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Volumn 22, Issue 1, 2004, Pages 43-54

Design, synthesis, and computational affinity prediction of ester soft drugs as inhibitors of dihydrofolate reductase from Pneumocystis carinii

Author keywords

Dihydrofolate reductase; Molecular dynamics; Pneumocystis carinii; Soft drug

Indexed keywords

DIHYDROFOLATE REDUCTASE INHIBITOR; ESTER DERIVATIVE; FUNGAL ENZYME;

EID: 2142647173     PISSN: 09280987     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejps.2004.02.004     Document Type: Article
Times cited : (22)

References (58)
  • 2
    • 0023222307 scopus 로고
    • Activity of antifolates against Pneumocystis carinii dihydrofolate reductase and identification of a potent new agent
    • Allegra C.J., Kovacs J.A., Drake J.C., Swan J.C., Chabner B.A., Masur H. Activity of antifolates against Pneumocystis carinii dihydrofolate reductase and identification of a potent new agent. J. Exp. Med. 165:1987b;926-931
    • (1987) J. Exp. Med. , vol.165 , pp. 926-931
    • Allegra, C.J.1    Kovacs, J.A.2    Drake, J.C.3    Swan, J.C.4    Chabner, B.A.5    Masur, H.6
  • 3
    • 0028261664 scopus 로고
    • News. FDA approves trimetrexate as a second line therapy for Pneumocystis carinii pneumonia
    • Anonymous, 1994. News. FDA approves trimetrexate as a second line therapy for Pneumocystis carinii pneumonia. Am. J. Hosp. Pharm. 51, 591-592.
    • (1994) Am. J. Hosp. Pharm. , vol.51 , pp. 591-592
  • 4
    • 10844247631 scopus 로고    scopus 로고
    • The linear interaction energy method for predicting ligand binding free energies
    • Reddy, M.R., Erion, M.D. (Eds.), Kluwer Academic Publishers, Dordrecht.
    • Åqvist, J., Marelius, J., 2001 The linear interaction energy method for predicting ligand binding free energies. In: Reddy, M.R., Erion, M.D. (Eds.), Free Energy Calculations in Rational Drug Design. Kluwer Academic Publishers, Dordrecht.
    • (2001) Free Energy Calculations in Rational Drug Design
    • Åqvist, J.1    Marelius, J.2
  • 5
    • 0028155689 scopus 로고
    • A new method for predicting binding affinity in computer-aided drug design
    • Åqvist J., Medina C., Samuelsson J.E. A new method for predicting binding affinity in computer-aided drug design. Protein Eng. 7:1994;385-391
    • (1994) Protein Eng. , vol.7 , pp. 385-391
    • Åqvist, J.1    Medina, C.2    Samuelsson, J.E.3
  • 7
    • 0018747748 scopus 로고
    • 2,4-Diamino-5-methyl-6-[(2,4,5-trimethoxyanilino)methyl]quinazoline (TMQ), a potent non-classical folate antagonist inhibitor-I
    • Bertino J.R., Sawacki W.L., Moroson B.A., Cashmore A.R., Elslager E.F. 2, 4-Diamino-5-methyl-6-[(2, 4, 5-trimethoxyanilino)methyl]quinazoline (TMQ), a potent non-classical folate antagonist inhibitor-I. Biochem. Pharmacol. 28:1979;1983-1987
    • (1979) Biochem. Pharmacol. , vol.28 , pp. 1983-1987
    • Bertino, J.R.1    Sawacki, W.L.2    Moroson, B.A.3    Cashmore, A.R.4    Elslager, E.F.5
  • 8
    • 0021740106 scopus 로고
    • Structure-activity relationships of dihydrofolate reductase inhibitors
    • Blaney J.M., Hansch C., Silipo C., Vittoria A. Structure-activity relationships of dihydrofolate reductase inhibitors. Chem. Rev. 84:1984;333-407
    • (1984) Chem. Rev. , vol.84 , pp. 333-407
    • Blaney, J.M.1    Hansch, C.2    Silipo, C.3    Vittoria, A.4
  • 9
    • 0033966357 scopus 로고    scopus 로고
    • Soft drug design: General principles and recent applications
    • Bodor N., Buchwald P. Soft drug design: general principles and recent applications. Med. Res. Rev. 20:2000;58-101
    • (2000) Med. Res. Rev. , vol.20 , pp. 58-101
    • Bodor, N.1    Buchwald, P.2
  • 10
    • 0025836272 scopus 로고
    • Pneumocystis carinii dihydrofolate reductase used to screen potential antipneumocystis drugs
    • Broughton M.C., Queener S.F. Pneumocystis carinii dihydrofolate reductase used to screen potential antipneumocystis drugs. Antimicrob. Agents Chemother. 35:1991;1348-1355
    • (1991) Antimicrob. Agents Chemother. , vol.35 , pp. 1348-1355
    • Broughton, M.C.1    Queener, S.F.2
  • 12
    • 0027177889 scopus 로고
    • Identification of highly potent and selective inhibitors of Toxoplasma gondii dihydrofolate reductase
    • Chio L.-C., Queener S.F. Identification of highly potent and selective inhibitors of Toxoplasma gondii dihydrofolate reductase. Antimicrob. Agents Chemother. 37:1993;1914-1923
    • (1993) Antimicrob. Agents Chemother. , vol.37 , pp. 1914-1923
    • Chio, L.-C.1    Queener, S.F.2
  • 13
    • 0021702476 scopus 로고
    • Budesonide: A preliminary review of its pharmacodynamic properties and therapeutic efficacy in asthma and rhinitis
    • Clissold S.P., Heel R.C. Budesonide: a preliminary review of its pharmacodynamic properties and therapeutic efficacy in asthma and rhinitis. Drugs. 28:1984;485-518
    • (1984) Drugs , vol.28 , pp. 485-518
    • Clissold, S.P.1    Heel, R.C.2
  • 14
    • 0031798641 scopus 로고    scopus 로고
    • Comparison of ternary crystal complexes of F31 variants of human dihydrofolate reductase with NADPH and a classical antitumor furopyrimidine
    • Cody V., Galitsky N., Luft J.R., Pangborn W., Blakley R.L., Gangjee A. Comparison of ternary crystal complexes of F31 variants of human dihydrofolate reductase with NADPH and a classical antitumor furopyrimidine. Anticancer Drug Des. 13:1998;307-315
    • (1998) Anticancer Drug Des. , vol.13 , pp. 307-315
    • Cody, V.1    Galitsky, N.2    Luft, J.R.3    Pangborn, W.4    Blakley, R.L.5    Gangjee, A.6
  • 16
    • 0020452143 scopus 로고
    • Biochemical and chemotherapeutic studies on 2,4-diamino-6-(2,5- dimethoxybenzyl)-5-methylpyrido[2,3-d]pyrimidine (BW301U), a novel lipid-soluble inhibitor of dihydrofolate reductase
    • Duch D.S., Edelstein M.P., Bowers S.W., Nichol C.A. Biochemical and chemotherapeutic studies on 2, 4-diamino-6-(2, 5-dimethoxybenzyl)-5- methylpyrido[2, 3-d]pyrimidine (BW301U), A novel lipid-soluble inhibitor of dihydrofolate reductase. Cancer Res. 42:1982;3987-3994
    • (1982) Cancer Res. , vol.42 , pp. 3987-3994
    • Duch, D.S.1    Edelstein, M.P.2    Bowers, S.W.3    Nichol, C.A.4
  • 17
    • 23544460889 scopus 로고
    • Synthesis of fused pyrimidines as folate antagonists
    • Castle, R.N., Townsend, L.B. (Eds.), Hetero Corp., Orem, UT.
    • Elslager, E.F., Davoll, J., 1974. Synthesis of fused pyrimidines as folate antagonists. In: Castle, R.N., Townsend, L.B. (Eds.), Lectures in Heterocyclic Chemistry. Hetero Corp., Orem, UT.
    • (1974) Lectures in Heterocyclic Chemistry
    • Elslager, E.F.1    Davoll, J.2
  • 18
    • 0021049802 scopus 로고
    • Folate antagonists. 20. Synthesis, antitumor, and antimalarial properties of trimetrexate and related 6-[(phenylamino)methyl]-2,4-quinazolindiamines
    • Elslager E.F., Johnson J.L., Werbel L.M. Folate antagonists. 20. synthesis, antitumor, and antimalarial properties of trimetrexate and related 6-[(phenylamino)methyl]-2, 4-quinazolindiamines. J. Med. Chem. 26:1983;1753-1760
    • (1983) J. Med. Chem. , vol.26 , pp. 1753-1760
    • Elslager, E.F.1    Johnson, J.L.2    Werbel, L.M.3
  • 20
    • 0000655526 scopus 로고
    • Safety and efficiency of sulfamethoxazole and trimethoprim chemoprophylaxis for Pneumocystis carinii pneumonia in AIDS
    • Fischl M.A., Dickinson G.M., La Voie L. Safety and efficiency of sulfamethoxazole and trimethoprim chemoprophylaxis for Pneumocystis carinii pneumonia in AIDS. J. Am. Med. Assoc. 105:1988;45-48
    • (1988) J. Am. Med. Assoc. , vol.105 , pp. 45-48
    • Fischl, M.A.1    Dickinson, G.M.2    La Voie, L.3
  • 21
    • 0025103349 scopus 로고
    • Pneumocystis carinii pneumonia in human immunodeficiency virus-infected patients
    • Glatt A.E., Chirgwin K. Pneumocystis carinii pneumonia in human immunodeficiency virus-infected patients. Arch. Intern. Med. 150:1990;271-279
    • (1990) Arch. Intern. Med. , vol.150 , pp. 271-279
    • Glatt, A.E.1    Chirgwin, K.2
  • 23
    • 0021259408 scopus 로고
    • Adverse reactions to trimethoprim-sulfamethoxazole in patients with the acquired immunodeficiency syndrome
    • Gordin F.M., Simon G.L., Wofsy C.B., Mills J. Adverse reactions to trimethoprim-sulfamethoxazole in patients with the acquired immunodeficiency syndrome. Ann. Intern. Med. 100:1984;495-499
    • (1984) Ann. Intern. Med. , vol.100 , pp. 495-499
    • Gordin, F.M.1    Simon, G.L.2    Wofsy, C.B.3    Mills, J.4
  • 24
    • 0035913056 scopus 로고    scopus 로고
    • Design, synthesis, computational prediction and biological evaluation of ester soft drugs as inhibitors of dihydrofolate reductase from Pneumocystis carinii
    • Graffner-Nordberg M., Kolmodin K., Åqvist J., Queener S.F., Hallberg A. Design, synthesis, computational prediction and biological evaluation of ester soft drugs as inhibitors of dihydrofolate reductase from Pneumocystis carinii. J. Med. Chem. 44:2001;2391-2402
    • (2001) J. Med. Chem. , vol.44 , pp. 2391-2402
    • Graffner-Nordberg, M.1    Kolmodin, K.2    Åqvist, J.3    Queener, S.F.4    Hallberg, A.5
  • 26
    • 0018874182 scopus 로고
    • Synthesis and antitumor activity of 2,4-diamino-6-(2,5-dimethoxybenzyl)- 5-methylpyrido[2,3-d]pyrimidine
    • Grivsky E.M., Lee S., Sigel C.W., Duch D.S., Nichol C.A. Synthesis and antitumor activity of 2, 4-diamino-6-(2, 5-dimethoxybenzyl)-5-methylpyrido[2, 3-d]pyrimidine. J. Med. Chem. 23:1980;327-329
    • (1980) J. Med. Chem. , vol.23 , pp. 327-329
    • Grivsky, E.M.1    Lee, S.2    Sigel, C.W.3    Duch, D.S.4    Nichol, C.A.5
  • 27
    • 0034618541 scopus 로고    scopus 로고
    • Privileged molecules for protein binding identified from NMR-based screening
    • Hajduk P.J., Bures M., Praestgaard J., Fesik S.W. Privileged molecules for protein binding identified from NMR-based screening. J. Med. Chem. 43:2000;3443-3447
    • (2000) J. Med. Chem. , vol.43 , pp. 3443-3447
    • Hajduk, P.J.1    Bures, M.2    Praestgaard, J.3    Fesik, S.W.4
  • 28
    • 0025762346 scopus 로고
    • A controlled study of inhaled pentamidine for primary prevention of Pneumocystis carinii pneumonia
    • Hirschel B., Lazzarin A., Chopard P. A controlled study of inhaled pentamidine for primary prevention of Pneumocystis carinii pneumonia. N. Engl. J. Med. 324:1991;1079-1083
    • (1991) N. Engl. J. Med. , vol.324 , pp. 1079-1083
    • Hirschel, B.1    Lazzarin, A.2    Chopard, P.3
  • 30
    • 0033803407 scopus 로고    scopus 로고
    • Epidemiology of human immunodeficiency virus-associated opportunistic infections in the united states in the era of highly active antiretroviral therapy
    • Kaplan J.E., Hanson D., Dworkin M.S., Frederick T., Bertolli J., Lindegren M.L., Holmberg S., Jones J.L. Epidemiology of human immunodeficiency virus-associated opportunistic infections in the united states in the era of highly active antiretroviral therapy. Clin. Infect. Dis. 30(Suppl. 1):2000;S5-S14
    • (2000) Clin. Infect. Dis. , vol.30 , Issue.SUPPL. 1
    • Kaplan, J.E.1    Hanson, D.2    Dworkin, M.S.3    Frederick, T.4    Bertolli, J.5    Lindegren, M.L.6    Holmberg, S.7    Jones, J.L.8
  • 33
    • 0000115003 scopus 로고
    • A local reaction field method for fast evaluation of long-range electrostatic interactions in molecular simulations
    • Lee F.S., Warshel A. A local reaction field method for fast evaluation of long-range electrostatic interactions in molecular simulations. J. Chem. Phys. 97:1992;3100-3107
    • (1992) J. Chem. Phys. , vol.97 , pp. 3100-3107
    • Lee, F.S.1    Warshel, A.2
  • 35
    • 0028920025 scopus 로고
    • Methotrexate-resistant variants of human dihydrofolate reductase with substitutions of leucine 22: Kinetics, crystallography, and potential as selectable markers
    • Lewis W.S., Cody V., Galitsky N., Luft J.R., Pangborn W., Chunduru S.K., Spencer H.T., Appleman J.R., Blakley R.L. Methotrexate-resistant variants of human dihydrofolate reductase with substitutions of leucine 22: kinetics, crystallography, and potential as selectable markers. J. Biol. Chem. 270:1995;5057-5064
    • (1995) J. Biol. Chem. , vol.270 , pp. 5057-5064
    • Lewis, W.S.1    Cody, V.2    Galitsky, N.3    Luft, J.R.4    Pangborn, W.5    Chunduru, S.K.6    Spencer, H.T.7    Appleman, J.R.8    Blakley, R.L.9
  • 37
    • 0032014129 scopus 로고    scopus 로고
    • Computation of affinity and selectivity: Binding of 2,4-diaminopteridine and 2,4-diaminoquinazoline inhibitors to dihydrofolate reductases
    • Marelius J., Graffner-Nordberg M., Hansson T., Hallberg A., Åqvist J. Computation of affinity and selectivity: binding of 2, 4-diaminopteridine and 2, 4-diaminoquinazoline inhibitors to dihydrofolate reductases. J. Comput. Aided Mol. Des. 12:1998a;119-131
    • (1998) J. Comput. Aided Mol. Des. , vol.12 , pp. 119-131
    • Marelius, J.1    Graffner-Nordberg, M.2    Hansson, T.3    Hallberg, A.4    Åqvist, J.5
  • 38
    • 0002496235 scopus 로고    scopus 로고
    • Calculation of ligand binding free energies from molecular dynamics simulations
    • Marelius J., Hansson T., Åqvist J. Calculation of ligand binding free energies from molecular dynamics simulations. Int. J. Quant. Chem. 69:1998c;77-88
    • (1998) Int. J. Quant. Chem. , vol.69 , pp. 77-88
    • Marelius, J.1    Hansson, T.2    Åqvist, J.3
  • 39
    • 0032232405 scopus 로고    scopus 로고
    • Q: An MD program for free energy calculations and empirical valence bond simulations in biomolecular systems
    • Marelius J., Kolmodin K., Feierberg I., Åqvist J. Q: an MD program for free energy calculations and empirical valence bond simulations in biomolecular systems. J. Mol. Graph. Model. 16:1998b;213-225
    • (1998) J. Mol. Graph. Model. , vol.16 , pp. 213-225
    • Marelius, J.1    Kolmodin, K.2    Feierberg, I.3    Åqvist, J.4
  • 40
    • 0027126413 scopus 로고
    • Prevention and treatment of Pneumocystis pneumonia
    • Masur H. Prevention and treatment of Pneumocystis pneumonia. N. Engl. J. Med. 327:1992;1853-1860
    • (1992) N. Engl. J. Med. , vol.327 , pp. 1853-1860
    • Masur, H.1
  • 42
    • 0025946562 scopus 로고
    • The causes of death in patients with human immunodeficiency virus infections: A clinical and pathological study with emphasis on the role of pulmonary diseases
    • McKenzie R., Travis W.D., Dolan S.A. The causes of death in patients with human immunodeficiency virus infections: a clinical and pathological study with emphasis on the role of pulmonary diseases. Medicine (Baltimore). 70:1991;326-343
    • (1991) Medicine (Baltimore) , vol.70 , pp. 326-343
    • McKenzie, R.1    Travis, W.D.2    Dolan, S.A.3
  • 43
    • 0028921374 scopus 로고
    • Detection of long-lived bound water molecules in complex of human dihydrofolate reductase with methotrexate and NADPH
    • Meiering E.M., Wagner G. Detection of long-lived bound water molecules in complex of human dihydrofolate reductase with methotrexate and NADPH. J. Mol. Biol. 247:1995;294-308
    • (1995) J. Mol. Biol. , vol.247 , pp. 294-308
    • Meiering, E.M.1    Wagner, G.2
  • 44
    • 0029243110 scopus 로고
    • AIDS and the lung. Update 1995: 1 Pneumocystis carinii pneumonia
    • Miller R.F., Mitchell D.M. AIDS and the lung. Update 1995: 1 Pneumocystis carinii pneumonia. Thorax. 50:1995;191-200
    • (1995) Thorax , vol.50 , pp. 191-200
    • Miller, R.F.1    Mitchell, D.M.2
  • 45
    • 0022815208 scopus 로고
    • Pneumocystis carinii and Toxoplasma gondii infections in patients with AIDS
    • Mills J. Pneumocystis carinii and Toxoplasma gondii infections in patients with AIDS. Rev. Infect. Dis. 8:1986;1001-1011
    • (1986) Rev. Infect. Dis. , vol.8 , pp. 1001-1011
    • Mills, J.1
  • 46
    • 0025312871 scopus 로고
    • Inhaled pentamidine. An overview of its pharmacological properties and a review of its therapeutic use in pneumocystis carinii pneumonia
    • Monk J.P., Benfield P. Inhaled pentamidine. An overview of its pharmacological properties and a review of its therapeutic use in pneumocystis carinii pneumonia. Drugs. 39:1990;741-756
    • (1990) Drugs , vol.39 , pp. 741-756
    • Monk, J.P.1    Benfield, P.2
  • 48
    • 0022398182 scopus 로고
    • Pentamidine for the treatment of Pneumocystis carinii pneumonia and other protozoal diseases
    • Pearson R.D., Hewlett E.L. Pentamidine for the treatment of Pneumocystis carinii pneumonia and other protozoal diseases. Ann. Intern. Med. 103:1985;782-786
    • (1985) Ann. Intern. Med. , vol.103 , pp. 782-786
    • Pearson, R.D.1    Hewlett, E.L.2
  • 49
    • 0029450636 scopus 로고
    • Hydration in drug design. 3. Conserved water molecules at the ligand-binding sites of homologous proteins
    • Poornima C.S., Dean P.M. Hydration in drug design. 3. Conserved water molecules at the ligand-binding sites of homologous proteins. J. Comput. Aided Mol. Des. 9:1995;521-531
    • (1995) J. Comput. Aided Mol. Des. , vol.9 , pp. 521-531
    • Poornima, C.S.1    Dean, P.M.2
  • 50
    • 0032743720 scopus 로고    scopus 로고
    • Structure-based design of selective inhibitors of dihydrofolate reductase: Synthesis and antiparasitic activity of 2,4-diaminopteridine analogues with a bridged diarylamine side chain
    • Rosowsky A., Cody V., Galitsky N., Fu H., Papoulis A.T., Queener S.F. Structure-based design of selective inhibitors of dihydrofolate reductase: synthesis and antiparasitic activity of 2, 4-diaminopteridine analogues with a bridged diarylamine side chain. J. Med. Chem. 42:1999;4853-4860
    • (1999) J. Med. Chem. , vol.42 , pp. 4853-4860
    • Rosowsky, A.1    Cody, V.2    Galitsky, N.3    Fu, H.4    Papoulis, A.T.5    Queener, S.F.6
  • 51
    • 0023020079 scopus 로고
    • Design of dihydrofolate reductase inhibitors from X-ray crystal structures
    • Roth B. Design of dihydrofolate reductase inhibitors from X-ray crystal structures. Fed. Proc. 45:1986;2765-2772
    • (1986) Fed. Proc. , vol.45 , pp. 2765-2772
    • Roth, B.1
  • 52
    • 0028152428 scopus 로고
    • Adverse cutanous reactions to trimethoprim-sulfamethoxazole in patients with the acquired immunodeficiency syndrome and Pneumocystis carinii pneumonia
    • Roudier C., Caumes E., Rogeauz O., Bricaire F., Gentilini M. Adverse cutanous reactions to trimethoprim-sulfamethoxazole in patients with the acquired immunodeficiency syndrome and Pneumocystis carinii pneumonia. Arch. Dermatol. 30:1994;1383-1386
    • (1994) Arch. Dermatol. , vol.30 , pp. 1383-1386
    • Roudier, C.1    Caumes, E.2    Rogeauz, O.3    Bricaire, F.4    Gentilini, M.5
  • 53
    • 0025103250 scopus 로고
    • Trimetrexate-leucoverin dosage evaluation study for the treatment of Pneumocystis carinii pneumonia
    • Sattler F.R., Allegra C.J., Verdegem T.D. Trimetrexate-leucoverin dosage evaluation study for the treatment of Pneumocystis carinii pneumonia. J. Infect. Dis. 161:1990;91-96
    • (1990) J. Infect. Dis. , vol.161 , pp. 91-96
    • Sattler, F.R.1    Allegra, C.J.2    Verdegem, T.D.3
  • 56
    • 0002284367 scopus 로고
    • Current regimens of therapy and prophylaxis
    • Walzer, P.D. (Ed.), Marcel Dekker, New York
    • Walker, R.E., Masur H., 1994. Current regimens of therapy and prophylaxis. In: Walzer, P.D. (Ed.), Pneumocystis carinii Pneumonia. Marcel Dekker, New York, pp. 439-466.
    • (1994) Pneumocystis Carinii Pneumonia , pp. 439-466
    • Walker, R.E.1    Masur, H.2
  • 57
    • 0034864126 scopus 로고    scopus 로고
    • Isolation of rat dihydrofolate reductase gene and characterization of recombinant enzyme
    • Wang Y., Bruenn J.A., Queener S.F., Cody V. Isolation of rat dihydrofolate reductase gene and characterization of recombinant enzyme. Antimicrob. Agents Chemother. 45:2001;2517-2523
    • (2001) Antimicrob. Agents Chemother. , vol.45 , pp. 2517-2523
    • Wang, Y.1    Bruenn, J.A.2    Queener, S.F.3    Cody, V.4
  • 58
    • 0020035148 scopus 로고
    • Pharmacology and toxicity of a potent "nonclassical" 2,4-diamino quinazoline folate antagonist, trimetrexate, in normal dogs
    • Weir E.C., Cashmore A.R., Dreyer R.N., Graham M.L., Hsiao N., Moroson B.A., Sawacki W.L., Bertino J.R. Pharmacology and toxicity of a potent "nonclassical" 2, 4-diamino quinazoline folate antagonist, trimetrexate, in normal dogs. Cancer Res. 42:1982;1696-1702
    • (1982) Cancer Res. , vol.42 , pp. 1696-1702
    • Weir, E.C.1    Cashmore, A.R.2    Dreyer, R.N.3    Graham, M.L.4    Hsiao, N.5    Moroson, B.A.6    Sawacki, W.L.7    Bertino, J.R.8


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