Conserved motif CMLD in silicic acid transport proteins of diatoms

Molecular Biology

Volumn 39, Issue 2, 2005, Pages 269-280

  Sherbakova, T A ^a   Masyukova, Yu A ^a   Safonova, T A ^a   Petrova, D P ^a   Vereshagin, A L ^a   Minaeva, T V ^a   Adelshin, R V ^a   Triboy, T I ^a   Stonik, I V ^b   Aizdaitcher, N A ^b   Kozlov, M V ^a   Likhoshway, Ye V ^a   Grachev, M A ^a  

^a LIMNOLOGICAL INSTITUTE   (Russian Federation)

^b INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

Author keywords

Conserved amino acid motif; Diatoms; Genes; Silicic acid transport proteins

Indexed keywords

ARGININE; CARRIER PROTEIN; CYSTEINE; LYSINE; N IODOACETYLAMIDOETHYL 1 AMINONAPHTHALENE 5 SULFONIC ACID; PEPTIDE; SILICIC ACID TRANSPORT PROTEIN; SULFONIC ACID DERIVATIVE; UNCLASSIFIED DRUG; ZINC ION;

ALKYLATION; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CHAETOCEROS MUELLERI; CONTROLLED STUDY; DIATOM; GENE SEQUENCE; GENETIC CODE; GENETIC CONSERVATION; MEMBRANE CHANNEL; NONHUMAN; PHAEODACTYLUM TRICORNUTUM; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN TRANSPORT; SYNEDRA ACUS;

BACILLARIOPHYTA; CHAETOCEROS MUELLERI; CYLINDROTHECA FUSIFORMIS; PHAEODACTYLUM TRICORNUTUM; RAPHIDAE; SYNEDRA ACUS;

EID: 21044447213     PISSN: 00268933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11008-005-0038-4     Document Type: Article

References (48)

1. Nelson D.M., Treguer P., Brzezinski M.A., Leynaert A., Queguiner B. 1995. Production and dissolution of biogenic silica in the ocean: Revised global estimates, comparison with regional data and relationship to biogenic sedimentation. Global Biogeochem. Cycles. 9, 353-365.
2. Field C.B., Behrenfeld M.J., Randerson J.T., Falkowski P. 1998. Primary production of the biosphere: Integrating terrestrial and oceanic components. Science. 281, 237-240.
3. Kooistra W.H.C.F, Medlin L.K. 1996. Evolution of the Diatoms (Bacillariophyta): 4. Reconstruction of their age from ssu rRNA coding regions and the fossil records. Mol. Phyl. Evol. 6, 391-407.
4. Round F.E. 1996. What characters define diatom genera, species and intraspecific taxa. Diatom. Res. 11, 203-218.
5. Mann D.G. 1999. The species concept in diatoms. Phycologia. 38, 437-495.
6. Hildebrand M., Volcani B.E., Gassmann W., Schroeder J.I. 1997. A gene family of silicon transporters. Nature. 385, 688-689.
7. Hildebrand M., Dahlin K., Volcani B.E. 1998. Characterization of a silicon transporter gene family in Cylindrotheca fusiformis: Sequences, expression analysis, and identification of homologs in other diatoms. Mol. Gen. Genet. 260, 480-486.
8. Grachev M.A., Denikona N.N., Belikov S.I., Likhoshway E.V., Usoltseva M.V., Tikhonova I.V., Adelshin R.V., Kler S.A., Sherbakova T.A. 2002. Elements of the active center of silicic acid transport proteins in diatoms. Mol. Biol. 36, 679-681.
9. Voronkov M.G., Kuznetsov I.G. 1983. Udivitel'nyi element zhizni (A Wonderful Element of Life), Irkutsk: Vostochno-Sibirskoe Knizhnoe Izd.
10. Silicon and Siliceous Structures in Biological Systems. Eds. Simpson T.L., Volcani E.V. 1981. N.Y.: Springer.
11. Silicon Biomineralization. Biology, Biochemistry, Molecular Biology, Biotechnology. Ed. Muller W.E.G. 2003. Progress in Molecular and Subcellular Biology. vol. 33. Berlin: Springer.
12. Doyle J.J., Doyle J.L. 1990. Isolation of plant DNA from fresh tissue. Focus. 12, 13-15.
13. Hall T.A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98. Nucl. Acids Sym. Ser. 41, 95-98.
14. Kumar S., Tamura K., Jakobsen I.B., Nei M. 2001. MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics. 17, 1244-1245.
15. Guillard R.R.L., Ryther J.H. 1962. Studies of marine planktonic diatoms: 1. Cyclotella nana Hustedt and Detonula confervacea (Cleve) Gran. Can. J. Microbiol. 8, no. 2, 229-239.
16. Catalogue of Strains. Eds. Thompson A.S., Rhodes J.C., Pettman I. 1988. In: Culture Collections of Algae and Protozoa. Kendal: Titus Wilson & Son.
17. Scala S., Carels N., Falciatore A., Chiusano M.L., Bowler C. 2002. Genome properties of the diatom Phaeodactylum tricornutum. Plant Physiol. 129, 993-1002.
18. Sorhannus U., Fox M. 1999. Synonymous and nonsynonymous substitution rates in diatoms: A comparison between chloroplast and nuclear genes. J. Mol. Evol. 48, 209-212.
19. Medlin L.K., Kooistra W., Gresonde R., Wellbroc U. 1996. Evolution of the diatoms (Bacillariophyta): 2. Nuclear-encoded small subunit rRNA sequence comparisons confirm a paraphyletic origin for the centric diatoms. Mol. Biol. Evol. 13, 67-75.
20. Kooistra W.H.C.F., Medlin L.K. 1996. Evolution of the diatoms (Bacillariophyta): 4. A reconstruction of their age from small subunit rRNA coding regions and the fossil record. Mol. Phyl. Evol. 6, 391-407.
21. Li W.-H. 1997. Molecular Evolution. Saunderland, Mass.: Sinauer Assoc.
22. Rueter J., Chisholm S., Morel F. 1981. Effects of copper toxicity on silicic acid uptake and growth in Thalassiosira pseudonana. J. Phycol. 17, 270-278.
23. Claquin P., Martin-Jezequel V., Kromkamp J., Veldhuis M., Kraay G. 2002. Uncoupling of silicon compared to carbon and nitrogen metabolisms, and role of the cell cycle, in continuous cultures of Thalassiosira pseudonana. J. Phycol. 38, 922-930.
24. Hildebrand M. 2002. Lack of coupling between silicon and other elemental metabolisms in diatoms. J. Phycol. 38, 841-843.
25. Kröger N., Deutzmann R., Sumper M. 1999. Polycationic peptides from diatom biosilica that direct silica nanosphere formation. Science. 286, 1129-1132.
26. Hudson E.N., Weber G. 1973. Synthesis and characterization of two fluorescent sulfhydryl reagents. Biochemistry. 12, 4154-4161.
27. Martin-Jezequel V., Hildebrand M., Brzezinski M. 2000. Silicon metabolism in diatoms: Implication for growth. J. Phycol. 36, 821-840.
28. Marshall C.E. 1964. The physical chemistry and mineralogy of soils. In: Soil Materials. N.Y.: Wiley.
29. Krauskopf K.B. 1956. Dissolution and precipitation of silica at low temperatures. Geochim. Cosmochim. Acta. 46, 1-26.
30. Anderson M.A., F.M., Guillard R.R. 1978. Growth limitation of a coastal diatom by low zinc ion activity. Nature. 276, 70-71.
31. Rueter J.G, Jr., Morel F.M.M. 1981. The interaction between zinc deficiency and copper toxicity as it affects the silicic acid uptake mechanisms in Thalassiosira pseudonana. Limnol. Oceanogr. 26, 67-73.
32. Kiefer L.L., Fierke C.A. 1994. Functional characterization of human carbonic anhydrase II variants with altered zinc binding sites. Biochemistry. 33, 15 233-15 240.
33. Schröder H.C., Krasko A., Pennec G.L., Adell T., Wiens M., Hassanein H., Müller I., Müller W. 2003. Silicase, an enzyme which degrades biogenous amorphous silica: Contribution to the metabolism of silica deposition in the demosponge Suberites domuncula. In: Silicon Biomineralization. Biology, Biochemistry, Molecular Biology, Biotechnology. Ed. Muller W.E.G. (Progress in Molecular and Subcellular Biology, vol. 33). Berlin: Springer, pp. 249-268.
34. 1 complex. Biochim. Biophys. Acta. 1459, 440-448.
35. Sullivan C.W. 1979. Diatom mineralization of silicic acid: 4. Kinetics of soluble Si pool formation in exponentially growing and synchronized Navicula pelliculosa. J. Phycol. 15, 210-216.
36. Alexander G.B., Heston W.M., Iler R.K. 1954. The solubility of amorphous silica in water. J. Phys. Chem. 58, 435-455.
37. Drum R.W., Pankratz H.S. 1964. Postmitotic fine structure of Gomphonema parvulum. J. Ultrastruct. Res. 10, 217-223.
38. Reimann B.E.F., Lewin J.C., Volcani B.E. 1965. Studies on biochemistry and fine structure of silica shell formation in diatoms: 1. The structure of the cell wall of Cylindrotheca fusiformis Reimann and Lewin. J. Cell Biol. 24, 39-55.
39. Reimann B.E.F., Lewin J.C., Volcani B.E. 1966. Studies on biochemistry and fine structure of silica shell formation in diatoms: 2. The structure of the cell wall of Navicula pelliculosa (Breb.) Hilse. J. Phycol. 2, 74-84.
40. Round F.E., Crawford R.M., Mann D.G. 1990. The Diatoms. Biology and Morphology of the Genera. Cambridge: Cambridge Univ. Press.
41. Schmid A.M., Schutz D. 1979. Wall morphogenesis in diatoms: Deposition of silica by cytoplasmic vesicles. Protoplasma. 100, 267-288.
42. Gordon R., Drum R.W. 1994. The chemical basis of diatom morphogenesis. Int. Rev. Cytol. 150, 243-372.
43. Pickett-Heaps J., Schmid A.M., Edgar L.A. 1990. The cell biology of diatom valve formation. In: Progress in Phycological Research, vol. 7. Eds. Round F.E., Chapman D.J. Bristol: Biopress, pp. 1-168.
44. Parkinson J., Brechek Y., Gordon R. 1999. Centric diatom morphogenesis: A model based on DLA algorithm investigating the potential role of microtubules. Biochim. Biophys. Acta. 1452, 89-102.
45. Hildebrand M., Wetherbee R. 2003. Components and control of silicification in diatoms. In: Silicon Biomineralization. Biology, Biochemistry, Molecular Biology, Biotechnology. Ed. Müller W.E.G. (Progress in Molecular and Subcellular Biology, vol. 33). Berlin: Springer, pp.11-57.
46. Kröger N., Deutzmann R., Bergsdorf C., Sumper M. 2000. Species-specific polyamines from diatoms: Control of silica morphology. Proc. Natl. Acad. Sci. USA. 97, 14 133-14 138.
47. Swift D.M., Wheeler A.P. 1992. Evidence of an organic matrix from diatom biosilica. J. Phycol. 28, 202-209.
48. Vreiling E.G., Beelen T.P.M., van Santen R.A., Gieskes W.W.C. 1999. Diatom silica biomineralization as an inspirational source of new approaches to silica production. J. Biotechnol. 70, 39-51.