Two-dimensional electrophoretic profiling of normal human kidney glomerulus proteome and construction of an extensible markup language (XML)-based database

Proteomics

Volumn 5, Issue 4, 2005, Pages 1083-1096

  Yoshida, Yutaka ^a   Miyazaki, Kenji ^b   Kamiie, Junichi ^a   Sato, Masao ^b   Okuizumi, Seiji ^b   Kenmochi, Akihisa ^b   Kamijo, Ken'ichi ^b   Nabetani, Takuji ^c   Tsugita, Akira ^b,c   Xu, Bo ^a   Zhang, Ying ^a   Yaoita, Eishin ^a   Osawa, Tetsuo ^d   Yamamoto, Tadashi ^a  

^a NIIGATA UNIVERSITY GRADUATE SCHOOL OF MEDICAL AND DENTAL SCIENCES   (Japan)

^b NEC CORPORATION   (Japan)

^c Tokyo Rikakikai Co   (Japan)

^d NIIGATA CITY GENERAL HOSPITAL   (Japan)

Author keywords

Database; Glomerulus; Human kidney; Mass spectrometry; Two dimensional gel electrophoresis

Indexed keywords

CONFERENCE PAPER; DATA BASE; GLOMERULUS; HUMAN; HUMAN TISSUE; INTERNET; KIDNEY TUMOR; LIQUID CHROMATOGRAPHY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NEPHRECTOMY; NUCLEOTIDE SEQUENCE; PHASE CONTRAST MICROSCOPE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PROCESSING; PROTEOMICS; ROBOTICS; SILVER STAINING; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL ELECTROPHORESIS; UNINDEXED SEQUENCE;

CHROMATOGRAPHY, LIQUID; DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENE EXPRESSION REGULATION; HUMANS; HYDROGEN-ION CONCENTRATION; IMAGE PROCESSING, COMPUTER-ASSISTED; IMMUNOHISTOCHEMISTRY; INTERNET; KIDNEY; KIDNEY GLOMERULUS; KIDNEY NEOPLASMS; MASS SPECTROMETRY; MICROSCOPY, PHASE-CONTRAST; PROTEOME; PROTEOMICS; SILVER STAINING; SOFTWARE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

GLOMERULUS;

EID: 20144386719     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200401075     Document Type: Conference Paper

References (27)

1. Peng, J., Gygi, S. P., J. Mass Spect. 2001, 36, 1083-1091.
2. Speicher, D. W., The Scientist 2002, 16, 12-14.
3. Rout, M. P., Aitchison, J. D., Suprapto, A., Hjertaas, K. et al., J. Cell Biol. 2000, 148, 635-651.
4. Andersen, J. S., Willkinson, C. J., Mayor, T., Mortensen, P. et al., Nature 2003, 426, 570-574.
5. Oda, Y., Nagasu, T., Chait, B. T., Nat. Biotechnol. 2001, 379, 379-382.
6. Ficarro, S. B., McCleland, M. L., Stukenberg, P. T., Burke, D. J. et al., Nat. Biotechnol. 2002, 20, 301-305.
7. Pandey, A., Fernandez, M. M., Steen, H., Blagoev, B. et al., J. Biol. Chem. 2000, 275, 38633-38639.
8. Tsugita, A., Kawasaki, T., Uchida, T., Sakai, T. et al., Electrophoresis 2000, 21, 1853-1871.
9. Ramagli, L. S., Rodriguez, L. Z., Electrophoresis 1985, 6, 559-563.
10. Schevchenko, A., Wilm, M., Vorm, O., Mann, M., Anal. Chem. 1996, 68, 850-858.
11. th Int. CODATA Conf. 2002, p. 50.
12. Magyarlaki, T., Kiss, B., Buzogány, I., Fazekas, A. et al., Nephron 1999, 82, 127-130.
13. Gygi, S. P., Corthals, G. L., Zhang, Y., Rochon, Y. et al., Proc. Natl. Acad. Sci. USA, 2000, 97, 9390-9395.
14. Wilkins, M. R., Gasteiger, E., Sanchez, J. C., Bairoch, A. et al., Electrophoresis 1998, 19, 1501-1505.
15. Pavenstldt, H., Kriz, W., Kretzler, M., Physiol. Rev. 2003, 83, 253-307.
16. Ransom, R. F., Contrib. Nephrol. 2004, 141, 189-211.
17. Drenckhahn, D., Franke, R. P., Lab. Invest., 1988, 59, 673-682.
18. Cortes, P., Mendez, M., Riser, B. L., Guerin, C. J. et al., Kidney Int. 2000, 58, 2452-2461.
19. Kaplan, J. M., Kim, S. H., North, K. N., Rennke, H. et al., Nat. Genet 2000, 24, 251-256.
20. Orlando, R. A., Takeda, T., Zak, B., Schmieder, S. et al., J. Am. Soc. Nephrol. 2001, 12, 1589-1598.
21. Takeda, T., McQuistan, T., Orlando, R. A., Farquhar, M. G., J. Clin. Invest. 2001, 108, 289-301.
22. Welsch, T., Endlich, N., Kriz, W., Endlich, K. Am. J. Physiol. Renal. Physiol. 2001, 281, F769-F777.
23. Togawa, A., Miyoshi, J., Ishizaki, H., Tanaka, M. et al., Oncogene 1999, 18, 5373-5378.
24. Smoyer, W. E., Gupta, A., Mundel, P., Bailew, J. D. et al., J. Clin. Invest. 1996, 97, 2697-2704.
25. Smoyer, W. E., Ransom, R. F., FASEB J. 2002, 16, 315-326.
26. Barison, L., Mundel, P., Am. J. Nephrol. 2003, 23, 353-360.
27. Oh-Ishi, M., Satoh, M., Maeda, T., Electrophoresis 2000, 21, 1653-1669.