HLA diversity, differentiation, and haplotype evolution in mesoamerican natives

Human Immunology

Volumn 62, Issue 4, 2001, Pages 378-390

  Hollenbach, J A ^a,g   Thomson, G ^a   Cao, K ^b   Fernandez Vina, M ^b   Erlich, H A ^c   Bugawan, T L ^c   Winkler, C ^d   Winter, M ^e   Klitz, W ^f  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b AMERICAN RED CROSS   (United States)

^c ROCHE MOLECULAR SYSTEMS   (United States)

^d NATIONAL CANCER INSTITUTE   (United States)

^e INSTITUTO NACIONAL DE ANTROPOLOGÍA E HISTORIA   (Mexico)

^f CHILDREN S HOSPITAL OAKLAND RESEARCH INSTITUTE   (United States)

^g NONE   (United States)

Author keywords

Amerindian; Haplotype; HLA; Linkage disequilibrium

Indexed keywords

DNA; HLA A ANTIGEN; HLA ANTIGEN CLASS 1; HLA ANTIGEN CLASS 2; HLA B ANTIGEN; HLA C ANTIGEN; HLA DQ ANTIGEN; HLA DR ANTIGEN;

AMERICAN INDIAN; ARTICLE; CONTROLLED STUDY; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC VARIABILITY; HAPLOTYPE; HLA TYPING; HOMOZYGOSITY; HUMAN; HUMAN CELL; MEXICO; NATURAL SELECTION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 0035049922     PISSN: 01988859     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0198-8859(01)00212-9     Document Type: Article

References (41)

1. Linguistic origins of Native Americans
2. The initial domestication of Cucubita pepo in the Americas 10,000 years ago
3. A scan for linkage disequilibrium across the human genome
4. Evolutionary and population perspectives of the human HLA complex
5. HLA-DR, DQ and DP typing using PCR amplification and immobilized probes
6. Analysis of HLA class II polymorphism using polymerase chain reaction
7. Rapid typing of HLA-DQB1 DNA polymorphism using nonradioactive oligonucleotide probes and amplified DNA
8. Seven new DPB1 alleles and their population distribution
9. Discrimination of human HLA-DRB1 alleles by PCR-SSCP (single-strand conformation polymorphism) method
10. HLA-DQB1 and -DQA1 typing by PCR amplification with sequence-specific primers (PCR-SSP) in 2 hours
11. A method for typing the polymorphism at the HLA-A locus using PCR amplification and immobilized oligonucleotide probes
12. DNA typing system of HLA class I genes using PCR and sequences-specific oligonucleotide probes (PCR-SSOP)
13. Performing the exact test of Hardy-Weinberg proportion for multiple alleles
14. The homozygosity test of neutrality
15. The sampling theory of selectively neutral alleles
16. An exact test for neutrality based on the Ewens sampling distribution
17. Population genetic analysis of HLA-A, -B, -C, -DR, and other genetics markers
18. Discordant patterns of disequilibrium of the peptide transporter loci within the HLA class II region
19. Anthropology component report for region Latin America: Amerindian and admixed populations
20. HLA class II linkage disequilibrium and haplotype evolution in the Cayapa Indians of Ecuador
21. Results of expedicion humana. I. Analysis of HLA class II (DRB1-DQA1-DPB1) alleles and DR-DQ haplotypes in nine Amerindian populations from Colombia
22. HLA class II polymorphism in the Ticuna of Brazil: Evolutionary implications of the DRBi*0807 allele
23. The contribution of the HLA-A, -B, -C and -DR, -DQ DNA typing to the study of the origins of Spaniards and Basques
24. Dissimilar evolution of B-locus versus A-locus and class II loci of the HLA region in South American Indian tribes
25. Evolution of HLA-class I compared to HLA-class II polymorphism in Terena, a South-American Indian tribe
26. The HLA polymorphism of two distinctive South-American Indian tribes: The Kaingang and the Guarani
27. HLA antigens in five Amerindian groups (Yuko, Bari, Tunebo, Guane and Paez) of Columbia: Results of "Expedicion Humana"
28. HLA antigens in Amerindian groups of two different linguistic families from Columbia
29. Episodic evolution and turnover of HLA in the indigenous human populations of the Americas
30. HLA-B alleles of the Cayapa of Ecuador: New B39 and B15 alleles
31. Further diversification of the HLA-B locus in Central American Amerindians: New B*39 and B*51 alleles in the Kuna of Panama
32. New recombinant HLA-B alleles in a tribe of South American Amerindians indicate rapid evolution of MHC class I loci
33. Evidence for balancing selection at HLA
34. Evolution of HLA class II molecules: Allelic and amino acid site variability across populations
35. Contrasting evolutionary histories among HLA region loci
36. Recombination rates across the HLA complex: Use of microsatellites as a rapid screen for recombinant chromosomes