Biofilms as a mode of existence of bacteria in external environment and host body: The phenomenon, genetic control, and regulation systems of development

Genetika

Volumn 40, Issue 11, 2004, Pages 1445-1456

  Iiyina, T S ^a   Romanova, Yu M ^a   Gintsburg, A L ^a  

^a RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL FLORA; BACTERIAL GENE; BACTERIAL SURVIVAL; BACTERIOPLANKTON; BIOFILM; CELL ASSAY; ECOSYSTEM; ENVIRONMENTAL FACTOR; GENE CONTROL; GENE EXPRESSION; GENETIC ORGANIZATION; GENETIC REGULATION; GENETIC VARIABILITY; INFECTION; MICROORGANISM; NONHUMAN; REVIEW; BACTERIUM; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY;

BACTERIA (MICROORGANISMS);

BACTERIA; BIOFILMS; ENVIRONMENTAL MICROBIOLOGY; GENE EXPRESSION REGULATION, BACTERIAL;

EID: 21644454570     PISSN: 00166758     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (67)

1. Donlan R.M., Costerton J.W. Biofilms: survival mechanisms of clinically relevant microorganisms // Clin. Microbiol. Rev. 2002. V. 15. P. 167-193.
2. Costerton J.W., Geesy G.G., Cheng K.-J. Bacterial biofilms in nature and disease // Annu. Rev. Microbiol. 1987. V. 41. P. 435-464.
3. Costerton J.W., Lewandowski Z., Caldwell D.E. et al. Microbial biofilms // Annu. Rev. Microbiol. Ibid. 1995. V. 49. P. 711-745.
4. Donlan R.M. Biofilms: microbial life on surfaces // Emerg. Infect. Diseases. 2002. V. 8. P. 881-890.
5. O'Toole G.A., Kaplan H., Kolter R. Biofilm formation as microbial development // Annu. Rev. Microbiol. 2000. V. 54. P. 49-79.
6. Shapiro JA. Bacteria as multicellular organism // Sci. Amer. 1988. V. 256. P. 82-89.
7. Shapiro J.A. Thinking about bacterial population as multicellular organisms // Annu. Rev. Microbiol. 1998. V. 52. P. 81-104.
8. Costerton J.W., Geesy G.G., Cheng K.-J. How bacteria stick // Sci. Amer. 1978. V. 238. P. 86-95.
9. Stoodley P., Sauer K., Davies D.G., Costerton J.W. Biofilms as complex differentiated communities // Annu. Rev. Microbiol. 2002. V. 56. P. 187-209.
10. Davey M.E., Caiaiza N.C., O'Toole GA. Rhamnolipid surfactant production affects biofilm architecture in Pseudomonas aeruginosa // J. Bacteriol. 2003. V. 185. P. 1027-1036.
11. Fletcher M., Pringle J.H. Influence of substratum hydration and absorbed macromolecules on bacterial attachment to surfaces // Appl. Environ. Microbiol. 1986. V. 51. P. 1321-1325.
12. Poulsen L.K., Ballard G., Stahl D.A. Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms // Appl. Environ. Microbiol. 1993. V. 59. P. 1354-1360.
13. Stanley P.M. Factors affecting the irreversible attachment of Pseudomonas aeruginosa to stainless steel // Can. J. Microbiol. 1983 .V. 29. P. 1493-1499.
14. O'Toole G.A., Gibbs K.A., Hager P.W. et al. The global carbon metabolism regulator Crc is a component of a signal transduction pathway required for biofilm development by Pseudomonas aeruginosa // J. Bacteriol. 2000. V. 182. P. 425-431.
15. O'Toole G.A., Kolter R. The initiation of biofilm formation in Pseudomonas fluorescens WCS365 preceeds via multiple, convergent signaling pathway: a genetic analysis // Mol. Microbiol. 1998. V. 28. P. 449-461.
16. Pratt L.A., Kolter R. Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili // Mol. Microbiol. 1998. V. 30. P. 285-294.
17. Davey M.E., O'Toole G.A. Microbial biofilms: from ecology to molecular genetics // Microbiol. Mol. Biol. Reviews. 2000. V. 64. P. 847-867.
18. O'Toole G.A., Kolter R. Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development // Mol. Microbiol. 1998. V. 30. P. 295-304.
19. Harrington D.A., Hall R.H., Losonsky G. et al. Toxin, toxin-corregulated pilus and the toxR regulon are essential for Vibrio cholerae pathogenesis in humans // J. Exptl Med. 1988. V. 168. P. 1487-1492.
20. Thelin K.H., Taylor R.K. Toxin-corregulated pilus, but not mannose-sensitive hemagglutinin, is required for colonization by Vibrio cholerae El Tor biotype and 0139 strains // Infect. Immunol. 1996. V. 64. P. 2853-2856.
21. Finelli A., Gallant C.V., Jarvi K., Burrows L.L. Use of in-biofilm expresson technology to identify genes involved in Pseudomonas aeruginosa biofilm development // J. Bacteriol. 2003. V. 185. P. 2700-2710.
22. Slauch U.M., Mahan M.J., Mecalanos J.J. In vivo expression technology for selection of bacterial genes specifically induced in host tissues // Methods Enzymol. 1994. V. 235. P. 481-492.
23. Sauer K., Camper A.K., Ehrlich G.D. et al. Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm // J. Bacteriol. 2002. V. 184. P. 1140-1154.
24. Whiteley M., Bangora M.G., Bumgarner R.E. et al. Gene expression in Pseudomonas aeruginosa biofilms // Nature. 2001. V. 413. P. 860-864.
25. Yoshida A., Kuramitsu H.K. Multiple Streptococcus mutants genes are involved in biofilm formation // Appl. Environ. Microbiol. 2002. V. 68. P. 6283-6291.
26. Oosthuizen M.C., Steyn B., Theron J. et al. Proteomic analysis reveals differential protein expression by Bacillus cereus during biofilm formation // Appl. Environ. Microbiol. 2002. V. 68. P. 2770-2780.
27. Bomchil N., Watnick P., Kolter R. Identification and characterization of a Vibrio cholerae gene, mba, involved in maintenance of biofilm architecture // J. Bacteriol. 2003. V. 185. No. 4. P. 1384-1390.
28. Watnick P.I., Kolter R. Steps in the development of a Vibrio cholerae El Tor biofilm // Mol. Microbiol. 1999. V. 34. P. 586-595.
29. Marsh J.W., Taylor R.K. Genetic and transcriptional analysis of the V. cholerae mannose-sensitive hemagglutinin type 4 pilus gene locus // J. Bacteriol. 1999. V. 181. P. 1110-1117.
30. Reidl J., Klose K. Vibrio cholerae and cholera: out of water and into the host // FEMS Microbiol. Rev. 2002. V. 26. P. 125-139.
31. O'Toole G.A. To build a biofilm // J. Bacteriol. 2003. V. 185. P. 2687-2689.
32. Davies D.G., Parsek M.R., Pearson J.P. et al. The involvement of cell-to-cell signals in the development of a bacterial biofilm // Science. 1998. V. 280. P. 295-298.
33. Singh P.K., Schaefer A.L., Parsek M.R. et al. Quorum sensing signals indicate that cystic fibrosis lungs are infected with bacterial biofilms // Nature. 2000. V. 407. P. 762-764.
34. Li Y.-H., Tang H., Aspiras M.B. et al. A quorum sensing signaling system essential for genetic competence in Streptococcus mutants is involved in biofilm formation // J. Bacteriol. 2002. V. 184. P. 2699-2708.
35. Rumbaugh K.P., Griswold J.A., Iglewski B.H., Hamood A.N. Contribution of quorum sensing to the virulence of Pseudomonas aeruginosa in burn wound infection // Infect. Immunol. 1999. V. 67. P. 5854-5862.
36. Pringent-Combaret C., Vidal O., Dorel C., Lejeune P. Abiotic surface sensing and biofilm-dependent regulation of gene expression in Escherichia coli // J. Bacteriol. 1999. V. 181. P. 5993-6002.
37. Otto K., Norbeck J., Larsson T. et al. Adhesion of type I-fimbriated Escherichia coli to abiotic surfaces leads to altered composition of outer membrane proteins // J. Bacteriol. 2001. V. 183. P. 2445-2453.
38. Stanley N.R., Britton R.A., Grossman A.D., Lazazzera B.A. Identification of catabolite repression as a physiological regulator of biofilm formation by Bacillus subtilis by use of DNA microarrays // J. Bacteriol. 2003. V. 185. P. 1951-1957.
39. Hamon M.A., Lazazzera B. The sporulation transcription factor SpoOA is required for biofilm development in Bacillus subtilis // Mol. Microbiol. 2001. V. 42. P. 1199-1209.
40. Branda S.S., Gonzalez-Pastor J.E., Ben-Yehuda S. et al. Fruiting body formation by Bacillus subtilis // Proc. Natl Acad. Sci. USA. 2001. V. 98. P. 11621-11626.
41. Tang H.B., DiMango E., Bryan R. et al. Contribution of specific Pseudomonas aeruginosa virulence factors to pathogenesis of pneumonia in a neonatal mouse model of infection // Infect. Immunol. 1996. V. 64. P. 37-43.
42. Rumbaugh K.P., Griswold J.A., Hamood A.N. Contribution of the regulatory gene lasR to the pathogenesis of Pseudomonas aeruginosa infection of burned mice // J. Burn. Care Rehabil. 1999. V. 20. P. 42-49.
43. Parkins M.D., Ceri H., Storey D.G. Pseudomonas aeruginosa GacA, a factor in multihost virulence, is also essential for biofilm formation // Mol. Microbiol. 2001. V. 40. P. 1215-1226.
44. Rachid M.H., Kornberg A. Inorganic polyphosphate is needed for swimming, swarming and twitching motilities of Pseudomonas aeruginosa // Proc. Natl Acad. Sci. USA. 2000. V. 97. P. 4885-4890.
45. Prigent-Combaret C., Brombacher E., Vidal O. et al. Complex regulatory network controls initial adhesion and biofilm formation in Escherichia coli via regulation of the csdD gene // J. Bacteriol. 2001. V. 183. P. 7213-7223.
46. Tobes R., Ramos JL. AraC-XylS database: a family of positive transcriptional regulator in bacteria // Nucl. Acid Res. 2002. V. 30. P. 318-321.
47. Dorel C., Vidal O., Pringent-Combaret C. et al. Involvement of the Cpx signal transduction pathway of E. coli in biofilm formation // FEMS Microbiol. Lett. 1999. V. 178. P. 169-175.
48. Otto K., Silhavy T.J. Surface sensing and adhesion of Escherichia coli controlled by the Cpx -signalling pathway // Proc. Natl Acad. Sci. USA. 2002. V. 99. P. 2287-2292.
49. Haugo A.J., Watnick P.J. Vibrio cholerae CytR is a repressor of biofilm development // Mol. Microbiol. 2002. V. 45. P. 471-483.
50. Wang S.-Y., Lauritz J., Jass J., Milton D.J. A toxR homolog from Vibrio angullarum serotype O1 regulates its own production, bile resistance and biofilm formation // J. Bacteriol. 2002. V. 184. P. 1630-1639.
51. Conlon K.M., Humphreys H., O'Gara J.P. icaR encodes a transcriptional repressor involved in environmental regulation of ica operon expression and biofilm formation by Staphylococcus epidermis // J. Bacteriol. 2002. V. 184. P. 4400-4408.
52. Loo C.Y., Mitrakul K., Voss I.B. et al. Involvement of the adc operon and manganese homeostasis in Streptococcus gordonii biofilm formation // J. Bacteriol. 2003. V. 185. P. 2887-2900.
53. Wen Z.T., Burne R.A. Functional genomics approach to identifying genes required for biofilm development by Streptococcus mutants // Appl. Environ. Microbiol. 2002. V. 68. P. 1196-1203.
54. Dunny G.M., Leonard B.A. Cell-cell communication in gram-positive bacteria // Annu. Rev. Microbiol. 1997. V. 51. P. 527-564.
55. Costerton J.W., Stewart P.S., Greenberg E.P. Bacterial biofilms: a common case of persistant infections // Science. 1999. V. 284. P. 318-322.
56. Busscher H.J., Bruinsma G., Weissenbruch R.V. et al. The effect of buttermilk consumption on biofilm formation on silicone rubber voice prostheses in an artificial throat // Eur. Arch. Otolaryngol. 1998. V. 255. P. 410-413.
57. Gristina A.G., Dobbins J.J., Giammara B. et al. Biomaterial-centered sepsis and the total artificial heart // J. Amer. Microbiol. Assoc. 1988. V. 259. P. 870-874.
58. Govang J.R.B., Deteric V. Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia // Microbiol. Rev. 1996. V. 60. P. 539-574.
59. Duan K., Dammel C., Stein J. et al. Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication // Mol. Microbiol. 2003. V. 50. P. 1477-1491.
60. Henrishi A.T. Studies of freshwater bacteria. I. A direct microscopic technique // J. Bacteriol. 1933. V. 25. P. 277-287.
61. Zobell C.E. The effect of solid surfaces upon bacterial activity // J. Bacteriol. 1943. V. 46. P. 39-56.
62. Givskow M., deNys R.R., Manefield M. et al. Eucariotic interference with homoserine lactone-mediated procariotic signaling // J. Bacteriol. 1996. V. 178. P. 6618-6622.
63. Manefield M., deNys R., Kumar N. et al. Evidence that halogenated furanones from Deliceapulchra inhibit acylated homoserine lactone (AHL)-mediated gene expression by displacing the AHL signal from its receptor protein // Microbiology. 1999. V. 145. P. 283-291.
64. Telford G., Wheeler D., Williams P. et al. The Pseudomonas aeruginosa quorum sensing signal molecule N-(3-Oxododecanoil)-1-homoserine lactone has immunomodulatory activity // Infect. Immunol. 1998. V. 66. P. 32-36.