • Lucy, L. B. 1977. A numerical approach to the testing of the fission hypothesis. Astrophys. J. 82:1013-1024.
    • (1977) Astrophys. J. , vol.82 , pp. 1013-1024
    • Lucy, L.B.1
  • 36
    • 1642485164 scopus 로고    scopus 로고
    • Coarse-grained model for semiquantitative lipid simulations
    • Marrink, S. J., A. H. de Vries, and A. E. Mark. 2004. Coarse-grained model for semiquantitative lipid simulations. J. Phys. Chem. B. 108:750-760.
    • (2004) J. Phys. Chem. B , vol.108 , pp. 750-760
    • Marrink, S.J.1    De Vries, A.H.2    Mark, A.E.3
  • 37
    • 0035812110 scopus 로고    scopus 로고
    • Effect of undulations on surface tension in simulated bilayers
    • Marrink, S. J., and A. E. Mark. 2001. Effect of undulations on surface tension in simulated bilayers. J. Phys. Chem. B. 105:6122-6127.
    • (2001) J. Phys. Chem. B , vol.105 , pp. 6122-6127
    • Marrink, S.J.1    Mark, A.E.2
  • 39
    • 16344388803 scopus 로고    scopus 로고
    • Coupling field theory with mesoscopic dynamical simulations of multi-component lipid bilayers
    • McWhirter, J. L., G. S. Ayton, and G. A. Voth. 2004. Coupling field theory with mesoscopic dynamical simulations of multi-component lipid bilayers. Biophys. J. 87:3242-3263.
    • (2004) Biophys. J. , vol.87 , pp. 3242-3263
    • McWhirter, J.L.1    Ayton, G.S.2    Voth, G.A.3
  • 40
    • 0001007791 scopus 로고
    • A derivation and comparison of two equations (Landau-Ginzburg and Cahn) for the kinetics of phase transitions
    • Metiu, H., K. Kitahara, and J. Ross. 1976. A derivation and comparison of two equations (Landau-Ginzburg and Cahn) for the kinetics of phase transitions. J. Chem. Phys. 65:393-396.
    • (1976) J. Chem. Phys. , vol.65 , pp. 393-396
    • Metiu, H.1    Kitahara, K.2    Ross, J.3
  • 42
    • 0025150146 scopus 로고
    • Elastic deformation and failure of lipid bilayer membranes containing cholesterol
    • Needham, D., and R. S. Nunn. 1990. Elastic deformation and failure of lipid bilayer membranes containing cholesterol. Biophys. J. 58:997-1009.
    • (1990) Biophys. J. , vol.58 , pp. 997-1009
    • Needham, D.1    Nunn, R.S.2
  • 43
    • 0033918516 scopus 로고    scopus 로고
    • Water permeability and mechanical strength of polyunsaturated lipid bilayers
    • Olbrich, K., W. Rawicz, D. Needham, and E. Evans. 2000. Water permeability and mechanical strength of polyunsaturated lipid bilayers. Biophys. J. 79:321-327.
    • (2000) Biophys. J. , vol.79 , pp. 321-327
    • Olbrich, K.1    Rawicz, W.2    Needham, D.3    Evans, E.4
  • 44
    • 0034611005 scopus 로고    scopus 로고
    • Sphingolipid-cholesterol rafts diffuse as small entities in the plasma membrane of mammalian cells
    • Pralle, A., P. Keller, E. Florin, K. Simons, and J. K. H. Horber. 2000. Sphingolipid-cholesterol rafts diffuse as small entities in the plasma membrane of mammalian cells. J. Cell Biol. 148:997-1008.
    • (2000) J. Cell Biol. , vol.148 , pp. 997-1008
    • Pralle, A.1    Keller, P.2    Florin, E.3    Simons, K.4    Horber, J.K.H.5
  • 45
    • 0033732176 scopus 로고    scopus 로고
    • Condensed complexes, rafts, and the chemical activity of cholesterol in membranes
    • Radhakrishnan, A., T. G. Anderson, and H. M. McConnell. 2000. Condensed complexes, rafts, and the chemical activity of cholesterol in membranes. Proc. Natl. Acad. Sci. USA. 97:12422-12427.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 12422-12427
    • Radhakrishnan, A.1    Anderson, T.G.2    McConnell, H.M.3
  • 46
    • 0033932837 scopus 로고    scopus 로고
    • Effect of chain length and unsaturation on elasticity of lipid bilayers
    • Rawicz, W., K. C. Olbrich, T. McIntosh, D. Needham, and E. Evans. 2000. Effect of chain length and unsaturation on elasticity of lipid bilayers. Biophys. J. 79:328-339.
    • (2000) Biophys. J. , vol.79 , pp. 328-339
    • Rawicz, W.1    Olbrich, K.C.2    McIntosh, T.3    Needham, D.4    Evans, E.5
  • 47
    • 0001259264 scopus 로고    scopus 로고
    • Coarse-grained molecular dynamics and the atomic limit of finite elements
    • Rudd, R. E., and J. Q. Broughton. 1998. Coarse-grained molecular dynamics and the atomic limit of finite elements. Phys. Rev. B. 58: R5893-R5896.
    • (1998) Phys. Rev. B , vol.58
    • Rudd, R.E.1    Broughton, J.Q.2
  • 48
    • 0028275812 scopus 로고
    • Membrane bending energy concept of vesicle- And cell-shapes and shape-transitions
    • Sackmann, E. 1994. Membrane bending energy concept of vesicle- and cell-shapes and shape-transitions. FEBS Lett. 346:3-16.
    • (1994) FEBS Lett. , vol.346 , pp. 3-16
    • Sackmann, E.1
  • 49
    • 2542436287 scopus 로고
    • Curvature-induced lateral phase segregation in two-component vesicles
    • Seifert, U. 1993. Curvature-induced lateral phase segregation in two-component vesicles. Phys. Rev. Lett. 70:1335-1338.
    • (1993) Phys. Rev. Lett. , vol.70 , pp. 1335-1338
    • Seifert, U.1
  • 51
    • 0030949124 scopus 로고    scopus 로고
    • Functional rafts in cell membranes
    • Simons, K., and E. Ikonen. 1997. Functional rafts in cell membranes. Nature. 387:569-572.
    • (1997) Nature , vol.387 , pp. 569-572
    • Simons, K.1    Ikonen, E.2
  • 52
    • 7244255733 scopus 로고    scopus 로고
    • Shape deformation and phase separation dynamics of two-component vesicles
    • Taniguchi, T. 1996. Shape deformation and phase separation dynamics of two-component vesicles. Phys. Rev. Lett. 76:4444-4447.
    • (1996) Phys. Rev. Lett. , vol.76 , pp. 4444-4447
    • Taniguchi, T.1
  • 53
    • 4243308858 scopus 로고    scopus 로고
    • Weakly nonlocal irreversible thermodynamics-the Ginzburg-Landau equation
    • Van, P. 2002. Weakly nonlocal irreversible thermodynamics-the Ginzburg-Landau equation. Tech. Mech. 22:104-110.
    • (2002) Tech. Mech. , vol.22 , pp. 104-110
    • Van, P.1
  • 54
    • 12244270658 scopus 로고    scopus 로고
    • Organization in lipid membranes containing cholesterol
    • Veatch, S. L., and S. L. Keller. 2002. Organization in lipid membranes containing cholesterol. Phys. Rev. Lett. 89:2681011-2681014.
    • (2002) Phys. Rev. Lett. , vol.89 , pp. 2681011-2681014
    • Veatch, S.L.1    Keller, S.L.2
  • 55
    • 0242385346 scopus 로고    scopus 로고
    • Separation of liquid phases in giant vesicles of ternary mixtures of phospholipids and cholesterol
    • Veatch, S. L., and S. L. Keller. 2003. Separation of liquid phases in giant vesicles of ternary mixtures of phospholipids and cholesterol. Biophys. J. 85:3074-3083.
    • (2003) Biophys. J. , vol.85 , pp. 3074-3083
    • Veatch, S.L.1    Keller, S.L.2
  • 56
    • 2142651634 scopus 로고    scopus 로고
    • Liquid domains in vesicles investigated by NMR and fluorescence microscopy
    • Veatch, S. L., I. V. Polozov, K. Gawrisch, and S. L. Keller. 2004. Liquid domains in vesicles investigated by NMR and fluorescence microscopy. Biophys. J. 86:2910-2922.
    • (2004) Biophys. J. , vol.86 , pp. 2910-2922
    • Veatch, S.L.1    Polozov, I.V.2    Gawrisch, K.3    Keller, S.L.4
  • 57
    • 0033116366 scopus 로고    scopus 로고
    • The material point method for simulation of thin membranes
    • York, A. R., D. Sulsky, and H. L. Schreyer. 1999. The material point method for simulation of thin membranes. Intl. J. Numer. Methods Eng. 44:1429-1456.
    • (1999) Intl. J. Numer. Methods Eng. , vol.44 , pp. 1429-1456
    • York, A.R.1    Sulsky, D.2    Schreyer, H.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.