Comparative analysis of early embryonic sunflower cDNA libraries

Plant Molecular Biology

Volumn 57, Issue 2, 2005, Pages 255-270

  Ben, Cécile ^a   Hewezi, Tarek ^a   Jardinaud, Marie Françoise ^a   Bena, Frédérique ^b   Ladouce, Nathalie ^a   Moretti, Sébastien ^a   Tamborindeguy, Cecilia ^a   Liboz, Thierry ^a   Petitprez, Michel ^a   Gentzbittel, Laurent ^a  

^a UNIVERSITÉ DE TOULOUSE   (France)

^b INST DE BIOL MOLEC DES PLANTES   (France)

Author keywords

cDNA libraries; Embryogenesis; Expressed sequence tags (ESTs); Helianthus annuus L.; Seed development

Indexed keywords

CYTOLOGY; DNA; GENES; MICROSCOPIC EXAMINATION; NUCLEIC ACID SEQUENCES; PROTEINS; STATISTICAL METHODS;

CONFOCAL MICROSCOPY; EMBRYOGENESIS; EXPRESSED SEQUENCE TAGS (EST); GENE EXPRESSION;

PLANTS (BOTANY);

COMPLEMENTARY DNA;

ARTICLE; CHEMISTRY; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR GENETICS; PLANT SEED; PRENATAL DEVELOPMENT; SUNFLOWER;

CLUSTER ANALYSIS; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; HELIANTHUS; MOLECULAR SEQUENCE DATA; SEEDS; SEQUENCE ANALYSIS, DNA;

CYTOLOGY; EMBRYOS; GENES; HELIANTHUS; MICROSCOPY; NUCLEIC ACIDS; PROTEINS; STATISTICAL ANALYSIS;

ANIMALIA; DICOTYLEDONEAE; HELIANTHUS; HELIANTHUS ANNUUS;

EID: 20244368684     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-004-7532-2     Document Type: Article

References (39)

1. Al-Chaarani, G., Gentzbittel, L., Huang, X.Q. and Sarrafi, A. 2004. Genotypic variation and identification of QTLs for agronomic traits, using AFLP and SSR markers in RILs of sunflower (Helianthus annuus L.). Theor. Appl. Genet. DOI 10.1007/s00122-004-170-1 (In press)
2. A. Barakat K. Szick-Miranda I.F. Chang R. Guyot G. Blanc R. Cooke M. Delseny J. Bailey-Serres 2001 The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome Plant Physiol. 127 2 398 415
3. K. Belanger R. Quatrano 2000 Polarity: the role of localized secretion Curr. Opin. Plant Biol. 3 67 72
4. R.E. Boswell M.E. Prout J.C. Steichen 1991 Mutations in a newly identified Drosophila melanogaster gene, mago nashi, disrupt germ cell formation and result in the formation of mirror-image symmetrical double abdomen embryos Development 113 373 384
5. M. Caboche M. Boucly 2000 The Genoplante programme, a mobilizing programme in plant genomics Comptes Rend. Acad. Agric. France 86 159 173
6. E.B. Cahoon T.J. Carlson K.G. Ripp B.J. Schweiger G.A. Cook S.E. Hall A.J. Kinney 1999 Biosynthetic origin of conjugated double bonds: production of fatty acid components of high-value drying oils in transgenic soybean embryos Proc. Natl. Acad. Sci. USA 96 22 12935 12940
7. W.W. Cai J. Reneker C.W. Chow M. Vaishnav A. Bradley 1998 An anchored framework BAC map of mouse chromosome 11 assembled using multiplex oligonucleotide hybridization Genomics 54 3 387 397
8. A. Chaudhury A. Koltunow T. Payne M. Luo M. Tucker E. Dennis W. Peacock 2001 Control of early seed development Annu. Rev. Cell Dev. Biol. 17 677 699
9. P. Chomczynski N. Sacchi 1987 Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal. Biochem. 162 156 159
10. R.M. Ewing A.B. Kahla O. Poirot F. Lopez S. Audic J.M. Claverie 1999 Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression Genome Res. 9 10 950 959
11. M. Fedorova J. van de Mortel P.A. Matsumoto J. Cho C.D. Town K.A. VandenBosch J.S. Gantt C.P. Vance 2002 Genome-wide identification of nodule-specific transcripts in the model legume Medicago truncatula Plant Physiol. 130 2 519 537
12. J. Fernandes V. Brendel X. Gai S. Lal V.L. Chandler R.P. Elumalai D.W. Galbraith E.A. Pierson V. Walbot 2002 Comparison of RNA expression profiles based on maize expressed sequence tag frequency analysis and micro-array hybridization Plant Physiol. 128 3 896 910
13. L. Gentzbittel A. Abbott J. Galaud L. Georgi F. Fabre T. Liboz G. Alibert 2002 A bacterial artificial chromosome (BAC) library for sunflower, and identification of clones containing genes for putative transmembrane receptors Mol. Genet. Genomics 266 979 987
14. R. Goldberg G. de Paiva R. Yadegari 1994 Plant embryogenesis: zygote to seed Science 266 605 614
15. R. Heidstra D. Welch B. Scheres 2004 Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROW action in asymmetric cell division Genes Dev. 18 16 1964 1969
16. G. Jurgens 1995 Axis formation in plant embryogenesis: cues and clues Cell 81 467 470
17. G. Jurgens 2001 Apical-basal pattern formation in Arabidopsis embryogenesis EMBO J 20 3609 3616
18. G. Jurgens M. Grebe T. Steinmann 1997 Establishment of cell polarity during early plant development Curr. Opin. Cell. Biol. 9 849 852
19. A. Karsi A. Patterson J. Feng Z. Liu 2002 Translational machinery of channel catfish: I A transcriptomic approach to the analysis of 32 40S ribosomal protein genes and their expression. Gene 291 177 186
20. R.W. Kwong A.Q. Bui H. Lee L.W. Kwong R.L. Fischer R.B. Goldberg J.J. Harada 2003 LEAFY COTYLEDON1-LIKE defines a class of regulators essential for embryo development Plant Cell. 15 1 5 18
21. H. Lee R.L. Fischer R.B. Goldberg J.J. Harada 2003 Arabidopsis LEAFY COTYLEDON1 represents a functionally specialized subunit of the CCAAT binding transcription factor Proc. Natl. Acad. Sci. USA 100 4 2152 2156
22. K.J. Livak T.D. Schmittgen 2001 Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method Meth 25 4 402 408
23. K. Lynn A. Fernandez A. Mitsuhiro J. Sedbrook M. Tasaka P. Masson M.K. Barton 1999 The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene Development 126 469 481
24. D.W. Meinke 1985 Embryo-lethal mutants of Arabidopsis thaliana: analysis of mutants with a wide range of lethal phases Theor. Appl. Genet. 69 543 552
25. K.L. Newman A.G. Fernandez M.K. Barton 2002 Regulation of axis determinacy by the Arabidopsis PINHEAD gene Plant Cell. 14 12 3029 3042
26. Y. Ogihara K. Mochida Y. Nemoto K. Murai Y. Yamazaki T. Shin-I Y. Kohara 2003 Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags Plant J. 33 6 1001 1011
27. Ohlrogge, J. and Benning, C. 2000. Unraveling plant metabolism by EST analysis. Curr. Opin. Plant Biol. 3(3): 224-228 (Review).
28. C.M. Ronning S.S. Stegalkina R.A. Ascenzi O. Bougri A.L. Hart T.R. Utterbach S.E. Vanaken S.B. Riedmuller J.A. White J. Cho G.M. Pertea Y. Lee S. Karamycheva R. Sultana J. Tsai J. Quackenbush H.M. Griffiths S. Restrepo C.D. Smart W.E. Fry R. VanDer Hoeven S. Tanksley P. Zhang H. Jin M.L. Yamamoto B.J. Baker C.R. Buell 2003 Comparative analyses of potato expressed sequence tag libraries Plant Physiol. 131 2 419 429
29. K. Schrick U. Mayer A. Horrichs C. Kuhnt C. Bellini J. Dangl J. Schmidt G. Jurgens 2000 FACKEL is a sterol C-14 reductase required for organized cell division and expansion in Arabidopsis embryogenesis Genes Dev. 14 12 1471 1484
30. M. Souter K. Lindsey 2000 Polarity and signalling in plant embryogenesis J. Exp. Bot. 51 971 983
31. I.A. Sparkes F. Brandizzi S.P. Slocombe M. El-Shami C. Hawes A. Baker 2003 An Arabidopsis pex10 null mutant is embryo lethal, implicating peroxisomes in an essential role during plant embryogenesis Plant Physiol. 133 4 1809 1819
32. D. Stekel Y. Git F. Falciani 2000 The comparison of gene expression from multiple cDNA libraries Genome Res. 10 2055 2061
33. M.C. Suh M.J. Kim C.G. Hur J.M. Bae Y.I. Park C.H. Chung C.W. Kang J.B. Ohlrogge 2003 Comparative analysis of expressed sequence tags from Sesamum indicum and Arabidopsis thaliana developing seeds Plant Mol. Biol. 52 6 1107 1123
34. C. Tamborindeguy C. Ben T. Liboz L. Gentzbittel 2004 Sequence evaluation of four specific cDNA libraries for developmental genomics of sunflower Mol. Genet. Genomics 271 3 367 375
35. S. Tang J.K. Yu B. Slabaugh K. Shintani J. Knapp 2002 Simple sequence repeat map of the Sunflower genome Theor. Appl. Genet. 105 1124 1136
36. F.J. van de Loo S. Turner C. Somerville 1995 Expressed Sequence Tags from Developing Castor Seeds Plant Physiol. 108 3 1141 1150
37. M. West J.J. Harada 1993 Embryogenesis in higher plants: an overview Plant Cell 5 1361 1369
38. J.A. White J. Todd T. Newman N. Focks T. Girke O.M. de Ilarduya J.G. Jaworski J.B. Ohlrogge C. Benning 2000 A new set of Arabidopsis expressed sequence tags from developing seeds. The metabolic pathway from carbohydrates to seed oil Plant Physiol. 124 4 1582 1594
39. J.L. Zimmerman 1993 Somatic embryogenesis: a model for early development in higher plants Plant Cell 5 1411 1423