메뉴 건너뛰기




Volumn 94, Issue 6, 2005, Pages 623-629

Comparing Bayesian estimates of genetic differentiation of molecular markers and quantitative traits: An application to Pinus sylvestris

Author keywords

Fst; Genetic drift; MCMC; Population structure; Qst; Scots pine; Selection

Indexed keywords

GENETIC VARIATION;

EID: 20444480694     PISSN: 0018067X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.hdy.6800672     Document Type: Article
Times cited : (32)

References (46)
  • 2
    • 0042634161 scopus 로고    scopus 로고
    • Likelihood-based inference for genetic correlation coefficients
    • Balding DJ (2003). Likelihood-based inference for genetic correlation coefficients. Theor Popul Biol 63: 221-230.
    • (2003) Theor Popul Biol , vol.63 , pp. 221-230
    • Balding, D.J.1
  • 3
    • 0033831392 scopus 로고    scopus 로고
    • Microsatellites can be misleading: An empirical and simulation study
    • Balloux F, Brünner H, Lugon-Moulin N, Hausser J, Goudet J (2000). Microsatellites can be misleading: an empirical and simulation study. Evolution 54: 1414-1422.
    • (2000) Evolution , vol.54 , pp. 1414-1422
    • Balloux, F.1    Brünner, H.2    Lugon-Moulin, N.3    Hausser, J.4    Goudet, J.5
  • 4
    • 0036245475 scopus 로고    scopus 로고
    • Understanding quantitative genetic variation
    • Barton NH, Keightley PD (2002). Understanding quantitative genetic variation. Nat Rev Genet 3: 11-21.
    • (2002) Nat Rev Genet , vol.3 , pp. 11-21
    • Barton, N.H.1    Keightley, P.D.2
  • 5
    • 1842532350 scopus 로고    scopus 로고
    • The Bayesian revolution in genetics
    • Beaumont MA, Rannala B (2004). The Bayesian revolution in genetics. Nat Rev Genet 5: 251-261.
    • (2004) Nat Rev Genet , vol.5 , pp. 251-261
    • Beaumont, M.A.1    Rannala, B.2
  • 6
    • 7244224987 scopus 로고    scopus 로고
    • BAPS 2: Enhanced possibilities for the analysis of genetic population structure
    • Corander J, Waldmann P, Marttinen P, Sillanpää MJ (2004). BAPS 2: enhanced possibilities for the analysis of genetic population structure. Bioinformatics 20: 2363-2369.
    • (2004) Bioinformatics , vol.20 , pp. 2363-2369
    • Corander, J.1    Waldmann, P.2    Marttinen, P.3    Sillanpää, M.J.4
  • 7
    • 0037274702 scopus 로고    scopus 로고
    • Bayesian analysis of genetic differentiation between populations
    • Corander J, Waldmann P, Sillanpää MJ (2003). Bayesian analysis of genetic differentiation between populations. Genetics 163: 367-374.
    • (2003) Genetics , vol.163 , pp. 367-374
    • Corander, J.1    Waldmann, P.2    Sillanpää, M.J.3
  • 8
    • 0000154614 scopus 로고
    • Genetic evaluation methods for populations with dominance and inbreeding
    • De Boer IJM, Hoeschele I (1993). Genetic evaluation methods for populations with dominance and inbreeding. Theor Appl Genet 86: 245-258.
    • (1993) Theor Appl Genet , vol.86 , pp. 245-258
    • De Boer, I.J.M.1    Hoeschele, I.2
  • 10
    • 0002509843 scopus 로고    scopus 로고
    • Analysis of population subdivision
    • Balding DJ, Bishop M, Cannings C (eds) Wiley: NY
    • Excoffier L (2001). Analysis of population subdivision. In: Balding DJ, Bishop M, Cannings C (eds) Handbook of Statistical Genetics. Wiley: NY. pp 271-307.
    • (2001) Handbook of Statistical Genetics , pp. 271-307
    • Excoffier, L.1
  • 11
    • 0042133207 scopus 로고    scopus 로고
    • Exact moment calculations for genetic models with migration, mutation, and drift
    • Fu R, Gelfand AE, Holsinger KE (2003). Exact moment calculations for genetic models with migration, mutation, and drift. Theor Popul Biol 63: 231-243.
    • (2003) Theor Popul Biol , vol.63 , pp. 231-243
    • Fu, R.1    Gelfand, A.E.2    Holsinger, K.E.3
  • 12
    • 0038788126 scopus 로고    scopus 로고
    • Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris
    • García-Gil MR, Mikkonen M, Savolainen O (2003). Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris. Mol Ecol 12: 1195-1206.
    • (2003) Mol Ecol , vol.12 , pp. 1195-1206
    • García-Gil, M.R.1    Mikkonen, M.2    Savolainen, O.3
  • 13
    • 0001574731 scopus 로고
    • Efficient parametrizations for normal linear mixed models
    • Gelfand AE, Sahu SK, Carlin BP (1995). Efficient parametrizations for normal linear mixed models. Biometrika 82: 479-488.
    • (1995) Biometrika , vol.82 , pp. 479-488
    • Gelfand, A.E.1    Sahu, S.K.2    Carlin, B.P.3
  • 16
    • 0036382081 scopus 로고    scopus 로고
    • Population genetic structure in a Mediterranean pine (Pinus pinaster Ait.): A comparison of allozyme markers and quantitative traits
    • Gonzalez-Martínez SC, Alia R, Gil L (2002). Population genetic structure in a Mediterranean pine (Pinus pinaster Ait.): a comparison of allozyme markers and quantitative traits. Heredity 89: 199-206.
    • (2002) Heredity , vol.89 , pp. 199-206
    • Gonzalez-Martínez, S.C.1    Alia, R.2    Gil, L.3
  • 17
    • 0032832829 scopus 로고    scopus 로고
    • Analysis of genetic diversity in geographically structured populations: A Bayesian perspective
    • Holsinger KE (1999). Analysis of genetic diversity in geographically structured populations: a Bayesian perspective. Hereditas 130: 245-255.
    • (1999) Hereditas , vol.130 , pp. 245-255
    • Holsinger, K.E.1
  • 18
    • 20444476422 scopus 로고    scopus 로고
    • Department of Ecology and Evolutionary Biology, University of Connecticut, CT
    • Holsinger KE, Lewis PO (2003) Hickory. Ver. 1.0. Department of Ecology and Evolutionary Biology, University of Connecticut, CT. Available via http://www.eeb.uconn.edu/.
    • (2003) Hickory. Ver. 1.0
    • Holsinger, K.E.1    Lewis, P.O.2
  • 19
    • 0035210240 scopus 로고    scopus 로고
    • Contrasting evolutionary forces driving populations structure at expressed sequence tag polymorphisms, allozymes and quantitative traits in white spruce
    • Jaramillo-Correa JP, Beaulieu J, Bousquet J (2001). Contrasting evolutionary forces driving populations structure at expressed sequence tag polymorphisms, allozymes and quantitative traits in white spruce. Mol Ecol 10: 2729-2740.
    • (2001) Mol Ecol , vol.10 , pp. 2729-2740
    • Jaramillo-Correa, J.P.1    Beaulieu, J.2    Bousquet, J.3
  • 20
  • 21
    • 0026591962 scopus 로고
    • Neutral theory of quantitative genetic variance in an island model with local extinction and colonization
    • Lande R (1992). Neutral theory of quantitative genetic variance in an island model with local extinction and colonization. Evolution 46: 381-389.
    • (1992) Evolution , vol.46 , pp. 381-389
    • Lande, R.1
  • 22
    • 0031956327 scopus 로고    scopus 로고
    • Differentiation of allelic frequencies at quantitative trait loci affecting locally adaptive traits
    • Latta RG (1998). Differentiation of allelic frequencies at quantitative trait loci affecting locally adaptive traits. Am Nat 151: 283-292.
    • (1998) Am Nat , vol.151 , pp. 283-292
    • Latta, R.G.1
  • 23
    • 0043210649 scopus 로고    scopus 로고
    • Genetic variability at neutral markers, quantitative trait loci and trait in a subdivided population under selection
    • Le Corre V, Kremer A (2003). Genetic variability at neutral markers, quantitative trait loci and trait in a subdivided population under selection. Genetics 164: 1205-1219.
    • (2003) Genetics , vol.164 , pp. 1205-1219
    • Le Corre, V.1    Kremer, A.2
  • 24
    • 0041817554 scopus 로고    scopus 로고
    • The effect of neutral nonadditive gene action on the quantitative index of population divergence
    • Lopez-Fanjul C, Fernandez A, Toro MA (2003). The effect of neutral nonadditive gene action on the quantitative index of population divergence. Genetics 164: 1627-1633.
    • (2003) Genetics , vol.164 , pp. 1627-1633
    • Lopez-Fanjul, C.1    Fernandez, A.2    Toro, M.A.3
  • 25
    • 0002495892 scopus 로고
    • The neutral theory of phenotypic evolution
    • Real L (ed) Princeton University Press: Princeton, NJ
    • Lynch M (1994). The neutral theory of phenotypic evolution. In: Real L (ed) Ecological Genetics. Princeton University Press: Princeton, NJ. pp 85-108.
    • (1994) Ecological Genetics , pp. 85-108
    • Lynch, M.1
  • 27
    • 0036603630 scopus 로고    scopus 로고
    • Adaptive population divergence: Markers, QTL, and traits
    • McKay JK, Latta RC (2002). Adaptive population divergence: markers, QTL, and traits. Trends Ecol Evol 17: 285-291.
    • (2002) Trends Ecol Evol , vol.17 , pp. 285-291
    • McKay, J.K.1    Latta, R.C.2
  • 28
    • 0035670347 scopus 로고    scopus 로고
    • Comparison of genetic differentiation at marker loci and quantitative traits
    • Merilä J, Crnokrak P (2001). Comparison of genetic differentiation at marker loci and quantitative traits. J Evol Biol 14: 892-903.
    • (2001) J Evol Biol , vol.14 , pp. 892-903
    • Merilä, J.1    Crnokrak, P.2
  • 29
    • 0001339647 scopus 로고
    • Effective population sizes, genetic variability, and mating system in natural stands and seed orchards of Pinus sylvestris
    • Muona O, Harju A (1989). Effective population sizes, genetic variability, and mating system in natural stands and seed orchards of Pinus sylvestris. Silvae Genetica 38: 221-228.
    • (1989) Silvae Genetica , vol.38 , pp. 221-228
    • Muona, O.1    Harju, A.2
  • 30
    • 0037630927 scopus 로고    scopus 로고
    • Latitudinal divergence of common frog (Rana temporaria) life history traits by natural selection: Evidence from a comparison of molecular and quantitative genetic data
    • Palo JU, O'Hara RB, Laugen AT, Laurila A, Primmer CR, Merilä J (2003). Latitudinal divergence of common frog (Rana temporaria) life history traits by natural selection: evidence from a comparison of molecular and quantitative genetic data. Mol Ecol 12: 1963-1978.
    • (2003) Mol Ecol , vol.12 , pp. 1963-1978
    • Palo, J.U.1    O'Hara, R.B.2    Laugen, A.T.3    Laurila, A.4    Primmer, C.R.5    Merilä, J.6
  • 33
    • 0029055314 scopus 로고
    • Population structure of morphological traits in Clarkia dudleyana. I. Comparison of FST between allozymes and morphological traits
    • Podolsky RH, Holtsford TP (1995). Population structure of morphological traits in Clarkia dudleyana. I. Comparison of FST between allozymes and morphological traits. Genetics 140: 733-744.
    • (1995) Genetics , vol.140 , pp. 733-744
    • Podolsky, R.H.1    Holtsford, T.P.2
  • 34
    • 0024316984 scopus 로고
    • Ecological aspects of the heritability of body size in Drosophila buzzatii
    • Prout T, Barker JSF (1989). Ecological aspects of the heritability of body size in Drosophila buzzatii. Genetics 123: 803-813.
    • (1989) Genetics , vol.123 , pp. 803-813
    • Prout, T.1    Barker, J.S.F.2
  • 35
    • 0034926475 scopus 로고    scopus 로고
    • How closely related are molecular and quantitative measures of genetic variation? A meta-analysis
    • Reed DH, Frankham R (2001). How closely related are molecular and quantitative measures of genetic variation? A meta-analysis. Evolution 55: 1095-1103.
    • (2001) Evolution , vol.55 , pp. 1095-1103
    • Reed, D.H.1    Frankham, R.2
  • 36
  • 38
    • 0027370038 scopus 로고
    • Population structure in Daphnia obtusa: Quantitative genetic and allozyme variation
    • Spitze K (1993). Population structure in Daphnia obtusa: quantitative genetic and allozyme variation. Genetics 135: 367-374.
    • (1993) Genetics , vol.135 , pp. 367-374
    • Spitze, K.1
  • 39
    • 0031949827 scopus 로고    scopus 로고
    • Comparison of quantitative genetic variation and allozyme diversity within and between populations of Scabiosa canescens and S. columbria
    • Waldmann P, Andersson S (1998). Comparison of quantitative genetic variation and allozyme diversity within and between populations of Scabiosa canescens and S. columbria. Heredity 81: 79-86.
    • (1998) Heredity , vol.81 , pp. 79-86
    • Waldmann, P.1    Andersson, S.2
  • 40
    • 0036957370 scopus 로고    scopus 로고
    • Estimating F-statistics
    • Weir BS, Hill WG (2002). Estimating F-statistics. Ann Rev Genet 36: 721-750.
    • (2002) Ann Rev Genet , vol.36 , pp. 721-750
    • Weir, B.S.1    Hill, W.G.2
  • 41
    • 0033382484 scopus 로고    scopus 로고
    • Neutral additive genetic variance in a meta-population
    • Whitlock MC (1999). Neutral additive genetic variance in a meta-population. Genet Res 74: 215-221.
    • (1999) Genet Res , vol.74 , pp. 215-221
    • Whitlock, M.C.1
  • 42
    • 0036842632 scopus 로고    scopus 로고
    • Population divergence of genetic (co)variance matrices in a subdivided plant species, Brassica cretica
    • Widen B, Andersson S, Rao G-Y, Widen M (2002). Population divergence of genetic (co)variance matrices in a subdivided plant species, Brassica cretica. J Evol Biol 15: 961-970.
    • (2002) J Evol Biol , vol.15 , pp. 961-970
    • Widen, B.1    Andersson, S.2    Rao, G.-Y.3    Widen, M.4
  • 44
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright S (1951). The genetical structure of populations. Ann Eugen 15: 323-354.
    • (1951) Ann Eugen , vol.15 , pp. 323-354
    • Wright, S.1
  • 45
    • 0000862605 scopus 로고
    • The interpretation of population structure by F-statistics with special regard to system mating
    • Wright S (1965). The interpretation of population structure by F-statistics with special regard to system mating. Evolution 19: 395-420.
    • (1965) Evolution , vol.19 , pp. 395-420
    • Wright, S.1
  • 46
    • 0029956077 scopus 로고    scopus 로고
    • A comparison of isozyme and quantitative genetic variation in Pinus contorta ssp. latifolia by Fst
    • Yang RC, Yeh FC, Yanchuck AD (1996). A comparison of isozyme and quantitative genetic variation in Pinus contorta ssp. latifolia by Fst. Genetics 142: 1045-1052.
    • (1996) Genetics , vol.142 , pp. 1045-1052
    • Yang, R.C.1    Yeh, F.C.2    Yanchuck, A.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.