메뉴 건너뛰기




Volumn 21, Issue 12, 2005, Pages 2861-2866

Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; BIOSTATISTICS; DATA BASE; DOWNSTREAM PROCESSING; GENE EXPRESSION; GENE PROBE; GENE REPLICATION; GENETIC ANALYSIS; GENETIC VARIABILITY; MATHEMATICAL COMPUTING; OLIGONUCLEOTIDE PROBE; PREDICTION; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; STATISTICAL ANALYSIS;

EID: 20844440189     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti413     Document Type: Article
Times cited : (8)

References (18)
  • 1
    • 3242688534 scopus 로고    scopus 로고
    • Affymetrix Affymetrix Santa Clara, CA, version 5 edition
    • Affymetrix (2002) Affymetrix Microarray Suite User Guide. Affymetrix Santa Clara, CA, version 5 edition.
    • (2002) Affymetrix Microarray Suite User Guide
  • 2
    • 2942520985 scopus 로고    scopus 로고
    • Profiling and functional annotation of mRNA gene expression in pediatric rhabdomyosarcoma and Ewing's sarcoma
    • Baer,C. et al. (2004) Profiling and functional annotation of mRNA gene expression in pediatric rhabdomyosarcoma and Ewing's sarcoma. Int. J. Cancer, 110, 687-694.
    • (2004) Int. J. Cancer , vol.110 , pp. 687-694
    • Baer, C.1
  • 3
    • 2542576435 scopus 로고    scopus 로고
    • Changes in gene expression induced by phosphorothioate oligodeoxynucleotides (including G3139) in PC3 prostate carcinoma cells are recapitulated at least in part by treatment with interferon-beta and -gamma
    • Benimetskaya,L. et al. (2004) Changes in gene expression induced by phosphorothioate oligodeoxynucleotides (including G3139) in PC3 prostate carcinoma cells are recapitulated at least in part by treatment with interferon-beta and -gamma. Clin. Cancer Res., 10, 3678-3688.
    • (2004) Clin. Cancer Res. , vol.10 , pp. 3678-3688
    • Benimetskaya, L.1
  • 5
    • 2342426729 scopus 로고    scopus 로고
    • Gene selection for oligonucleotide array: An approach using PM probe level data
    • Chen,D.T. et al. (2004) Gene selection for oligonucleotide array: an approach using PM probe level data. Bioinformatics, 20, 854-886.
    • (2004) Bioinformatics , vol.20 , pp. 854-886
    • Chen, D.T.1
  • 6
    • 3843101644 scopus 로고    scopus 로고
    • Oligonucleotide microarray analysis reveals PDX1 as an essential regulator of mitochondrial metabolism in rat islets
    • Gauthier,B.R. et al. (2004) Oligonucleotide microarray analysis reveals PDX1 as an essential regulator of mitochondrial metabolism in rat islets. J. Biol. Chem., 279, 31121-31130.
    • (2004) J. Biol. Chem. , vol.279 , pp. 31121-31130
    • Gauthier, B.R.1
  • 7
    • 2442534172 scopus 로고    scopus 로고
    • Microarrays in cancer research
    • Grant,G.M. et al. (2004) Microarrays in cancer research. Anticancer Res., 24, 441-448.
    • (2004) Anticancer Res. , vol.24 , pp. 441-448
    • Grant, G.M.1
  • 8
    • 0242318322 scopus 로고    scopus 로고
    • Mixed-model reanalysis of primate data suggests tissue and species biases in oligonucleotide-based gene expression profiles
    • Hsieh,W.P. et al. (2003) Mixed-model reanalysis of primate data suggests tissue and species biases in oligonucleotide-based gene expression profiles. Genetics, 165, 747-757.
    • (2003) Genetics , vol.165 , pp. 747-757
    • Hsieh, W.P.1
  • 9
    • 12344280017 scopus 로고    scopus 로고
    • Summaries of Affymetrix GeneChip probe level data
    • Irizarry,R.A. et al. (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res., 31, e15.
    • (2003) Nucleic Acids Res. , vol.31
    • Irizarry, R.A.1
  • 10
    • 17744413236 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
    • research
    • Li,C. and Wong,W.H. (2001a) Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol., 2, research 0032.1-0032.11.
    • (2001) Genome Biol. , vol.2
    • Li, C.1    Wong, W.H.2
  • 11
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li,C. and Wong,W.H. (2001b) Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc. Natl Acad. Sci. USA, 98, 31-36.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 12
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • Modrek,B. and Lee,C. (2002) A genomic view of alternative splicing. Nat. Gene., 30, 13-19.
    • (2002) Nat. Gene , vol.30 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 13
    • 0037590376 scopus 로고    scopus 로고
    • The limit fold change model: A practical approach for selecting differentially expressed genes from microarray data
    • Mutch,D.M., Berger,A., Mansourian,R., Rytz,A., Roberts,M.A. (2002) The limit fold change model: A practical approach for selecting differentially expressed genes from microarray data. BMC Bioinformatics, 3, 17.
    • (2002) BMC Bioinformatics , vol.3 , pp. 17
    • Mutch, D.M.1    Berger, A.2    Mansourian, R.3    Rytz, A.4    Roberts, M.A.5
  • 14
    • 0141994853 scopus 로고    scopus 로고
    • Towards integrated clinico-genomic models for personalized medicine: Combining gene expression signatures and clinical factors in breast cancer outcomes prediction
    • Spec No 2
    • Nevins,J.R. et al. (2003) Towards integrated clinico-genomic models for personalized medicine: combining gene expression signatures and clinical factors in breast cancer outcomes prediction. Hum. Mol. Genet., 12 Spec No 2, R153-157.
    • (2003) Hum. Mol. Genet. , vol.12
    • Nevins, J.R.1
  • 15
    • 2442695564 scopus 로고    scopus 로고
    • Expression profiling of t(12;22) positive clear cell sarcoma of soft tissue cell lines reveals characteristic up-regulation of potential new marker genes including ERBB3
    • Schaefer,K.L. et al. (2004) Expression profiling of t(12;22) positive clear cell sarcoma of soft tissue cell lines reveals characteristic up-regulation of potential new marker genes including ERBB3. Cancer Res., 64, 3395-3405.
    • (2004) Cancer Res. , vol.64 , pp. 3395-3405
    • Schaefer, K.L.1
  • 16
    • 0042838307 scopus 로고    scopus 로고
    • Breast cancer classification and prognosis based on gene expression profiles from a population-based study
    • Sotiriou,C. et al. (2003) Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proc. Natl Acad. Sci. USA, 100, 10393-10398.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 10393-10398
    • Sotiriou, C.1
  • 17
    • 0037106535 scopus 로고    scopus 로고
    • Estimating the statistical significance of gene expression changes observed with oligonucleotide arrays
    • Straud,A.D. et al. (2002) Estimating the statistical significance of gene expression changes observed with oligonucleotide arrays. Hum. Mol. Genet., 11, 2207-2221.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 2207-2221
    • Straud, A.D.1
  • 18
    • 0037271069 scopus 로고    scopus 로고
    • The future of clinical cancer management: One tumor, one chip
    • Yeatman,T.J. (2003) The future of clinical cancer management: one tumor, one chip. Am. Surg., 69, 41-44.
    • (2003) Am. Surg. , vol.69 , pp. 41-44
    • Yeatman, T.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.