Relative HLA-DRB1*13 allele frequencies and DRB3 associations of unrelated individuals from five US populations

Human Immunology

Volumn 60, Issue 10, 1999, Pages 1001-1010

  Sintasath, David M ^a   Tang, Ting ^a   Slack, Rebecca ^b   Tilley, Eurona E ^a   Ng, Jennifer ^a,c   Hartzman, Robert J ^c   Hurley, Carolyn Katovich ^a  

^a GEORGETOWN UNIVERSITY MEDICAL CENTER   (United States)

^b GEORGETOWN UNIVERSITY   (United States)

^c NAVAL MEDICAL RESEARCH CENTER   (United States)

Author keywords

Allele frequency; DRB3; HLA DRB1*13; PCR SSOP

Indexed keywords

DNA; HLA DR ANTIGEN;

ARTICLE; ASIAN AMERICAN; CAUCASIAN; CONTROLLED STUDY; DNA SEQUENCE; ETHNIC GROUP; GENE FREQUENCY; HAPLOTYPE; HLA TYPING; HUMAN; HUMAN CELL; MAJOR CLINICAL STUDY; NEGRO; OLIGONUCLEOTIDE PROBE; POLYMERASE CHAIN REACTION; POPULATION GENETICS; PRIORITY JOURNAL; UNITED STATES;

ALLELES; CONTINENTAL POPULATION GROUPS; DATABASES, FACTUAL; GENE FREQUENCY; HLA-DR ANTIGENS; HUMANS; OLIGONUCLEOTIDE PROBES; PHENOTYPE; SENSITIVITY AND SPECIFICITY; UNITED STATES;

EID: 0032704663     PISSN: 01988859     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0198-8859(99)00085-3     Document Type: Article

References (40)

1. Satta Y., Mayer W.E., Klein J. HLA-DRB intron 1 sequences implications for the evolution of HLA-DRB genes and haplotypes . Hum Immunol. 51:1996;1.
2. Svensson A., Setterbald N., Sigurdardottir S., Rask L., Andersson G. Primate DRB genes from the DR3 and DR8 haplotypes contain ERV9LTR elements at identical positions. Immunogenetics. 41:1995;74.
3. Lee K.W., Hurley C.K., Hartzman R., Johnson A.H. The complexity of DRw6 and DR5 haplotypes in American blacks demonstrated by serology, cellular typing and RFLP analysis. Hum Immunol. 29:1990;202.
4. Marsh S.G.E. HLA class II region sequences, 1998. Tissue Antigens. 51:1998;467.
5. Beatty P.G., Mori M., Milford E. Impact of racial genetic polymorphism on the probability of finding an HLA-matched donor. Transplantation. 60:1995;778.
6. Shaffer A.L., Falk-Wade J.A., Tortorelli V., Cigan A., Carter C., Hassan K., Hurley C.K. HLA-DRw52-associated DRB1 alleles identification using polymerase chain reaction-amplified DNA, sequence-specific oligonucleotide probes, and a chemiluminescent detection system . Tissue Antigens. 39:1992;84.
7. Yang S.Y., Milford E., Hammerling U., Dupont B. Description of the reference panel of B-lymphoblastoid cell lines for factors of the HLA system the B-cell line panel designed for the Tenth International Histocompatibility Workshop . Dupont B. Immunobiology of HLA. Vol I:1989;Springer-Verlag, New York.
8. Kimura A., Dong R.P., Harada H., Sasazuki T. DNA typing of HLA class II genes in B-lymphoblastoid cell lines homozygous for HLA. Tsuji K., Aizawa M., Sasazuki T. HLA 1991. 1992;Oxford University Press, Oxford.
9. Lee K.W., Johnson A.H., Hurley C.K. Two divergent routes of evolution gave rise to the DRw13 haplotypes. J Immunol. 145:1990;3119.
10. Snedecor G., Cochran W. Statistical Methods. 1989;Iowa State University Press, Ames.
11. Hsu E., Bei M., Slack R., Hartzman R.J., Ng J., Hurley C.K. HLA-A*28 allele frequencies in the five major U.S. ethnic groups. Hum Immunol. 60:1999;159.
12. Gorski J., Mach B. Polymorphism of human Ia antigens gene conversion between two DR beta loci results in a new HLA-D/DR specificity . Nature. 322:1986;67.
13. Tiercy J.M., Gorski J., Betuel H., Freidel A.C., Gebuhrer L., Jeannet M., Mach B. DNA typing of DRw6 subtypes correlation with DRB1 and DRB3 allelic sequences by hybridization with oligonucleotide probes . Hum Immunol. 24:1989;1.
14. Tiercy J.-M., Jeannet M., Mach B. A new HLA-DRB1 allele within the DRw52 supertypic specificity (DRw13-DwHAG) sequencing and direct identification by oligonucleotide typing . Eur J Immunol. 20:1990;237.
15. Tiercy J., Gebuhrer L., Freidel C., Betuel H., Mach B., Jeannet M. Additional complexity within the HLA-D region sequence analysis of two new DRw13-DQw7 haplotypes . Hum Immunol. 32:1991;95.
16. Petersdorf E., Smith A.G., Haase A.M., Martin P.J., Hansen J.A. Polymorphism of HLA-DRw52-associated DRB1 genes as defined by sequence-specific oligonucleotide probe hybridization and sequencing. Tissue Antigens. 38:1991;169.
17. Lee K.W. DR6 in Koreans. Hum Immunol. 37:1993;229.
18. Horne C., Goodfellow P.J., McDonald H.L., Junker A.K., Keown P.A., Hoar D.I. A new HLA-DRB1 allele formed by an intra-exonic interallelic crossover. Tissue Antigens. 42:1993;141.
19. Yunis J., Kineke E., Yunis E.J. Characterization of a new DRB1 allele, DRB1*1309, by PCR-SSOP and sequencing. Tissue Antigens. 43:1994;54.
20. Anholts J.D.H., Verduyn W., Parlevliet A., Doxiadis I.I.N., D'Amaro J., Giphart M.J., Persijn G.G., Schreuder G.M.T. Irregular polymerase chain reaction-sequence-specific oligonucleotide hybridization patterns reveal seven new HLA-DRB1 alleles related to DR2, DR3, DR6, DR8, and DR11 implications for sequence-specific priming . Hum Immunol. 42:1995;15.
21. Duffose F., Cracco P., Becuwe D., Lemaitre V., Huart J. A novel HLA DR52-associated DRB1 allele (DRB1*1311). Tissue Antigens. 43:1994;271.
22. Smith A.G., Safirman C., Kelso C., Amar A., Hansen J.A., Brautbar C. Two new DR52-associated DRB1 alleles, DRB1*1111 and *1312, identified by PCR/SSOP and confirmed by DNA sequencing. Tissue Antigens. 44:1994;52.
23. Noreen H., Lin Y., Davidson M., Johnson S., Segall M. identification of the DRB1*1313 allele in a sibling pair. Tissue Antigens. 50:1997;675.
24. Blasczyk R., Van Lessen A., Schwell N., Huhn D., Salama A. A novel HLA-DR13 allele (DRB1*1314) identified by single-strand conformation polymorphism analysis and confirmed by direct sequencing. Hum Immunol. 43:1995;309.
25. Zetterquist H., Olerup O. A novel DRB1 allele (DRB1*1318) featuring a DR8-associated sequence motif on a DR52 haplotype. Tissue Antigens. 46:1995;337.
26. Robbins F.M., Tang T., Yao H.L., Ng J., Hartzman R.J., Hurley C.K. Direct sequencing of SSP-PCR amplified DNA to identify new alleles in the DR52-associated DRB1 group Identification of DRB1*1115, DRB1*1117, and DRB1*1319 . Tissue Antigens. 45:1995;302.
27. Hashemi S., Couture C., Buyse I., Cole R., Aye M. Identification of a new DRB1*13 (DRB1*1320) and a novel DRB1*15 allele (DRB1*15012) with a silent mutation affecting oligotyping. Tissue Antigens. 47:1996;147.
28. Duran K.J., Maeda H., Otten H.G., De Vries R., Schreuder G.M.T., Tilanus M.G.J. Two newly identified HLA-DRB1 alleles DRB1*1322 and DRB1*1327 . Immunogenetics. 46:1997;442.
29. Ellis J.M., Robbins F.M., Wang J., Tang T., Heine U., Mason J., Sese D., Milford E., Hurley C.K. Identification of four new DR52-associated DRB1 alleles DRB1*1424, *1425, *1323, and *1324 . Tissue Antigens. 50:1997;42.
30. Poli F., Bianchi P., Crespiatico L., Sirchia G. Identification of a new DRB1 allele (DRB1*1325) by PCR-SSP and DNA sequencing. Tissue Antigens. 48:1996;714.
31. Voorter C., de Bruyn-Geraets D., Verduyn W., Schreuder G., van den Berg-Loonen E. Identification of a new HLA-DRB1*13 allele (DRB1*1326) with a short DRB1*16 sequence. Tissue Antigens. 49:1997;88.
32. Schaffer M., Olerup O. A novel DRB1*13 allele (DRB1*1327) on a DR17, DQ2 haplotype with a DRB1*0301 sequence motif in the second hyperpolymorphic region. Tissue Antigens. 49:1997;186.
33. Bergstrom T.F., Josefsson A., Erlich H.A., Gyllensten U. Recent origin of HLA-DRB1 alleles and implications for human evolution. Nature Genet. 18:1998;237.
34. Imanishi T., Akaza T., Kimura A., Tokunaga K., Gojobori T. Allele and haplotype frequencies for HLA and complement loci in various ethnic groups. Tsuji K., Aizawa M., Sasazuki T. HLA 1991. Volume 1:1992;Oxford University Press, New York.
35. Dard P., Sanchez-Mazas A., Tiercy J. HLA-A, -B, and -DR differentiation among North and West African populations. Tsuji K., Aizana M., Sasazuki T. HLA 1991. 1992;Oxford Science Publications, Oxford.
36. Dunand V.A., Ng C., Wade J.A., Bwayo J., Plummer F.A., MacDonald K.S. HLA-DR 52- and 51-associated DRB1 alleles in Kenya, East Africa. Tissue Antigens. 49:1997;397.
37. Just J.J., King M.C., Thomson G., Klitz W. African-American HLA class II allele and haplotype diversity. Tissue Antigens. 48:1996;636.
38. Gorski J., Tilanus M., Giphart M., Mach B. Oligonucleotide genotyping shows that alleles at the HLA-DRB3 locus of the DRw52 supertypic group segregate independently of known DR or Dw specificities. Immunogenetics. 25:1987;79.
39. Blank M., Blank A., King S., Yashiki S., Kywayama M., Fujiyama C., Gongora D., Zaninovic V., Cranston B., Hanchard B., Imanishi T., Manns A., Blattner W., Tajima K., Hayami M., Fujiyoshi T., Sonoda S. Distribution of HLA and haplotypes of Colombian and Jamaican black populations. Tissue Antigens. 45:1995;111.
40. Marshall E. DNA studies challenge the meaning of race. Science. 282:1998;654.