Complete coding sequences and haplotypic associations of HLA-B*0707, -B*1524, -B*4405, -B*4802, -DRB1*0409, -DRB1*0411, -DRB1*1115, -DRB1*1305, and the novel allele -DRB1*0709. Group-specific amplification of cDNA from DRB1 alleles associated to DRB3 and DRB4

Tissue Antigens

Volumn 65, Issue 6, 2005, Pages 529-538

  Vilches, Carlos ^a   Sepulveda S ^a   Balas, A ^b   Solis R ^a   Aviles M J ^b   Estefania E ^a   Gomez Lozano N ^a   Vicario, J L ^b   DePablo, R ^a  

^a HOSPITAL UNIVERSITARIO PUERTA DE HIERRO   (Spain)

^b Centro de Transfusión de la Comunidad de Madrid ^*  (Spain)

Author keywords

Alleles; cDNA; Haplotype; HLA B; HLA DRB1; Population genetics; Sequence based typing

Indexed keywords

COMPLEMENTARY DNA; HLA B ANTIGEN; HLA DR ANTIGEN; HLA DRB3 ANTIGEN; HLA DRB4 ANTIGEN; UNCLASSIFIED DRUG;

ALLELE; ALLELISM; ARTICLE; DNA ISOLATION; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC ASSOCIATION; HAPLOTYPE; HLA SYSTEM; HUMAN; HUMAN CELL; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; POPULATION DISTRIBUTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

3' UNTRANSLATED REGIONS; ALLELES; AMINO ACID SEQUENCE; BASE SEQUENCE; DNA PRIMERS; DNA, COMPLEMENTARY; EVOLUTION, MOLECULAR; HAPLOTYPES; HLA-B ANTIGENS; HLA-DR ANTIGENS; HUMANS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 20144375591     PISSN: 00012815     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2005.00407.x     Document Type: Article

References (53)

1. Marsh SG, Albert ED, Bodmer WF et al. Nomenclature for factors of the HLA system, 2002. Tissue Antigens 2002: 60: 407-64.
2. Robinson J, Waller MJ, Parham P et al. IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex. Nucl Acids Res 2003: 31: 311-4.
3. Vilches C. MHC class I peptide binding and tapasin. J Immunol 2003: 171: 3.
4. Magor KE, Taylor EJ, Shen SY et al. Natural inactivation of a common HLA allele (A*2402) has occurred on at least three separate occasions. J Immunol 1997: 158: 5242-50.
5. Balas A, Santos S, Aviles MJ et al. Elongation of the cytoplasmic domain, due to a point deletion at exon 7, results in an HLA-C null allele, Cw*0409N. Tissue Antigens 2002: 59: 95-100.
6. Elsner HA, Blasczyk R. Immunogenetics of HLA null alleles: implications for blood stem cell transplantation. Tissue Antigens 2004: 64: 687-95.
7. Braud V, Jones EY, McMichael A. The human major histocompatibility complex class Ib molecule HLA-E binds signal sequence-derived peptides with primary anchor residues at positions 2 and 9. Eur J Immunol 1997: 27: 1164-9.
8. Llano M, Lee N, Navarro F et al. HLA-E-bound peptides influence recognition by inhibitory and triggering CD94/NKG2 receptors: preferential response to an HLA-G-derived nonamer. Eur J Immunol 1998: 28: 2854-63.
9. Hutchinson SL, Wooldridge L, Tafuro S et al. The CD8 T cell coreceptor exhibits disproportionate biological activity at extremely low binding affinities. J Biol Chem 2003: 278: 24285-93.
10. Martinez-Naves E, Barber LD, Madrigal JA et al. Interactions of HLA-B*4801 with peptide and CD8. Tissue Antigens 1997: 50: 258-64.
11. Vilches C, Sanz L, de Pablo R, Moreno ME, Puente S, Kreisler M. Molecular characterization of the new alleles HLA-B*8101 and B*4407. Tissue Antigens 1996: 47: 139-42.
12. Estefania E, Gomez-Lozano N, De Pablo R, Moreno ME, Vilches C. Complementary DNA sequence of the HLA-B*3924 allele. Eur J Immunogenet 2003: 30: 11-2.
13. Vidal S, Morante MP, Moga E et al. Molecular analysis of HLA-DRB1 polymorphism in north-east Spain. Eur J Immunogenet 2002: 29: 75-7.
14. de Pablo R, Sous R, Balas A, Vilches C. Specific amplification of the HLA-DRB4 gene from c-DNA. Complete coding sequence of the HLA alleles DRB4*0103101 and DRB4*01033. Tissue Antigens 2002: 59: 44-6.
15. Ennis PD, Zemmour J, Salter RD, Parham P. Rapid cloning of HLA-A,B cDNA by using the polymerase chain reaction: frequency and nature of errors produced in amplification. Proc Natl Acad Sci USA 1990: 87: 2833-7.
16. Grundschober C, Rufer N, Adami N et al. Sequence of a new HLA-B7 variant, B*0707, that differs from the common B*0702 allele by one single residue in the peptide binding groove. Tissue Antigens 1997: 49: 508-11.
17. Petersdorf EW, Hansen JA. A comprehensive approach for typing the alleles of the HLA-B locus by automated sequencing. Tissue Antigens 1995: 46: 73-85.
18. Wang J, Fernandez-Vina MA, Lazaro AM, Shumway W, LeFor W, Stastny P. New alleles of the HLA-B15 family. Hum Immunol 1997: 55: 184-9.
19. Schreuder GM, Hurley CK, Marsh SG et al. The HLA Dictionary 2001: a summary of HLA-A, -B, -C, -DRB1/3/4/5, -DQB1 alleles and their association with serologically defined HLA-A, -B, -C, -DR and -DQ antigens. Tissue Antigens 2001: 58: 109-40.
20. Williams F, Meenagh A, Darke C et al. Analysis of the distribution of HLA-B alleles in populations from five continents. Hum Immunol 2001: 62: 645-50.
21. Cao K, Hollenbach J, Shi X, Shi W, Chopek M, Fernández-Viña MA. Analysis of the frequencies of HLA-A, B, and C alleles and haplotypes in the five major ethnic groups of the United States reveals high levels of diversity in these loci and contrasting distribution patterns in these populations. Hum Immunol 2001: 62: 1009-30.
22. Yao Z, Volgger A, Scholz S, Bonisch J, Albert ED. Nucleotide sequence of a novel HLA-B44 subtype B*4405. Immunogenetics 1994: 40: 310.
23. Petersdorf EW, Setoda T, Smith AG, Hansen JA. Analysis of HLA-B*44 alleles encoded on extended HLA haplotypes by direct automated sequencing. Tissue Antigens 1994: 44: 211-6.
24. Macdonald WA, Purcell AW, Mifsud NA et al. A naturally selected dimorphism within the HLA-B44 supertype alters class I structure, peptide repertoire, and T cell recognition. J Exp Med 2003: 198: 679-91.
25. Zernich D, Purcell AW, Macdonald WA et al. Natural HLA class I polymorphism controls the pathway of antigen presentation and susceptibility to viral evasion. J Exp Med 2004: 200: 13-24.
26. Santos S, Vicario JL, Merino JL, Balas A. HLA-B44 subtyping in a Spanish population: further evidence of Caucasian population diversity. Tissue Antigens 1997: 49: 124-8.
27. Vidan-Jeras B, Breur-Vriesendorp B, Bohinjec M, Jeannet M, Roosnek E, Tiercy JM. HLA-B44 allele frequencies and haplotypic associations in three European populations. Eur J Immunogenet 1997: 24: 335-43.
28. Bunce M, Barnardo MC, Procter J, Marsh SG, Vilches C, Welsh KI. High resolution HLA-C typing by PCR-SSP: identification of allelic frequencies and linkage disequilibria in 604 unrelated random UK Caucasoids and a comparison with serology [corrected and republished article originally printed in Tissue Antigens 1996: 48: 680-91]. Tissue Antigens 1997: 50: 100-11.
29. Grundschober C, Rufer N, Sanchez-Mazas A et al. Molecular characterization of HLA-C incompatibilities in HLA-ABDR-matched unrelated bone marrow donor-recipient pairs. Sequence of two new Cw alleles (Cw*02023 and Cw*0707) and recognition by cytotoxic T lymphocytes. Tissue Antigens 1997: 49: 612-23.
30. Prasad VK, Heller G, Kernan NA, O'Reilly RJ, Yang SY. The probability of HLA-C matching between patient and unrelated donor at the molecular level: estimations based on the linkage disequilibrium between DNA typed HLA-B and HLA-C alleles. Transplantation 1999: 68: 1044-50.
31. Bugawan TL, Klitz W, Blair A, Erlich HA. High-resolution HLA class I typing in the CEPH families: analysis of linkage disequilibrium among HLA loci. Tissue Antigens 2000: 56: 392-404.
32. Watkins DI, McAdam SN, Liu X et al. New recombinant HLA-B alleles in a tribe of South American Amerindians indicate rapid evolution of MHC class I loci. Nature 1992: 357: 329-33.
33. de Pablo R, Beraun Y, Nieto A et al. HLA class I and class II allele distribution in the Peruvian population. Tissue Antigens 2000: 56: 507-14.
34. Leffell MS, Fallin MD, Erlich HA et al. HLA antigens, alleles and haplotypes among the Yup'ik Alaska natives: report of the ASHI Minority Workshops, Part II. Hum Immunol 2002: 63: 614-25.
35. Hollenbach JA, Thomson G, Cao K et al. HLA diversity, differentiation, and haplotype evolution in Mesoamerican natives. Hum Immunol 2001: 62: 378-90.
36. Lanchbury JS, Jaeger EE, Welsh KI, Panayi GS. Nucleotide sequence of a novel HLA-DRB4B1 allele, DRB1*0409. Immunogenetics 1991: 33: 210-2.
37. Reed E, Lupu F, McManus P, Seigle R, Suciu-Foca N. Population and family studies of HLA-DR4 by use of oligonucleotide typing. Tissue Antigens 1992: 39: 266-71.
38. Lee TD, Lee A, Lai S, Huang R, Yan L, Lee G. An apparent functional correlation between variations in amino acid residues in HLA-DR4.1 and 4.2 serological subtypes and oligonucleotide characterization. Eur J Immunogenet 1996: 23: 129-40.
39. Arnaiz-Villena A, Vargas-Alarcon G, Granados J et al. HLA genes in Mexican Mazatecans, the peopling of the Americas and the uniqueness of Amerindians. Tissue Antigens 2000: 56: 405-16.
40. Petersdorf EW, Smith AG, Mickelson EM, Martin PJ, Hansen JA. Ten HLA-DR4 alleles defined by sequence polymorphisms within the DRB1 first domain. Immunogenetics 1991: 33: 267-75.
41. Vullo CM, Delfino L, Angelini G, Ferrara GB. HLA polymorphism in a Mataco South American Indian tribe: serology of class I and II antigens. Molecular analysis of class II polymorphic variants. Hum Immunol 1992: 35: 209-14.
42. Williams RC, Troup GM, Nelson JL et al. Report of the North American Indian anthropology section. In: Tsuji K, Aizawa M, Sasazuki T, eds. HLA 1991, Vol. I. Oxford: Oxford University Press, 1992: 683-5.
43. Imanishi T, Akaza T, Kimura A, et al. Allele and haplotype frequencies for HLA and complement loci in various ethnic groups. In: Tsuji K, Aizawa M, Sasazuki T, eds. HLA 1991, Vol. I. Oxford: Oxford University Press, 1992: 1065-220.
44. Cerna M, Falco M, Friedman H et al. Differences in HLA class II alleles of isolated South American Indian populations from Brazil and Argentina. Hum Immunol 1993: 37: 213-20.
45. Vargas-Alarcon G, Gamboa R, Zuniga J et al. HLA-DR4 allele frequencies on Indian and Mestizo population from Mexico. Hum Immunol 2000: 61: 341-4.
46. Gao X, Veale A, Serjeantson SW. HLA class II diversity in Australian aborigines: unusual HLA-DRB1 alleles. Immunogenetics 1992: 36: 333-7.
47. Fischer GF, Fae I, Petrasek M, Haas H, Mayr WR. An HLA-DR11 variant (HLA-DRB1*1115) segregating in a family of Turkish origin. Tissue Antigens 1995: 45: 143-4.
48. Robbins F, Tang T, Yao H, Ng J, Hartzman RJ, Hurley CK. Direct sequencing of SSP-PCR-amplified cDNA to identify new alleles in the DR52-associated DRB1 group: identification of DRB1*1115, DRB1*1117 and DRB1*1319. Tissue Antigens 1995: 45: 302-8.
49. Petersdorf EW, Griffith RL, Erlich HA et al. Unique sequences for two HLA-DRB1 genes expressed on distinct DRw6 haplotypes. Immunogenetics 1990: 32: 96-103.
50. Tiercy JM, Gebuhrer L, Freidel C, Betuel H, Mach B, Jeannet M. Additional complexity within the HLA-D region: sequence analysis of two new DRw13-DQw7 haplotypes. Hum Immunol 1991: 32: 95-101.
51. Grubic Z, Zunec R, Cecuk-Jelicic E, Kastelan D, Kerhin-Brkljacic V, Kastelan A. High resolution molecular typing of HLA class II region in the population of the island of Krk, Croatia. Coll Antropol 1999: 23: 577-88.
52. Roitberg-Tambur A, Friedmann A, Witt CS et al. HLA polymorphism in Moroccan Jewry. Hum Immunol 1994: 40: 61-7.
53. Sintasath DM, Tang T, Slack R et al. Relative HLA-DRB1*13 allele frequencies and DRB3 associations of unrelated individuals from five US populations. Hum Immunol 1999: 60: 1001-10.