메뉴 건너뛰기




Volumn 32, Issue 7, 2005, Pages 1267-1279

Historical biogeography and phylogeny of monachine seals (Pinnipedia: Phocidae) based on mitochondrial and nuclear DNA data

Author keywords

Historical biogeography; Mixed model; Molecular divergence estimates; Monachinae; Nonparametric rate smoothing; Partitioned Bayesian inference; Phylogeny; Pinnipedia; Seal biogeography

Indexed keywords

BIOGEOGRAPHY; MITOCHONDRIAL DNA; PHYLOGENY; PINNIPED;

EID: 21244454070     PISSN: 03050270     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2005.01281.x     Document Type: Article
Times cited : (56)

References (59)
  • 1
    • 0037376791 scopus 로고    scopus 로고
    • New information on the natural history, distribution, and skull size of the extinct (?) West Indian monk seal, Monachus tropicalis
    • Adam, P.J. & Garcia, G.G. (2003) New information on the natural history, distribution, and skull size of the extinct (?) West Indian monk seal, Monachus tropicalis. Marine Mammal Science, 19, 297-317.
    • (2003) Marine Mammal Science , vol.19 , pp. 297-317
    • Adam, P.J.1    Garcia, G.G.2
  • 2
    • 3142713403 scopus 로고    scopus 로고
    • RAC-SPA. United Nations Environment Program (UNEP), Aloès Editions, Túnez
    • Aguilar, A. (1999) Status of Mediterranean monk seal populations. RAC-SPA. United Nations Environment Program (UNEP), Aloès Editions, Túnez, 60 pp.
    • (1999) Status of Mediterranean Monk Seal Populations
    • Aguilar, A.1
  • 5
    • 13844250525 scopus 로고    scopus 로고
    • The evolutionary biology of pinnipeds
    • ed. by V. de Buffrenil and J.-M. Mazin, Verlag Dr Frederich Pfeil, München Germany
    • Berta, A. & Adam, P. (2001) The evolutionary biology of pinnipeds. Secondary adaptation of tetrapods to life in the water (ed. by V. de Buffrenil and J.-M. Mazin), pp. 235-260. Verlag Dr Frederich Pfeil, München Germany.
    • (2001) Secondary Adaptation of Tetrapods to Life in the Water , pp. 235-260
    • Berta, A.1    Adam, P.2
  • 7
    • 0001972497 scopus 로고    scopus 로고
    • A morphological perspective on the phylogenetic relationships of the extant phocid seals (Mammalia: Phocidae)
    • Bininda-Emonds, O.R.P. & Russell, A.P. (1996) A morphological perspective on the phylogenetic relationships of the extant phocid seals (Mammalia: Phocidae). Bonner Zoologische Monographien, 41, 1-256.
    • (1996) Bonner Zoologische Monographien , vol.41 , pp. 1-256
    • Bininda-Emonds, O.R.P.1    Russell, A.P.2
  • 8
    • 0032936412 scopus 로고    scopus 로고
    • Building large trees by combining phylogenetic information: A complete phytogeny of the extant Carnivora (Mammalia)
    • Bininda-Emonds, O.R.P., Gittleman, J.L. & Purvis, A. (1999) Building large trees by combining phylogenetic information: a complete phytogeny of the extant Carnivora (Mammalia). Biological Reviews, 74, 143-175.
    • (1999) Biological Reviews , vol.74 , pp. 143-175
    • Bininda-Emonds, O.R.P.1    Gittleman, J.L.2    Purvis, A.3
  • 9
    • 9944255059 scopus 로고    scopus 로고
    • Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards
    • in press
    • Brandley, M.B., Schmitz, A. & Reeder, T.W. (2005) Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Systematic Biology, in press.
    • (2005) Systematic Biology
    • Brandley, M.B.1    Schmitz, A.2    Reeder, T.W.3
  • 10
    • 0022534918 scopus 로고
    • Rates of DNA sequence evolution differ between taxonomic groups
    • Britten R.J. (1986) Rates of DNA sequence evolution differ between taxonomic groups. Science, 231, 1393-1398.
    • (1986) Science , vol.231 , pp. 1393-1398
    • Britten, R.J.1
  • 11
    • 0008370877 scopus 로고    scopus 로고
    • Intra- and Interfamilial systematic relationships of phocid seals as indicated by mitochondrial DNA sequences
    • Molecular genetics of marine mammals (ed. by A.E. Dizon, S.J. Chivers and W.E. Perrin), Allen Press, Kansas
    • Carr, S.M. & Perry, E.A. (1997) Intra- and Interfamilial systematic relationships of phocid seals as indicated by mitochondrial DNA sequences. Molecular genetics of marine mammals (ed. by A.E. Dizon, S.J. Chivers and W.E. Perrin), pp. 277-290. Society for Marine Mammalogy Special Publication No. 3, Allen Press, Kansas.
    • (1997) Society for Marine Mammalogy Special Publication No. 3 , pp. 277-290
    • Carr, S.M.1    Perry, E.A.2
  • 12
    • 0002141431 scopus 로고    scopus 로고
    • Antitropical distributions and speciation in dolphins of the genus Lagenorhynchus
    • Molecular genetics of marine mammals (ed. by A.E. Dizon, S.J. Chivers and W.E. Perrin), Allen Press, Kansas
    • Cipriano, F. (1997) Antitropical distributions and speciation in dolphins of the genus Lagenorhynchus. Molecular genetics of marine mammals (ed. by A.E. Dizon, S.J. Chivers and W.E. Perrin), pp. 305-316. Society for Marine Mammalogy Special Publication No. 3, Allen Press, Kansas.
    • (1997) Society for Marine Mammalogy Special Publication No. 3 , pp. 305-316
    • Cipriano, F.1
  • 13
    • 0000101362 scopus 로고
    • The antitropical factor in cetacean speciation
    • Davies, J.L. (1963) The antitropical factor in cetacean speciation. Evolution, 17, 107-116.
    • (1963) Evolution , vol.17 , pp. 107-116
    • Davies, J.L.1
  • 15
    • 21244478504 scopus 로고    scopus 로고
    • The Miocene pinniped Desmatophoca oregonensis Condon, 1906 (Mammalia: Carnivora) from the Astoria Formation, Oregon
    • Deméré, T.A. & Berta, A. (2002) The Miocene pinniped Desmatophoca oregonensis Condon, 1906 (Mammalia: Carnivora) from the Astoria Formation, Oregon. Smithsonian Contributions to Paleobiology, 93, 113-148.
    • (2002) Smithsonian Contributions to Paleobiology , vol.93 , pp. 113-148
    • Deméré, T.A.1    Berta, A.2
  • 17
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution, 17, 368-376.
    • (1981) Journal of Molecular Evolution , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 18
    • 0033520744 scopus 로고    scopus 로고
    • Status of the Mediterranean monk seal Monachus monachus in the western Sahara and the implications of a mass mortality event
    • Forcada, J., Hammond, P.S. & Aguilar, A. (1999) Status of the Mediterranean monk seal Monachus monachus in the western Sahara and the implications of a mass mortality event. Marine Ecology Progress Series, 188, 249-261.
    • (1999) Marine Ecology Progress Series , vol.188 , pp. 249-261
    • Forcada, J.1    Hammond, P.S.2    Aguilar, A.3
  • 20
    • 0027616543 scopus 로고
    • Alignment-ambiguous nucleotide sites and the exclusion of systematic data
    • Gatesy, J., DeSalle, R. & Wheeler, W. (1993) Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Molecular Phylogenetics and Evolution, 2, 152-157.
    • (1993) Molecular Phylogenetics and Evolution , vol.2 , pp. 152-157
    • Gatesy, J.1    DeSalle, R.2    Wheeler, W.3
  • 21
    • 84963009045 scopus 로고
    • Paratethyan seals
    • Grigorescu, D. (1976) Paratethyan seals. Systematic Zoology, 25, 407-419.
    • (1976) Systematic Zoology , vol.25 , pp. 407-419
    • Grigorescu, D.1
  • 22
    • 12044253190 scopus 로고
    • An empirical test of boot-strapping as a method for assessing confidence in phylogenetic analysis
    • Hillis, D.M. & Bull, JJ. (1993) An empirical test of boot-strapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology, 42, 182-192.
    • (1993) Systematic Biology , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 24
    • 11944268967 scopus 로고
    • Performance of phylogenetic methods in simulation
    • Huelsenbeck, J.P. (1995) Performance of phylogenetic methods in simulation. Systematic Biology, 44, 17-48.
    • (1995) Systematic Biology , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 25
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 27
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura, M. (1968) Evolutionary rate at the molecular level. Nature, 217, 624-626.
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 29
    • 0036005516 scopus 로고    scopus 로고
    • Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): A comparison of parsimony, likelihood, and Bayesian approaches
    • Leaché, A.D. & Reeder, T.W. (2002) Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Systematic Biology, 51, 44-68.
    • (2002) Systematic Biology , vol.51 , pp. 44-68
    • Leaché, A.D.1    Reeder, T.W.2
  • 30
    • 0030472358 scopus 로고    scopus 로고
    • Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene
    • Ledje, C. & Arnason, U. (1996) Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene. Journal of Molecular Evolution, 43, 641-649.
    • (1996) Journal of Molecular Evolution , vol.43 , pp. 641-649
    • Ledje, C.1    Arnason, U.2
  • 34
    • 0000072945 scopus 로고
    • Geology and paleontology of late Cenozoic marine deposits in the Sacaco area (Peru)
    • de Muizon, C. & De Vries, T.J. (1985) Geology and paleontology of late Cenozoic marine deposits in the Sacaco area (Peru). Sonderdruck aus Geologische Rundschau, 74, 547-563.
    • (1985) Sonderdruck Aus Geologische Rundschau , vol.74 , pp. 547-563
    • De Muizon, C.1    De Vries, T.J.2
  • 35
    • 0003078723 scopus 로고
    • Approximate Bayesian inference with the weighted likelihood bootstrap (with discussion)
    • Newton, M.A. & Raftery, A.E. (1994) Approximate Bayesian inference with the weighted likelihood bootstrap (with discussion). Journal of the Royal Statistical Society, 56, 3-48.
    • (1994) Journal of the Royal Statistical Society , vol.56 , pp. 3-48
    • Newton, M.A.1    Raftery, A.E.2
  • 36
    • 2942626695 scopus 로고    scopus 로고
    • Program distributed by the author. Department of Systematic Zoology, Uppsala University
    • Nylander, J.A.A. (2002) MrModeltest v1.0b. Program distributed by the author. Department of Systematic Zoology, Uppsala University (http://www.ebc.uu.se/systzoo/staff/nylander.html).
    • (2002) MrModeltest V1.0b
    • Nylander, J.A.A.1
  • 38
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D. & Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 39
    • 84963057118 scopus 로고
    • Geography of phocid evolution
    • Ray, C.E. (1976) Geography of phocid evolution. Systematic Zoology, 25, 391-406.
    • (1976) Systematic Zoology , vol.25 , pp. 391-406
    • Ray, C.E.1
  • 40
    • 0037767343 scopus 로고    scopus 로고
    • A phylogeny of the Australian Sphenomorphus group (Scincidae: Squamata) and the phylogenetic placement of the crocodile skinks (Tribolonotus): Bayesian approaches to assessing congruence and obtaining confidence in maximum likelihood inferred relationships
    • Reeder, T.W. (2003) A phylogeny of the Australian Sphenomorphus group (Scincidae: Squamata) and the phylogenetic placement of the crocodile skinks (Tribolonotus): Bayesian approaches to assessing congruence and obtaining confidence in maximum likelihood inferred relationships. Molecular Phylogenetics and Evolution, 27, 384-397.
    • (2003) Molecular Phylogenetics and Evolution , vol.27 , pp. 384-397
    • Reeder, T.W.1
  • 43
  • 45
    • 0030773749 scopus 로고    scopus 로고
    • A nonparametric approach to estimating divergence times in the absence of rate consistency
    • Sanderson, M.J. (1997) A nonparametric approach to estimating divergence times in the absence of rate consistency. Molecular Biology and Evolution, 14, 1218-1232.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 1218-1232
    • Sanderson, M.J.1
  • 46
    • 0038515024 scopus 로고    scopus 로고
    • Distributed by M.J. Sanderson. University of California Davis, Davis, CA
    • Sanderson, M.J. (2002) r8s, version 1.5 (beta), user's manual. Distributed by M.J. Sanderson. University of California Davis, Davis, CA.
    • (2002) R8s, Version 1.5 (Beta), User's Manual
    • Sanderson, M.J.1
  • 48
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • ed. by D.M. Hillis, C. Moritz and B.K. Mable, Sinauer Associates, Sunderland, MA
    • Swofford, D.L., Olsen, G.J., Waddell, P.J. & Hillis, D.M. (1996) Phylogenetic inference. Molecular systematics, 2nd edn (ed. by D.M. Hillis, C. Moritz and B.K. Mable), pp. 407-514. Sinauer Associates, Sunderland, MA.
    • (1996) Molecular Systematics, 2nd Edn , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 49
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
    • (1997) Nucleic Acids Research , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 50
    • 0031007526 scopus 로고    scopus 로고
    • Historical distribution of the extinct tropical seal, Monachus tropicalis (Carnivora: Phocidae)
    • Timm, R.M., Salazar, R.M. & Peterson, A.T. (1996) Historical distribution of the extinct tropical seal, Monachus tropicalis (Carnivora: Phocidae). Conservation Biology, 11, 549-551.
    • (1996) Conservation Biology , vol.11 , pp. 549-551
    • Timm, R.M.1    Salazar, R.M.2    Peterson, A.T.3
  • 51
    • 0036431235 scopus 로고    scopus 로고
    • Phylogenetic relationship of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
    • Wilcox, T.P., Zwickl, D.J., Heath, T. & Hillis, D.M. (2002) Phylogenetic relationship of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution, 25, 361-371.
    • (2002) Molecular Phylogenetics and Evolution , vol.25 , pp. 361-371
    • Wilcox, T.P.1    Zwickl, D.J.2    Heath, T.3    Hillis, D.M.4
  • 52
    • 0034350323 scopus 로고    scopus 로고
    • Phylogenetic relationships among the phrynosomatid sand lizards inferred from mitochondrial DNA sequences generated by heterogeneous evolutionary processes
    • Wilgenbusch, J. & de Queiroz, K. (2000) Phylogenetic relationships among the phrynosomatid sand lizards inferred from mitochondrial DNA sequences generated by heterogeneous evolutionary processes. Systematic Biology, 49, 592-612.
    • (2000) Systematic Biology , vol.49 , pp. 592-612
    • Wilgenbusch, J.1    De Queiroz, K.2
  • 54
    • 0002836311 scopus 로고
    • The walrus auditory region and monophyly of pinnipeds
    • Wyss, A.R. (1987) The walrus auditory region and monophyly of pinnipeds. American Museum Novitates, 2871, 1-31.
    • (1987) American Museum Novitates , vol.2871 , pp. 1-31
    • Wyss, A.R.1
  • 55
    • 0002836313 scopus 로고
    • On 'retrogression' in the evolution of the Phocinae and phylogenetic affinities of the monk seals
    • Wyss, A.R. (1988) On 'retrogression' in the evolution of the Phocinae and phylogenetic affinities of the monk seals. American Museum Novitates, 2954, 1-38.
    • (1988) American Museum Novitates , vol.2954 , pp. 1-38
    • Wyss, A.R.1
  • 56
    • 0002490378 scopus 로고
    • A phylogenetic analysis and definition of the Carnivora
    • ed. by F.S. Szalay, M.J. Novacek and M.C. McKenna Springer-Verlag, New York
    • Wyss, A.R. & Flynn, J. (1993) A phylogenetic analysis and definition of the Carnivora. Mammal phylogeny: placentals (ed. by F.S. Szalay, M.J. Novacek and M.C. McKenna), pp. 32-52. Springer-Verlag, New York.
    • (1993) Mammal Phylogeny: Placentals , pp. 32-52
    • Wyss, A.R.1    Flynn, J.2
  • 57
    • 0029878719 scopus 로고    scopus 로고
    • Phylogenetic analysis using parsimony and likelihood methods
    • Yang, Z. (1996a) Phylogenetic analysis using parsimony and likelihood methods. Journal of Molecular Evolution, 42, 294-307.
    • (1996) Journal of Molecular Evolution , vol.42 , pp. 294-307
    • Yang, Z.1
  • 58
    • 0029970097 scopus 로고    scopus 로고
    • Maximum-likelihood models for combined analyses of multiple sequence data
    • Yang, Z. (1996b) Maximum-likelihood models for combined analyses of multiple sequence data. Journal of Molecular Evolution, 42, 587-596.
    • (1996) Journal of Molecular Evolution , vol.42 , pp. 587-596
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.