메뉴 건너뛰기




Volumn 13, Issue 1, 1996, Pages 67-75

Evolution of the diatoms (Bacillariophyta). II. Nuclear-encoded small-subunit rRNA sequence comparisons confirm a paraphyletic origin for the centric diatoms

Author keywords

Bacillariophyta; Diatoms; Molecular evolution; Phylogeny; Small subunit ribosomal RNA

Indexed keywords

BACILLARIOPHYTA; COSCINODISCOPHYCEAE; ALGAE;

EID: 0030070720     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025571     Document Type: Article
Times cited : (108)

References (48)
  • 1
    • 0027130098 scopus 로고
    • Ultrastructure and 18S rRNA gene sequence for Pelagomonas calceolata gen. et sp. nov. and the description of a new algal class, the Pelagophyceae classis nov
    • ANDERSEN, R. A., G. W. SAUNDERS, M. P. PASKIND, and J. P. SEXTON. 1993. Ultrastructure and 18S rRNA gene sequence for Pelagomonas calceolata gen. et sp. nov. and the description of a new algal class, the Pelagophyceae classis nov. J. Phycol. 29:701-715.
    • (1993) J. Phycol. , vol.29 , pp. 701-715
    • Andersen, R.A.1    Saunders, G.W.2    Paskind, M.P.3    Sexton, J.P.4
  • 2
    • 0001566085 scopus 로고
    • Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the Chromophyta
    • BHATTACHARYA, D., L. MEDLIN, P. O. WAINWRIGHT, E. V. ARIZTIA, C. BIBEAU, S. K. STICKEL, and M. L. SOGIN. 1992. Algae containing chlorophylls a + c are paraphyletic: molecular evolutionary analysis of the Chromophyta. Evolution 46:1808-1817.
    • (1992) Evolution , vol.46 , pp. 1808-1817
    • Bhattacharya, D.1    Medlin, L.2    Wainwright, P.O.3    Ariztia, E.V.4    Bibeau, C.5    Stickel, S.K.6    Sogin, M.L.7
  • 3
    • 0000479431 scopus 로고
    • Isolation of plant DNA from fresh tissue
    • DOYLE, J. J., and J. L. DOYLE. 1990. Isolation of plant DNA from fresh tissue. Focus 12:13-15.
    • (1990) Focus , vol.12 , pp. 13-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 4
    • 0021970492 scopus 로고
    • The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata
    • ELWOOD, H. J., G. J. OLSEN, and M. L. SOGIN. 1985. The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata. Mol. Biol. Evol. 2:399-410.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 399-410
    • Elwood, H.J.1    Olsen, G.J.2    Sogin, M.L.3
  • 5
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 6
    • 0003954036 scopus 로고
    • Department of Genetics, University of Washington, Seattle, Wash.
    • _. 1993. PHYLIP manual, version 3.5. Department of Genetics, University of Washington, Seattle, Wash.
    • (1993) PHYLIP Manual, Version 3.5
  • 7
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees: A method based on mutation distances as estimated from cytochrome c sequences is of general applicability
    • FITCH, W. M., and E. MARGOLIASH. 1967. Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155:279-284.
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 8
    • 0025638246 scopus 로고
    • Lower Cretaceous diatoms from ODP Leg 113 site 693 Weddell Sea. Part 1: Vegetative cells
    • P. F. Barker, J. P. Kennett et al., eds. College Station, Tex.
    • GERSONDE, R., and D. M. HARWOOD. 1990. Lower Cretaceous diatoms from ODP Leg 113 site 693 Weddell Sea. Part 1: Vegetative cells. Pp. 403-425 in P. F. Barker, J. P. Kennett et al., eds. Proceedings of the Ocean Drilling Program, Scientific Results. Vol. 113. Ocean Drilling Program, College Station, Tex.
    • (1990) Proceedings of the Ocean Drilling Program, Scientific Results. Vol. 113. Ocean Drilling Program , vol.113 , pp. 403-425
    • Gersonde, R.1    Harwood, D.M.2
  • 9
    • 0000924488 scopus 로고
    • The mucilage pore of pennate diatoms
    • HASLE, G. R. 1974. The mucilage pore of pennate diatoms. Nova Hedwigla Beih. 45:167-186.
    • (1974) Nova Hedwigla Beih. , vol.45 , pp. 167-186
    • Hasle, G.R.1
  • 10
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analyses
    • HILLIS, D. M., and J. P. HUELSENBECK. 1992. Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83:189-195.
    • (1992) J. Hered. , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 11
    • 0028362880 scopus 로고
    • Application and accuracy of molecular phylogenies
    • HILLIS, D. M., J. P. HUELSENBECK, and C. W. CUNNINGHAM. 1994. Application and accuracy of molecular phylogenies. Science 264:671-677.
    • (1994) Science , vol.264 , pp. 671-677
    • Hillis, D.M.1    Huelsenbeck, J.P.2    Cunningham, C.W.3
  • 12
    • 3342876454 scopus 로고
    • Aus der Protoplasmatik der Diatomeen
    • HOFLER, K. 1940. Aus der Protoplasmatik der Diatomeen. Ber. Dsch. Bot. Ges. 58:97-320.
    • (1940) Ber. Dsch. Bot. Ges. , vol.58 , pp. 97-320
    • Hofler, K.1
  • 13
    • 0025061094 scopus 로고
    • Limitations of the evolutionary parsimony method of phylogenetic analysis
    • JIN, L., and M. NEI. 1990. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol. Biol. Evol. 7:82-120.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 82-120
    • Jin, L.1    Nei, M.2
  • 14
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro, ed. Academic Press, New York
    • JUKES, T. H., and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in H. N. Munro, ed. Mammalian protein metabolism. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order of the Hominoidea
    • KISHINO, H., and M. HASEGAWA. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order of the Hominoidea. J. Mol. Evol. 29:170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 19
    • 0028154183 scopus 로고
    • The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis
    • LEIPE, D. D., P. O. WAINWRIGHT, J. H. GUNDERSON, D. PORTER, D. J. PATTERSON, F. VALOIS, S. HIMMERICH, and M. L. SOGIN. 1994. The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis. Phycologia 33:369-377.
    • (1994) Phycologia , vol.33 , pp. 369-377
    • Leipe, D.D.1    Wainwright, P.O.2    Gunderson, J.H.3    Porter, D.4    Patterson, D.J.5    Valois, F.6    Himmerich, S.7    Sogin, M.L.8
  • 20
    • 0000995590 scopus 로고
    • Studies on the biochemistry and fine structure of silica shell formation in diatoms. VIII. Morphogenesis of the cell wall in a centric diatom Ditylum brightwellii
    • LI, C.-W., and B. E. VOLCANI. 1985. Studies on the biochemistry and fine structure of silica shell formation in diatoms. VIII. Morphogenesis of the cell wall in a centric diatom Ditylum brightwellii. Protoplasma 124:10-29.
    • (1985) Protoplasma , vol.124 , pp. 10-29
    • Li, C.-W.1    Volcani, B.E.2
  • 21
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • LOCKHART, P. J., M. A. STEEL, M. D. HENDY, and D. PENNY. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:605-612.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 23
    • 0012365450 scopus 로고
    • The origin of the diatom and its life cycle
    • J. C. Green, B. S. C. Leadbeater, and W. L. Diver, eds. Clarendon Press, Oxford, UK
    • MANN, D. G., and H. J. MARCHANT. 1989. The origin of the diatom and its life cycle. Pp. 307-303 in J. C. Green, B. S. C. Leadbeater, and W. L. Diver, eds. The chromophyte algae: problems and perspectives. Clarendon Press, Oxford, UK.
    • (1989) The Chromophyte Algae: Problems and Perspectives , pp. 307-1303
    • Mann, D.G.1    Marchant, H.J.2
  • 24
    • 0000850894 scopus 로고
    • Histochemical and ultrastructural evidence for the function of the labiate process in the movement of centric diatoms
    • MEDLIN, L. K., R. M. CRAWFORD, and R. A. ANDERSEN. 1986. Histochemical and ultrastructural evidence for the function of the labiate process in the movement of centric diatoms. Br. Phycol. J. 21:297-301.
    • (1986) Br. Phycol. J. , vol.21 , pp. 297-301
    • Medlin, L.K.1    Crawford, R.M.2    Andersen, R.A.3
  • 25
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 18S rRNA-coding regions
    • MEDLIN, L. K., H. J. ELWOOD, S. STICKEL, and M. L. SOGIN. 1988. The characterization of enzymatically amplified eukaryotic 18S rRNA-coding regions. Gene 71:491-499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.K.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 26
    • 84989662257 scopus 로고
    • Morphological and genetic variation within the diatom Skeletonema costatum Bacillariophyta: Evidence for a new species, Skeletonema pseudocostatum
    • _. 1991. Morphological and genetic variation within the diatom Skeletonema costatum Bacillariophyta: evidence for a new species, Skeletonema pseudocostatum. J. Phycol. 27: 514-524.
    • (1991) J. Phycol. , vol.27 , pp. 514-524
  • 27
    • 0028154449 scopus 로고
    • Genetic differentiation among three colony-forming species of Phaeocystis: Further evidence for the phylogeny of the Prymnesiophyta
    • MEDLIN, L. K., M. LANGE, and M. E. M. BAUMANN. 1994. Genetic differentiation among three colony-forming species of Phaeocystis: further evidence for the phylogeny of the Prymnesiophyta. Phycologia 33:199-212.
    • (1994) Phycologia , vol.33 , pp. 199-212
    • Medlin, L.K.1    Lange, M.2    Baumann, M.E.M.3
  • 28
    • 0027144898 scopus 로고
    • The evolution of the diatoms (Bacillariophyta). I. Origin of the group and assessment of the monophyly of its major divisions
    • MEDLIN, L. K., D. M. WILLIAMS, and P. A. SIMS. 1993. The evolution of the diatoms (Bacillariophyta). I. Origin of the group and assessment of the monophyly of its major divisions. Eur. J. Phycol. 28:261-275.
    • (1993) Eur. J. Phycol. , vol.28 , pp. 261-275
    • Medlin, L.K.1    Williams, D.M.2    Sims, P.A.3
  • 30
    • 3342890288 scopus 로고
    • New process, genus and family of Lower Cretaceous diatoms from Australia
    • in press
    • NIKOLAEV, V. A., and D. M. HARWOOD. 1995. New process, genus and family of Lower Cretaceous diatoms from Australia. Diatom Res. (in press).
    • (1995) Diatom Res.
    • Nikolaev, V.A.1    Harwood, D.M.2
  • 31
    • 84986758773 scopus 로고
    • Cellular movement in the centric diatom Odontella sinensis
    • PICKETT-HEAPS, J., D. R. A. HILL, and R. WEATHERBEE. 1986. Cellular movement in the centric diatom Odontella sinensis. J. Phycol. 22:234-239.
    • (1986) J. Phycol. , vol.22 , pp. 234-239
    • Pickett-Heaps, J.1    Hill, D.R.A.2    Weatherbee, R.3
  • 32
    • 84989656730 scopus 로고
    • Active gliding motility in an araphid marine diatom, Ardissonea (formerly Synedra) crystallina
    • PICKETT-HEAPS, J., D. R. A. HILL, and K. L. BLAZE. 1991. Active gliding motility in an araphid marine diatom, Ardissonea (formerly Synedra) crystallina. J. Phycol. 27:718-725.
    • (1991) J. Phycol. , vol.27 , pp. 718-725
    • Pickett-Heaps, J.1    Hill, D.R.A.2    Blaze, K.L.3
  • 33
    • 0003169873 scopus 로고
    • Über die Flysch-Fucoiden und einige andere fossile Algen, sowie über liasische, Diatomeen führende Horenschwämme
    • ROTHPLETZ, A. 1896. Über die Flysch-Fucoiden und einige andere fossile Algen, sowie über liasische, Diatomeen führende Horenschwämme. Z. Dsch. Geol. Ges. 48:854-914.
    • (1896) Z. Dsch. Geol. Ges. , vol.48 , pp. 854-914
    • Rothpletz, A.1
  • 34
    • 0001744651 scopus 로고
    • The lines of evolution of the Bacillariophyta. I. Origin
    • ROUND, F. E., and R. M. CRAWFORD. 1981. The lines of evolution of the Bacillariophyta. I. Origin. Proc. R. Soc. Lond. B 211:237-260.
    • (1981) Proc. R. Soc. Lond. B , vol.211 , pp. 237-260
    • Round, F.E.1    Crawford, R.M.2
  • 38
    • 0028952370 scopus 로고
    • Cladistic analyses of combined traditional and molecular data sets reveal an algal lineage
    • SAUNDERS, G. W., D. POTTER, M. P. PASKIND, and R. A. ANDERSEN. 1995. Cladistic analyses of combined traditional and molecular data sets reveal an algal lineage. Proc. Natl. Acad. Sci. USA 92:244-248.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 244-248
    • Saunders, G.W.1    Potter, D.2    Paskind, M.P.3    Andersen, R.A.4
  • 39
    • 0002852044 scopus 로고
    • Wall morphogenesis in Thalassiosira eccentrica: Comparison of auxospore formation and the effects of MT-inhibitors
    • D. G. Mann, ed. Philadelphia 1982. O. Koeltz, Koenigstein, Germany
    • SCHMID, A.-M. M. 1984. Wall morphogenesis in Thalassiosira eccentrica: comparison of auxospore formation and the effects of MT-inhibitors. Pp. 42-70 in D. G. Mann, ed. Proceedings of the 7th International Diatom Symposium, Philadelphia 1982. O. Koeltz, Koenigstein, Germany.
    • (1984) Proceedings of the 7th International Diatom Symposium , pp. 42-70
    • Schmid, A.-M.M.1
  • 40
    • 0006937576 scopus 로고
    • The special Golgi-ER-mitochondrium unit in the diatom genus Coscinodiscus
    • _. 1988. The special Golgi-ER-mitochondrium unit in the diatom genus Coscinodiscus. Pl. Syst. Evol. 158:211-223.
    • (1988) Pl. Syst. Evol. , vol.158 , pp. 211-223
  • 41
    • 0013392902 scopus 로고
    • Geitler's "Plattenband" in the diatom Synedra cf. ulna in the light of TEM investigations
    • _. 1989. Geitler's "Plattenband" in the diatom Synedra cf. ulna in the light of TEM investigations. Plant Syst. Evol. 164:239-252.
    • (1989) Plant Syst. Evol. , vol.164 , pp. 239-252
  • 42
    • 0028005307 scopus 로고
    • Aspects of morphogenesis and function of diatom cell walls with implications for taxonomy
    • _. 1994. Aspects of morphogenesis and function of diatom cell walls with implications for taxonomy. Protoplasma 181:43-60.
    • (1994) Protoplasma , vol.181 , pp. 43-60
  • 43
    • 0029140048 scopus 로고
    • A preliminary phylogeny of diatoms based on 28S ribosomal RNA sequence data
    • SORHANNUS, U., F. GASSE, R. PERASSO, and A. BAROIN-TOURANCHEAU. 1995. A preliminary phylogeny of diatoms based on 28S ribosomal RNA sequence data. Phycologia 34:65-73.
    • (1995) Phycologia , vol.34 , pp. 65-73
    • Sorhannus, U.1    Gasse, F.2    Perasso, R.3    Baroin-Tourancheau, A.4
  • 45
    • 0001140522 scopus 로고
    • Phylogeny reconstruction
    • D. M. Hillis and C. Moritz, eds. Sinauer Associates, Sunderland, Mass.
    • SWOFFORD, D. L., and G. J. OLSEN. 1990. Phylogeny reconstruction. Pp. 411-501 in D. M. Hillis and C. Moritz, eds. Molecular systematics. Sinauer Associates, Sunderland, Mass.
    • (1990) Molecular Systematics , pp. 411-501
    • Swofford, D.L.1    Olsen, G.J.2
  • 46
    • 0027313056 scopus 로고
    • Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: Calibration of the molecular clock
    • VAN DE PEER, Y., J.-M. NEEFS, P. DE RIJK, and R. DE WACHTER. 1993. Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: calibration of the molecular clock. J. Mol. Evol. 37:221-232.
    • (1993) J. Mol. Evol. , vol.37 , pp. 221-232
    • Van De Peer, Y.1    Neefs, J.-M.2    De Rijk, P.3    De Wachter, R.4
  • 47
    • 0000765047 scopus 로고
    • Observations on Bellerochea and Streptotheca, including descriptions of three new planktonic diatom species
    • VON STOSCH, H. A. 1977. Observations on Bellerochea and Streptotheca, including descriptions of three new planktonic diatom species. Nova Hedwigia Beih. 54:113-166.
    • (1977) Nova Hedwigia Beih. , vol.54 , pp. 113-166
    • Von Stosch, H.A.1
  • 48
    • 0023184331 scopus 로고
    • Bacterial evolution
    • WOESE, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51: 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.